Wall clock time and date at job start Tue Mar 31 2020 00:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37089 * 120.00117 * 2 1 4 4 H 1.08004 * 120.00240 * 151.18132 * 3 2 1 5 5 C 1.38951 * 120.00128 * 331.18377 * 3 2 1 6 6 N 1.31413 * 120.00480 * 161.62594 * 5 3 2 7 7 Si 1.86807 * 119.99812 * 341.62320 * 5 3 2 8 8 H 1.48499 * 109.46670 * 91.34176 * 7 5 3 9 9 H 1.48493 * 109.47112 * 211.34218 * 7 5 3 10 10 H 1.48498 * 109.47123 * 331.34482 * 7 5 3 11 11 C 1.34779 * 119.99732 * 179.97438 * 2 1 3 12 12 O 1.21298 * 119.99659 * 185.35932 * 11 2 1 13 13 C 1.50697 * 120.00409 * 5.36211 * 11 2 1 14 14 C 1.50704 * 115.55096 * 64.22293 * 13 11 2 15 15 C 1.38245 * 119.98312 * 33.59103 * 14 13 11 16 16 C 1.38207 * 120.01407 * 179.97438 * 15 14 13 17 17 C 1.38355 * 119.98649 * 0.02562 * 16 15 14 18 18 Cl 1.73600 * 120.01348 * 180.02562 * 17 16 15 19 19 C 1.38348 * 119.97106 * 359.97438 * 17 16 15 20 20 C 1.38216 * 119.99065 * 0.02562 * 19 17 16 21 21 C 1.52995 * 117.52113 * 209.93151 * 13 11 2 22 22 C 1.53000 * 60.00281 * 107.47728 * 21 13 11 23 23 H 1.09001 * 109.47036 * 234.69202 * 1 2 3 24 24 H 1.08995 * 109.47193 * 354.69016 * 1 2 3 25 25 H 1.08996 * 109.47102 * 114.69409 * 1 2 3 26 26 H 0.96995 * 119.99866 * 179.97438 * 6 5 3 27 27 H 1.08002 * 119.99195 * 359.69573 * 15 14 13 28 28 H 1.07998 * 120.00913 * 179.97438 * 16 15 14 29 29 H 1.08009 * 120.00539 * 179.97438 * 19 17 16 30 30 H 1.07993 * 119.99438 * 180.02562 * 20 19 17 31 31 H 1.08998 * 117.50078 * 214.96802 * 21 13 11 32 32 H 1.09003 * 117.49759 * 359.97438 * 21 13 11 33 33 H 1.09000 * 117.49938 * 252.50880 * 22 21 13 34 34 H 1.09007 * 117.49408 * 107.48800 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1302 1.2452 0.4509 5 6 1.5848 2.3161 -0.5800 6 7 2.0450 3.5098 -0.2797 7 14 0.1702 2.1368 -1.7868 8 1 -1.1187 2.2078 -1.0526 9 1 0.2310 3.2326 -2.7871 10 1 0.2736 0.8275 -2.4798 11 6 2.1388 -1.1672 0.0005 12 8 3.3478 -1.1695 0.0986 13 6 1.3903 -2.4695 -0.1208 14 6 0.6556 -2.6783 -1.4200 15 6 1.1743 -2.1703 -2.5964 16 6 0.5013 -2.3619 -3.7883 17 6 -0.6920 -3.0618 -3.8038 18 17 -1.5376 -3.3034 -5.3006 19 6 -1.2105 -3.5700 -2.6262 20 6 -0.5366 -3.3778 -1.4348 21 6 2.0005 -3.7010 0.5515 22 6 0.7563 -3.0409 1.1490 23 1 -0.3633 -0.5940 0.8386 24 1 -0.3633 1.0232 0.0951 25 1 -0.3633 -0.4293 -0.9336 26 1 1.6503 4.2978 -0.6849 27 1 2.1033 -1.6197 -2.5834 28 1 0.9064 -1.9646 -4.7072 29 1 -2.1423 -4.1162 -2.6376 30 1 -0.9411 -3.7748 -0.5156 31 1 1.8706 -4.6622 0.0542 32 1 2.9439 -3.5694 1.0815 33 1 0.8809 -2.4751 2.0723 34 1 -0.1922 -3.5679 1.0447 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069417199.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:49 Heat of formation + Delta-G solvation = 27.748471 kcal Electronic energy + Delta-G solvation = -19819.844196 eV Core-core repulsion = 16745.160616 eV Total energy + Delta-G solvation = -3074.683581 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.077 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.24105 -38.44127 -36.66458 -35.90183 -34.77146 -32.02505 -31.06133 -30.29309 -26.56423 -25.88888 -23.69195 -22.93154 -22.01840 -21.24688 -18.51365 -17.37679 -17.07108 -16.22981 -15.68255 -15.38810 -14.73464 -14.71130 -14.36948 -13.80356 -13.51989 -13.36932 -12.97736 -12.62836 -12.47080 -12.19342 -11.97461 -11.70514 -11.67587 -11.42833 -11.23585 -10.79603 -10.61558 -10.40868 -10.37208 -10.19807 -9.87815 -9.22338 -8.99890 -8.64085 -8.35168 -7.85145 -6.41703 -3.96077 1.13528 1.33080 2.10608 3.00186 3.19416 3.22605 3.44319 3.60039 4.03659 4.11946 4.36706 4.64410 4.77010 4.88703 4.98067 5.09249 5.22665 5.33735 5.35002 5.54274 5.68004 5.74623 5.83633 5.91489 6.00494 6.02875 6.08805 6.23134 6.26579 6.30616 6.37324 6.62962 6.82595 7.47918 8.19466 8.45861 8.89792 9.28837 9.71082 10.70126 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.015604 B = 0.007658 C = 0.005736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.924404 B = 3655.394026 C = 4880.547929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.455 5.455 3 C -0.316 4.316 4 H 0.112 0.888 5 C 0.055 3.945 6 N -0.866 5.866 7 Si 0.880 3.120 8 H -0.277 1.277 9 H -0.290 1.290 10 H -0.260 1.260 11 C 0.496 3.504 12 O -0.563 6.563 13 C -0.113 4.113 14 C -0.023 4.023 15 C -0.087 4.087 16 C -0.105 4.105 17 C -0.042 4.042 18 Cl -0.081 7.081 19 C -0.110 4.110 20 C -0.111 4.111 21 C -0.135 4.135 22 C -0.164 4.164 23 H 0.056 0.944 24 H 0.078 0.922 25 H 0.049 0.951 26 H 0.274 0.726 27 H 0.136 0.864 28 H 0.133 0.867 29 H 0.132 0.868 30 H 0.134 0.866 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.392 -14.230 -4.039 17.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.175 5.175 3 C -0.443 4.443 4 H 0.130 0.870 5 C -0.150 4.150 6 N -0.503 5.503 7 Si 0.708 3.292 8 H -0.204 1.204 9 H -0.217 1.217 10 H -0.184 1.184 11 C 0.283 3.717 12 O -0.445 6.445 13 C -0.117 4.117 14 C -0.024 4.024 15 C -0.105 4.105 16 C -0.124 4.124 17 C -0.068 4.068 18 Cl -0.052 7.052 19 C -0.129 4.129 20 C -0.129 4.129 21 C -0.172 4.172 22 C -0.201 4.201 23 H 0.075 0.925 24 H 0.097 0.903 25 H 0.067 0.933 26 H 0.085 0.915 27 H 0.154 0.846 28 H 0.151 0.849 29 H 0.150 0.850 30 H 0.152 0.848 31 H 0.116 0.884 32 H 0.125 0.875 33 H 0.120 0.880 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.862 -13.993 -4.148 17.075 hybrid contribution -1.024 0.236 -0.900 1.383 sum -9.886 -13.757 -5.048 17.677 Atomic orbital electron populations 1.22090 0.83316 1.02837 1.00578 1.43561 1.03987 1.05550 1.64420 1.19207 1.04428 0.83598 1.37099 0.87028 1.25294 0.97985 0.94788 0.96949 1.69714 1.42156 0.97638 1.40784 0.87054 0.81697 0.78643 0.81790 1.20401 1.21731 1.18403 1.18785 0.86909 0.83078 0.82956 1.90566 1.13768 1.86454 1.53681 1.20264 1.03635 0.96031 0.91765 1.18986 0.93979 0.96472 0.92935 1.21115 1.00358 0.98086 0.90990 1.21042 0.93740 0.98460 0.99152 1.20893 0.95415 1.03330 0.87196 1.98349 1.77539 1.95870 1.33431 1.20926 1.00473 1.00713 0.90786 1.20986 0.94628 0.99548 0.97739 1.22979 0.98013 0.94482 1.01747 1.23140 0.97552 1.03318 0.96055 0.92548 0.90319 0.93269 0.91515 0.84587 0.84945 0.85039 0.84805 0.88396 0.87464 0.87975 0.88096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.12 7.25 59.85 0.43 1.55 16 2 N -0.46 -10.92 2.76 -122.20 -0.34 -11.26 16 3 C -0.32 -8.90 9.63 -14.94 -0.14 -9.04 16 4 H 0.11 3.54 7.69 -52.48 -0.40 3.14 16 5 C 0.06 1.51 5.25 -17.47 -0.09 1.42 16 6 N -0.87 -25.01 13.96 55.50 0.77 -24.24 16 7 Si 0.88 20.50 24.29 -169.99 -4.13 16.37 16 8 H -0.28 -6.05 6.58 56.52 0.37 -5.68 16 9 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.26 -5.90 6.61 56.52 0.37 -5.53 16 11 C 0.50 11.33 5.84 -10.99 -0.06 11.26 16 12 O -0.56 -15.03 16.41 5.54 0.09 -14.94 16 13 C -0.11 -1.94 1.47 -156.81 -0.23 -2.17 16 14 C -0.02 -0.37 3.78 -104.62 -0.40 -0.76 16 15 C -0.09 -1.48 9.29 -39.59 -0.37 -1.84 16 16 C -0.11 -1.57 9.83 -39.55 -0.39 -1.95 16 17 C -0.04 -0.57 6.32 -39.50 -0.25 -0.81 16 18 Cl -0.08 -0.98 28.96 -51.86 -1.50 -2.48 16 19 C -0.11 -1.34 9.83 -39.55 -0.39 -1.73 16 20 C -0.11 -1.41 9.38 -39.59 -0.37 -1.78 16 21 C -0.13 -1.93 9.75 -26.73 -0.26 -2.19 16 22 C -0.16 -2.19 8.83 -26.73 -0.24 -2.43 16 23 H 0.06 0.96 7.32 -51.93 -0.38 0.58 16 24 H 0.08 1.67 4.31 -51.93 -0.22 1.45 16 25 H 0.05 0.95 5.66 -51.93 -0.29 0.65 16 26 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 27 H 0.14 2.58 7.44 -52.49 -0.39 2.19 16 28 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 29 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 30 H 0.13 1.35 5.92 -52.49 -0.31 1.04 16 31 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.11 1.67 7.97 -51.93 -0.41 1.25 16 33 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.10 1.04 6.08 -51.92 -0.32 0.73 16 LS Contribution 296.22 15.07 4.46 4.46 Total: -1.00 -31.21 296.22 -7.01 -38.21 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -3.62 Total: 4.34 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -2.75 Total: -10.48 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 0.44 Total: -35.50 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: 0.09 Total: -14.94 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.13 Total: 16.37 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -1.50 Total: -2.48 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.21 -7.01 -38.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069417199.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.962 kcal (2) G-P(sol) polarization free energy of solvation -31.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds