Wall clock time and date at job start Tue Mar 31 2020 00:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46883 * 2 1 4 4 C 1.50692 * 109.47658 * 239.99955 * 2 1 3 5 5 N 1.30326 * 126.16140 * 284.69236 * 4 2 1 6 6 N 1.28654 * 109.58903 * 179.85916 * 5 4 2 7 7 C 1.31527 * 109.23078 * 0.40379 * 6 5 4 8 8 C 1.47047 * 126.41926 * 179.71863 * 7 6 5 9 9 C 1.36152 * 125.33374 * 0.04145 * 8 7 6 10 10 C 1.37746 * 114.44911 * 179.97438 * 9 8 7 11 11 C 1.33699 * 115.18985 * 0.02562 * 10 9 8 12 12 S 1.75829 * 109.95852 * 359.77030 * 11 10 9 13 13 O 1.34550 * 126.16513 * 104.99338 * 4 2 1 14 14 N 1.46503 * 109.46995 * 119.99789 * 2 1 3 15 15 C 1.46494 * 119.99989 * 60.00296 * 14 2 1 16 16 C 1.36938 * 119.99971 * 240.00532 * 14 2 1 17 17 H 1.07997 * 120.00348 * 23.18970 * 16 14 2 18 18 C 1.38813 * 120.00181 * 203.19314 * 16 14 2 19 19 N 1.31629 * 119.99794 * 13.52868 * 18 16 14 20 20 Si 1.86797 * 120.00244 * 193.52828 * 18 16 14 21 21 H 1.48500 * 109.46962 * 59.99852 * 20 18 16 22 22 H 1.48506 * 109.47062 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47144 * 299.99673 * 20 18 16 24 24 H 1.09004 * 109.46883 * 180.02562 * 1 2 3 25 25 H 1.08990 * 109.47598 * 299.99917 * 1 2 3 26 26 H 1.08999 * 109.46962 * 60.00252 * 1 2 3 27 27 H 1.07999 * 122.77364 * 359.97438 * 9 8 7 28 28 H 1.08001 * 122.40749 * 179.97438 * 10 9 8 29 29 H 1.07999 * 125.02471 * 180.02562 * 11 10 9 30 30 H 1.09001 * 109.47054 * 95.15817 * 15 14 2 31 31 H 1.09005 * 109.47186 * 215.15508 * 15 14 2 32 32 H 1.08997 * 109.47309 * 335.15754 * 15 14 2 33 33 H 0.96995 * 119.99676 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 7 2.0372 -1.9988 -1.4264 6 7 2.5334 -2.2570 -2.5850 7 6 2.8741 -1.1300 -3.1713 8 6 3.4819 -0.9875 -4.5027 9 6 3.7878 -2.0145 -5.3426 10 6 4.3510 -1.6250 -6.5378 11 6 4.5104 -0.3061 -6.6888 12 16 3.9218 0.5367 -5.2623 13 8 2.5621 -0.1291 -2.3221 14 7 2.0183 -0.6906 1.1962 15 6 1.6644 -2.0931 1.4281 16 6 2.8055 -0.0250 2.0977 17 1 2.7697 1.0529 2.1535 18 6 3.6496 -0.7358 2.9397 19 7 3.8979 -2.0066 2.7030 20 14 4.4333 0.1111 4.4088 21 1 3.3700 0.6194 5.3123 22 1 5.2845 -0.8591 5.1434 23 1 5.2678 1.2458 3.9388 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 3.6042 -3.0489 -5.0924 28 1 4.6436 -2.3341 -7.2980 29 1 4.9339 0.1713 -7.5600 30 1 2.4609 -2.7356 1.0525 31 1 1.5341 -2.2631 2.4969 32 1 0.7352 -2.3242 0.9074 33 1 4.4874 -2.5034 3.2917 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068972773.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:39 Heat of formation + Delta-G solvation = 78.741226 kcal Electronic energy + Delta-G solvation = -19069.598489 eV Core-core repulsion = 16031.462577 eV Total energy + Delta-G solvation = -3038.135911 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.078 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.04036 -38.82058 -38.28838 -37.11689 -34.63104 -32.87651 -31.16532 -29.40388 -28.13221 -26.18989 -25.86026 -24.51152 -23.71153 -21.76057 -20.22974 -19.36941 -18.91521 -18.35315 -17.53398 -17.21288 -16.70611 -15.96442 -15.70534 -14.99309 -14.97465 -14.35550 -14.16530 -13.74089 -13.62408 -13.44363 -13.40553 -13.14297 -12.97950 -12.76791 -12.65969 -12.56199 -12.37783 -12.01604 -11.95541 -11.89326 -11.74878 -11.19172 -10.72722 -9.61660 -9.47517 -9.05362 -7.92935 -5.48365 -0.76883 0.30036 0.53168 0.85804 1.14914 1.37529 1.46309 1.50732 1.56627 1.81500 2.43876 2.84713 3.26128 3.35304 3.68617 3.89420 4.10537 4.20878 4.28381 4.35790 4.48297 4.58500 4.60373 4.77512 4.96119 5.00078 5.01790 5.18325 5.20943 5.35438 5.37229 5.58556 5.74666 6.17820 6.98373 7.29665 7.64930 8.11115 9.07871 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.024939 B = 0.004408 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.478565 B = 6350.586063 C = 6624.116378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.247 3.753 3 H 0.105 0.895 4 C 0.169 3.831 5 N -0.310 5.310 6 N -0.304 5.304 7 C 0.211 3.789 8 C -0.181 4.181 9 C -0.064 4.064 10 C -0.144 4.144 11 C -0.170 4.170 12 S 0.160 5.840 13 O -0.235 6.235 14 N -0.580 5.580 15 C 0.185 3.815 16 C -0.285 4.285 17 H 0.089 0.911 18 C -0.045 4.045 19 N -0.931 5.931 20 Si 0.981 3.019 21 H -0.268 1.268 22 H -0.297 1.297 23 H -0.272 1.272 24 H 0.052 0.948 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.151 0.849 28 H 0.186 0.814 29 H 0.214 0.786 30 H 0.003 0.997 31 H 0.022 0.978 32 H 0.032 0.968 33 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.287 6.287 -18.782 19.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.135 3.865 3 H 0.123 0.877 4 C -0.045 4.045 5 N -0.155 5.155 6 N -0.152 5.152 7 C 0.001 3.999 8 C -0.299 4.299 9 C -0.099 4.099 10 C -0.173 4.173 11 C -0.307 4.307 12 S 0.425 5.575 13 O -0.115 6.115 14 N -0.300 5.300 15 C 0.040 3.960 16 C -0.415 4.415 17 H 0.107 0.893 18 C -0.242 4.242 19 N -0.574 5.574 20 Si 0.807 3.193 21 H -0.194 1.194 22 H -0.223 1.223 23 H -0.198 1.198 24 H 0.071 0.929 25 H 0.106 0.894 26 H 0.097 0.903 27 H 0.169 0.831 28 H 0.204 0.796 29 H 0.231 0.769 30 H 0.022 0.978 31 H 0.041 0.959 32 H 0.050 0.950 33 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.472 6.420 -17.981 19.149 hybrid contribution 1.029 -0.550 0.503 1.270 sum -0.443 5.870 -17.478 18.443 Atomic orbital electron populations 1.22086 0.91372 1.02693 1.03616 1.19809 0.95555 0.95009 0.76172 0.87719 1.31123 0.94202 0.90295 0.88894 1.74283 1.18569 1.13890 1.08795 1.74694 1.14931 1.23629 1.01942 1.24664 1.00028 0.81991 0.93172 1.21503 1.14731 1.01043 0.92660 1.20980 0.96398 0.99702 0.92841 1.20328 1.02511 0.96675 0.97743 1.26527 1.04816 0.97313 1.02055 1.84419 1.57798 1.05218 1.10078 1.84953 1.61924 1.39284 1.25347 1.44463 1.57171 1.10821 1.17543 1.20494 0.95090 0.83462 0.96937 1.19759 1.17536 0.92442 1.11734 0.89286 1.26082 0.97833 0.96888 1.03359 1.70320 1.38495 1.09943 1.38689 0.85158 0.78084 0.77284 0.78783 1.19354 1.22294 1.19779 0.92920 0.89378 0.90265 0.83140 0.79647 0.76895 0.97830 0.95934 0.94999 0.93930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.55 9.16 71.98 0.66 -3.89 16 2 C 0.25 10.29 3.26 44.24 0.14 10.44 16 3 H 0.10 4.06 7.87 -2.39 -0.02 4.04 16 4 C 0.17 7.56 7.25 88.33 0.64 8.20 16 5 N -0.31 -15.05 10.63 -165.24 -1.76 -16.81 16 6 N -0.30 -13.74 12.23 -166.49 -2.04 -15.77 16 7 C 0.21 8.37 8.24 87.05 0.72 9.09 16 8 C -0.18 -5.41 6.46 24.10 0.16 -5.25 16 9 C -0.06 -1.51 10.12 21.67 0.22 -1.29 16 10 C -0.14 -2.18 10.15 21.12 0.21 -1.97 16 11 C -0.17 -2.27 11.21 66.79 0.75 -1.53 16 12 S 0.16 3.46 23.31 -56.49 -1.32 2.14 16 13 O -0.24 -9.78 10.90 -10.98 -0.12 -9.90 16 14 N -0.58 -29.49 2.80 -707.00 -1.98 -31.47 16 15 C 0.18 9.75 7.38 127.77 0.94 10.69 16 16 C -0.29 -15.38 9.58 84.03 0.80 -14.58 16 17 H 0.09 4.44 7.83 -2.91 -0.02 4.42 16 18 C -0.04 -2.50 5.09 84.86 0.43 -2.07 16 19 N -0.93 -56.41 10.75 21.65 0.23 -56.18 16 20 Si 0.98 44.29 29.57 68.60 2.03 46.32 16 21 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 22 H -0.30 -13.66 7.11 99.48 0.71 -12.96 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 24 H 0.05 1.83 6.66 -2.39 -0.02 1.82 16 25 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 26 H 0.08 2.13 8.14 -2.39 -0.02 2.12 16 27 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 28 H 0.19 1.49 8.06 -2.91 -0.02 1.47 16 29 H 0.21 1.06 8.06 -2.91 -0.02 1.04 16 30 H 0.00 0.20 7.11 -2.39 -0.02 0.18 16 31 H 0.02 1.23 7.37 -2.38 -0.02 1.21 16 32 H 0.03 1.51 6.39 -2.39 -0.02 1.49 16 33 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -72.49 301.42 1.87 -70.63 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: 1.13 Total: 3.19 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: 5.68 Total: 7.85 kcal Atomic # 7 Polarization: -114.69 SS G_CDS: -5.54 Total: -120.23 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: -0.12 Total: -9.90 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: 3.46 SS G_CDS: -1.32 Total: 2.14 kcal Total: -72.49 1.87 -70.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972773.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.370 kcal (2) G-P(sol) polarization free energy of solvation -72.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds