Wall clock time and date at job start Tue Mar 31 2020 00:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46883 * 2 1 4 4 C 1.50692 * 109.47658 * 239.99955 * 2 1 3 5 5 N 1.30326 * 126.16140 * 284.69236 * 4 2 1 6 6 N 1.28654 * 109.58903 * 179.85916 * 5 4 2 7 7 C 1.31527 * 109.23078 * 0.40379 * 6 5 4 8 8 C 1.47047 * 126.41926 * 179.71863 * 7 6 5 9 9 C 1.36152 * 125.33374 * 0.04145 * 8 7 6 10 10 C 1.37746 * 114.44911 * 179.97438 * 9 8 7 11 11 C 1.33699 * 115.18985 * 0.02562 * 10 9 8 12 12 S 1.75829 * 109.95852 * 359.77030 * 11 10 9 13 13 O 1.34550 * 126.16513 * 104.99338 * 4 2 1 14 14 N 1.46503 * 109.46995 * 119.99789 * 2 1 3 15 15 C 1.46494 * 119.99989 * 60.00296 * 14 2 1 16 16 C 1.36938 * 119.99971 * 240.00532 * 14 2 1 17 17 H 1.07997 * 120.00348 * 23.18970 * 16 14 2 18 18 C 1.38813 * 120.00181 * 203.19314 * 16 14 2 19 19 N 1.31629 * 119.99794 * 13.52868 * 18 16 14 20 20 Si 1.86797 * 120.00244 * 193.52828 * 18 16 14 21 21 H 1.48500 * 109.46962 * 59.99852 * 20 18 16 22 22 H 1.48506 * 109.47062 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47144 * 299.99673 * 20 18 16 24 24 H 1.09004 * 109.46883 * 180.02562 * 1 2 3 25 25 H 1.08990 * 109.47598 * 299.99917 * 1 2 3 26 26 H 1.08999 * 109.46962 * 60.00252 * 1 2 3 27 27 H 1.07999 * 122.77364 * 359.97438 * 9 8 7 28 28 H 1.08001 * 122.40749 * 179.97438 * 10 9 8 29 29 H 1.07999 * 125.02471 * 180.02562 * 11 10 9 30 30 H 1.09001 * 109.47054 * 95.15817 * 15 14 2 31 31 H 1.09005 * 109.47186 * 215.15508 * 15 14 2 32 32 H 1.08997 * 109.47309 * 335.15754 * 15 14 2 33 33 H 0.96995 * 119.99676 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 7 2.0372 -1.9988 -1.4264 6 7 2.5334 -2.2570 -2.5850 7 6 2.8741 -1.1300 -3.1713 8 6 3.4819 -0.9875 -4.5027 9 6 3.7878 -2.0145 -5.3426 10 6 4.3510 -1.6250 -6.5378 11 6 4.5104 -0.3061 -6.6888 12 16 3.9218 0.5367 -5.2623 13 8 2.5621 -0.1291 -2.3221 14 7 2.0183 -0.6906 1.1962 15 6 1.6644 -2.0931 1.4281 16 6 2.8055 -0.0250 2.0977 17 1 2.7697 1.0529 2.1535 18 6 3.6496 -0.7358 2.9397 19 7 3.8979 -2.0066 2.7030 20 14 4.4333 0.1111 4.4088 21 1 3.3700 0.6194 5.3123 22 1 5.2845 -0.8591 5.1434 23 1 5.2678 1.2458 3.9388 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 3.6042 -3.0489 -5.0924 28 1 4.6436 -2.3341 -7.2980 29 1 4.9339 0.1713 -7.5600 30 1 2.4609 -2.7356 1.0525 31 1 1.5341 -2.2631 2.4969 32 1 0.7352 -2.3242 0.9074 33 1 4.4874 -2.5034 3.2917 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972773.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:40 Heat of formation + Delta-G solvation = 102.081469 kcal Electronic energy + Delta-G solvation = -19068.586380 eV Core-core repulsion = 16031.462577 eV Total energy + Delta-G solvation = -3037.123802 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.40556 -37.84808 -36.50802 -35.46645 -32.82057 -31.44254 -29.44324 -28.07881 -26.12940 -24.98755 -24.23718 -22.70939 -22.39089 -20.09761 -19.12560 -18.22791 -16.97050 -16.71008 -16.02133 -15.73012 -15.28017 -14.29139 -14.06312 -13.75980 -13.35481 -13.04124 -12.87195 -12.52827 -12.44796 -11.86563 -11.74741 -11.63862 -11.31980 -11.07082 -10.91965 -10.91199 -10.78115 -10.50361 -10.19605 -10.11737 -9.99396 -9.82288 -8.71787 -8.69409 -8.20293 -7.04463 -5.90550 -3.40466 0.35108 1.28794 1.75065 1.89422 2.59591 2.68295 3.17487 3.31002 3.35943 3.37043 4.29351 4.34841 4.84380 5.03098 5.07769 5.27288 5.37653 5.41868 5.57501 5.79141 5.82421 5.88588 5.96998 6.09269 6.13707 6.23591 6.33463 6.44624 6.69511 6.92010 7.34524 7.64610 7.85899 8.18495 8.93340 9.01125 9.60134 10.09214 11.10263 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.024939 B = 0.004408 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.478565 B = 6350.586063 C = 6624.116378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.249 3.751 3 H 0.093 0.907 4 C 0.182 3.818 5 N -0.283 5.283 6 N -0.262 5.262 7 C 0.185 3.815 8 C -0.114 4.114 9 C -0.087 4.087 10 C -0.134 4.134 11 C -0.212 4.212 12 S 0.160 5.840 13 O -0.233 6.233 14 N -0.560 5.560 15 C 0.159 3.841 16 C -0.277 4.277 17 H 0.077 0.923 18 C 0.013 3.987 19 N -0.887 5.887 20 Si 0.913 3.087 21 H -0.279 1.279 22 H -0.288 1.288 23 H -0.280 1.280 24 H 0.062 0.938 25 H 0.074 0.926 26 H 0.050 0.950 27 H 0.154 0.846 28 H 0.148 0.852 29 H 0.170 0.830 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.013 0.987 33 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.710 4.403 -15.958 16.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.135 3.865 3 H 0.111 0.889 4 C -0.031 4.031 5 N -0.130 5.130 6 N -0.112 5.112 7 C -0.024 4.024 8 C -0.233 4.233 9 C -0.121 4.121 10 C -0.164 4.164 11 C -0.349 4.349 12 S 0.425 5.575 13 O -0.112 6.112 14 N -0.279 5.279 15 C 0.015 3.985 16 C -0.406 4.406 17 H 0.094 0.906 18 C -0.189 4.189 19 N -0.528 5.528 20 Si 0.742 3.258 21 H -0.205 1.205 22 H -0.214 1.214 23 H -0.206 1.206 24 H 0.081 0.919 25 H 0.093 0.907 26 H 0.069 0.931 27 H 0.172 0.828 28 H 0.166 0.834 29 H 0.188 0.812 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.031 0.969 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.867 4.519 -15.128 15.898 hybrid contribution 1.120 -0.016 0.057 1.121 sum -0.747 4.502 -15.071 15.747 Atomic orbital electron populations 1.22187 0.94612 1.02733 1.01564 1.19582 0.93611 0.95455 0.77858 0.88861 1.31390 0.93337 0.90597 0.87793 1.74379 1.17784 1.12989 1.07816 1.74775 1.12174 1.22486 1.01769 1.23897 1.03014 0.83057 0.92467 1.21313 1.10371 0.98252 0.93327 1.20628 0.98869 1.00183 0.92426 1.20018 1.02557 0.95570 0.98264 1.25919 1.08440 0.97827 1.02762 1.84413 1.57790 1.06447 1.08890 1.84997 1.61820 1.39114 1.25271 1.44431 1.56809 1.11237 1.15467 1.20929 0.95830 0.83195 0.98523 1.19320 1.18325 0.91740 1.11238 0.90574 1.25246 0.96803 0.96314 1.00493 1.70120 1.36938 1.08237 1.37511 0.86217 0.78983 0.78543 0.82088 1.20507 1.21369 1.20623 0.91880 0.90706 0.93124 0.82795 0.83400 0.81241 0.93830 0.93808 0.96853 0.93096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.16 37.16 0.34 -2.23 16 2 C 0.25 5.19 3.26 -69.08 -0.22 4.97 16 3 H 0.09 1.84 7.87 -51.93 -0.41 1.43 16 4 C 0.18 3.99 7.25 -12.92 -0.09 3.90 16 5 N -0.28 -6.63 10.63 32.59 0.35 -6.29 16 6 N -0.26 -5.73 12.23 31.95 0.39 -5.34 16 7 C 0.18 3.62 8.24 -14.11 -0.12 3.51 16 8 C -0.11 -1.76 6.46 -36.76 -0.24 -1.99 16 9 C -0.09 -1.12 10.12 -40.51 -0.41 -1.53 16 10 C -0.13 -1.31 10.15 -41.35 -0.42 -1.73 16 11 C -0.21 -1.96 11.21 29.14 0.33 -1.63 16 12 S 0.16 1.93 23.31 -107.50 -2.51 -0.58 16 13 O -0.23 -4.79 10.90 3.34 0.04 -4.75 16 14 N -0.56 -13.96 2.80 -174.82 -0.49 -14.45 16 15 C 0.16 4.02 7.38 59.84 0.44 4.46 16 16 C -0.28 -7.38 9.58 -15.06 -0.14 -7.52 16 17 H 0.08 1.92 7.83 -52.49 -0.41 1.51 16 18 C 0.01 0.36 5.09 -17.43 -0.09 0.27 16 19 N -0.89 -25.71 10.75 55.49 0.60 -25.12 16 20 Si 0.91 21.17 29.57 -169.99 -5.03 16.14 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H 0.06 1.11 6.66 -51.93 -0.35 0.77 16 25 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.15 1.92 8.06 -52.49 -0.42 1.50 16 28 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 29 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 30 H 0.04 1.24 7.11 -51.93 -0.37 0.87 16 31 H 0.04 1.15 7.37 -51.93 -0.38 0.77 16 32 H 0.01 0.30 6.39 -51.93 -0.33 -0.03 16 33 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 301.42 15.07 4.54 4.54 Total: -1.00 -31.45 301.42 -6.23 -37.68 By element: Atomic # 1 Polarization: 1.20 SS G_CDS: -3.50 Total: -2.30 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -0.63 Total: 0.46 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: 0.84 Total: -51.20 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: 0.04 Total: -4.75 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -2.51 Total: -0.58 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.45 -6.23 -37.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972773.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.765 kcal (2) G-P(sol) polarization free energy of solvation -31.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds