Wall clock time and date at job start Tue Mar 31 2020 00:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37089 * 120.00117 * 2 1 4 4 H 1.08004 * 120.00240 * 151.18132 * 3 2 1 5 5 C 1.38951 * 120.00128 * 331.18377 * 3 2 1 6 6 N 1.31413 * 120.00480 * 161.62594 * 5 3 2 7 7 Si 1.86807 * 119.99812 * 341.62320 * 5 3 2 8 8 H 1.48499 * 109.46670 * 91.34176 * 7 5 3 9 9 H 1.48493 * 109.47112 * 211.34218 * 7 5 3 10 10 H 1.48498 * 109.47123 * 331.34482 * 7 5 3 11 11 C 1.34779 * 119.99732 * 179.97438 * 2 1 3 12 12 O 1.21298 * 119.99659 * 185.35932 * 11 2 1 13 13 C 1.50697 * 120.00409 * 5.36211 * 11 2 1 14 14 C 1.50704 * 115.55096 * 64.22293 * 13 11 2 15 15 C 1.38245 * 119.98312 * 33.59103 * 14 13 11 16 16 C 1.38207 * 120.01407 * 179.97438 * 15 14 13 17 17 C 1.38355 * 119.98649 * 0.02562 * 16 15 14 18 18 Cl 1.73600 * 120.01348 * 180.02562 * 17 16 15 19 19 C 1.38348 * 119.97106 * 359.97438 * 17 16 15 20 20 C 1.38216 * 119.99065 * 0.02562 * 19 17 16 21 21 C 1.52995 * 117.52113 * 209.93151 * 13 11 2 22 22 C 1.53000 * 60.00281 * 107.47728 * 21 13 11 23 23 H 1.09001 * 109.47036 * 234.69202 * 1 2 3 24 24 H 1.08995 * 109.47193 * 354.69016 * 1 2 3 25 25 H 1.08996 * 109.47102 * 114.69409 * 1 2 3 26 26 H 0.96995 * 119.99866 * 179.97438 * 6 5 3 27 27 H 1.08002 * 119.99195 * 359.69573 * 15 14 13 28 28 H 1.07998 * 120.00913 * 179.97438 * 16 15 14 29 29 H 1.08009 * 120.00539 * 179.97438 * 19 17 16 30 30 H 1.07993 * 119.99438 * 180.02562 * 20 19 17 31 31 H 1.08998 * 117.50078 * 214.96802 * 21 13 11 32 32 H 1.09003 * 117.49759 * 359.97438 * 21 13 11 33 33 H 1.09000 * 117.49938 * 252.50880 * 22 21 13 34 34 H 1.09007 * 117.49408 * 107.48800 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1302 1.2452 0.4509 5 6 1.5848 2.3161 -0.5800 6 7 2.0450 3.5098 -0.2797 7 14 0.1702 2.1368 -1.7868 8 1 -1.1187 2.2078 -1.0526 9 1 0.2310 3.2326 -2.7871 10 1 0.2736 0.8275 -2.4798 11 6 2.1388 -1.1672 0.0005 12 8 3.3478 -1.1695 0.0986 13 6 1.3903 -2.4695 -0.1208 14 6 0.6556 -2.6783 -1.4200 15 6 1.1743 -2.1703 -2.5964 16 6 0.5013 -2.3619 -3.7883 17 6 -0.6920 -3.0618 -3.8038 18 17 -1.5376 -3.3034 -5.3006 19 6 -1.2105 -3.5700 -2.6262 20 6 -0.5366 -3.3778 -1.4348 21 6 2.0005 -3.7010 0.5515 22 6 0.7563 -3.0409 1.1490 23 1 -0.3633 -0.5940 0.8386 24 1 -0.3633 1.0232 0.0951 25 1 -0.3633 -0.4293 -0.9336 26 1 1.6503 4.2978 -0.6849 27 1 2.1033 -1.6197 -2.5834 28 1 0.9064 -1.9646 -4.7072 29 1 -2.1423 -4.1162 -2.6376 30 1 -0.9411 -3.7748 -0.5156 31 1 1.8706 -4.6622 0.0542 32 1 2.9439 -3.5694 1.0815 33 1 0.8809 -2.4751 2.0723 34 1 -0.1922 -3.5679 1.0447 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069417199.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:48 Heat of formation + Delta-G solvation = 8.031743 kcal Electronic energy + Delta-G solvation = -19820.699178 eV Core-core repulsion = 16745.160616 eV Total energy + Delta-G solvation = -3075.538562 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.077 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.59612 -39.85052 -37.84916 -37.14253 -36.60589 -34.11193 -32.11101 -31.36348 -28.36451 -27.65947 -25.07394 -24.01528 -23.18098 -22.59207 -20.02684 -19.13551 -18.56241 -17.79610 -17.39459 -16.59848 -16.12385 -15.96457 -15.79724 -15.31222 -14.67702 -14.58921 -14.53162 -14.41286 -14.01972 -13.87999 -13.58846 -12.87975 -12.78676 -12.57659 -12.52639 -12.28588 -12.23991 -11.80673 -11.78688 -11.53814 -11.41787 -11.17931 -10.42193 -10.04492 -9.84398 -9.45399 -8.54797 -6.14656 0.07037 0.28636 1.12076 1.15125 1.28496 1.40170 1.78412 2.12239 2.45777 2.58399 2.87307 3.05966 3.48100 3.71012 3.80896 3.90431 4.02756 4.06163 4.25194 4.30338 4.46101 4.53395 4.61532 4.68275 4.70955 4.81859 4.92070 4.99855 5.20048 5.24741 5.26070 5.45499 5.55166 5.77144 5.96267 6.47945 6.86137 7.25637 7.80837 8.62331 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.015604 B = 0.007658 C = 0.005736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.924404 B = 3655.394026 C = 4880.547929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.468 5.468 3 C -0.335 4.335 4 H 0.049 0.951 5 C 0.009 3.991 6 N -0.914 5.914 7 Si 0.951 3.049 8 H -0.240 1.240 9 H -0.294 1.294 10 H -0.253 1.253 11 C 0.493 3.507 12 O -0.620 6.620 13 C -0.135 4.135 14 C -0.032 4.032 15 C -0.118 4.118 16 C -0.114 4.114 17 C -0.046 4.046 18 Cl -0.068 7.068 19 C -0.097 4.097 20 C -0.095 4.095 21 C -0.132 4.132 22 C -0.132 4.132 23 H 0.094 0.906 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.280 0.720 27 H 0.094 0.906 28 H 0.134 0.866 29 H 0.168 0.832 30 H 0.174 0.826 31 H 0.130 0.870 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.067 -17.236 -4.507 22.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.188 5.188 3 C -0.463 4.463 4 H 0.067 0.933 5 C -0.193 4.193 6 N -0.552 5.552 7 Si 0.774 3.226 8 H -0.165 1.165 9 H -0.221 1.221 10 H -0.177 1.177 11 C 0.283 3.717 12 O -0.505 6.505 13 C -0.139 4.139 14 C -0.032 4.032 15 C -0.136 4.136 16 C -0.133 4.133 17 C -0.073 4.073 18 Cl -0.039 7.039 19 C -0.115 4.115 20 C -0.113 4.113 21 C -0.169 4.169 22 C -0.168 4.168 23 H 0.112 0.888 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.112 0.888 28 H 0.152 0.848 29 H 0.185 0.815 30 H 0.191 0.809 31 H 0.148 0.852 32 H 0.102 0.898 33 H 0.113 0.887 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -13.565 -17.012 -4.599 22.239 hybrid contribution 0.562 1.125 -0.736 1.457 sum -13.004 -15.887 -5.335 21.212 Atomic orbital electron populations 1.22244 0.80427 1.03084 1.03019 1.43632 1.05753 1.04484 1.64925 1.18797 1.03138 0.86268 1.38086 0.93274 1.26088 1.01368 0.93749 0.98066 1.69837 1.44526 0.98694 1.42149 0.85937 0.79302 0.78533 0.78823 1.16474 1.22091 1.17690 1.19866 0.86699 0.84930 0.80209 1.90521 1.16757 1.87752 1.55494 1.19989 1.05812 0.93317 0.94754 1.18920 0.95252 0.97857 0.91203 1.20913 0.99844 0.99959 0.92933 1.21048 0.94594 0.99148 0.98487 1.21028 0.94884 1.02858 0.88486 1.98359 1.76976 1.95722 1.32848 1.21350 1.01163 0.99300 0.89671 1.21293 0.92598 0.97881 0.99533 1.23095 0.97906 0.94689 1.01215 1.23375 0.98955 1.01229 0.93259 0.88798 0.91350 0.91616 0.90992 0.88769 0.84845 0.81453 0.80896 0.85174 0.89831 0.88668 0.83220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.07 7.25 127.77 0.93 3.00 16 2 N -0.47 -23.00 2.76 -658.90 -1.82 -24.82 16 3 C -0.33 -20.08 9.63 84.04 0.81 -19.27 16 4 H 0.05 3.47 7.69 -2.91 -0.02 3.44 16 5 C 0.01 0.50 5.25 84.93 0.45 0.94 16 6 N -0.91 -55.29 13.96 21.66 0.30 -54.99 16 7 Si 0.95 42.44 24.29 68.60 1.67 44.11 16 8 H -0.24 -9.32 6.58 99.48 0.65 -8.67 16 9 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 10 H -0.25 -10.94 6.61 99.48 0.66 -10.28 16 11 C 0.49 23.34 5.84 87.66 0.51 23.85 16 12 O -0.62 -35.69 16.41 -3.08 -0.05 -35.74 16 13 C -0.14 -4.39 1.47 -53.67 -0.08 -4.47 16 14 C -0.03 -0.91 3.78 -19.86 -0.08 -0.99 16 15 C -0.12 -3.95 9.29 22.26 0.21 -3.75 16 16 C -0.11 -3.23 9.83 22.29 0.22 -3.02 16 17 C -0.05 -1.07 6.32 22.32 0.14 -0.93 16 18 Cl -0.07 -1.41 28.96 -2.72 -0.08 -1.49 16 19 C -0.10 -1.79 9.83 22.29 0.22 -1.57 16 20 C -0.10 -1.86 9.38 22.26 0.21 -1.65 16 21 C -0.13 -3.47 9.75 30.59 0.30 -3.18 16 22 C -0.13 -2.94 8.83 30.60 0.27 -2.67 16 23 H 0.09 2.82 7.32 -2.39 -0.02 2.81 16 24 H 0.07 2.74 4.31 -2.39 -0.01 2.72 16 25 H 0.07 2.29 5.66 -2.39 -0.01 2.28 16 26 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 27 H 0.09 3.86 7.44 -2.91 -0.02 3.84 16 28 H 0.13 3.56 8.06 -2.91 -0.02 3.54 16 29 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 30 H 0.17 1.99 5.92 -2.91 -0.02 1.98 16 31 H 0.13 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.08 2.60 7.97 -2.39 -0.02 2.58 16 33 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.15 1.92 6.08 -2.38 -0.01 1.90 16 Total: -1.00 -76.54 296.22 5.15 -71.39 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 1.03 Total: 15.24 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: 4.10 Total: -13.70 kcal Atomic # 7 Polarization: -78.30 SS G_CDS: -1.52 Total: -79.81 kcal Atomic # 8 Polarization: -35.69 SS G_CDS: -0.05 Total: -35.74 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 1.67 Total: 44.11 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -0.08 Total: -1.49 kcal Total: -76.54 5.15 -71.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069417199.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.417 kcal (2) G-P(sol) polarization free energy of solvation -76.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds