Wall clock time and date at job start Tue Mar 31 2020 00:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47447 * 2 1 4 4 C 1.50701 * 109.46961 * 240.00685 * 2 1 3 5 5 H 1.08001 * 119.99956 * 239.99751 * 4 2 1 6 6 C 1.37880 * 120.00499 * 59.99413 * 4 2 1 7 7 N 1.31512 * 119.99434 * 0.02562 * 6 4 2 8 8 Si 1.86791 * 120.00294 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47222 * 60.00130 * 8 6 4 10 10 H 1.48500 * 109.47231 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47412 * 300.00392 * 8 6 4 12 12 N 1.46494 * 109.47612 * 120.00736 * 2 1 3 13 13 C 1.34784 * 119.99787 * 275.00174 * 12 2 1 14 14 O 1.21701 * 119.99612 * 359.97438 * 13 12 2 15 15 C 1.46377 * 120.00002 * 179.97438 * 13 12 2 16 16 C 1.34853 * 120.00159 * 173.21309 * 15 13 12 17 17 C 1.47156 * 119.99571 * 349.03904 * 16 15 13 18 18 C 1.39863 * 120.15960 * 316.10092 * 17 16 15 19 19 C 1.37846 * 119.84250 * 179.79075 * 18 17 16 20 20 C 1.38547 * 120.15205 * 0.48704 * 19 18 17 21 21 Cl 1.73600 * 119.83660 * 179.76384 * 20 19 18 22 22 C 1.38547 * 120.32207 * 359.74835 * 20 19 18 23 23 C 1.37834 * 120.15467 * 0.02562 * 22 20 19 24 24 H 1.09004 * 109.46934 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47108 * 59.99503 * 1 2 3 26 26 H 1.09003 * 109.46839 * 299.99271 * 1 2 3 27 27 H 0.97003 * 119.99774 * 179.97438 * 7 6 4 28 28 H 0.96996 * 120.00688 * 94.99330 * 12 2 1 29 29 H 1.07996 * 120.00124 * 353.21918 * 15 13 12 30 30 H 1.07998 * 120.00248 * 169.03693 * 16 15 13 31 31 H 1.08000 * 120.08159 * 0.02562 * 18 17 16 32 32 H 1.07998 * 119.92088 * 180.20923 * 19 18 17 33 33 H 1.08000 * 119.92399 * 179.97438 * 22 20 19 34 34 H 1.08004 * 120.07697 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1316 6 6 1.6991 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6033 8 14 2.3211 -1.1200 -4.0081 9 1 1.8257 -2.5199 -4.0079 10 1 1.8267 -0.4196 -5.2205 11 1 3.8062 -1.1207 -4.0084 12 7 2.0184 -0.6907 1.1960 13 6 2.1471 -0.0184 2.3571 14 8 1.8580 1.1625 2.4117 15 6 2.6346 -0.7087 3.5523 16 6 2.8938 -0.0097 4.6761 17 6 2.9211 1.4611 4.6378 18 6 3.5697 2.1248 3.5914 19 6 3.5876 3.5028 3.5597 20 6 2.9738 4.2301 4.5666 21 17 3.0066 5.9652 4.5218 22 6 2.3337 3.5793 5.6089 23 6 2.3039 2.2020 5.6510 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 0.5137 0.8901 27 1 0.7093 1.1620 -3.4843 28 1 2.2491 -1.6318 1.1524 29 1 2.7869 -1.7777 3.5342 30 1 3.0812 -0.5294 5.6041 31 1 4.0521 1.5591 2.8080 32 1 4.0851 4.0166 2.7505 33 1 1.8577 4.1526 6.3906 34 1 1.8041 1.6960 6.4639 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255911368.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:44 Heat of formation + Delta-G solvation = 0.613343 kcal Electronic energy + Delta-G solvation = -18828.559096 eV Core-core repulsion = 15752.698848 eV Total energy + Delta-G solvation = -3075.860248 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.077 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.66389 -38.34557 -36.36022 -34.93588 -33.36796 -32.40239 -30.87112 -29.73178 -28.44082 -25.27544 -23.93575 -22.54734 -21.79004 -20.05581 -19.11187 -17.52717 -16.58022 -16.07794 -15.35353 -15.15867 -14.81821 -14.28357 -13.94694 -13.72483 -13.29369 -13.22806 -13.08355 -12.57411 -12.35971 -11.71174 -11.60378 -11.37884 -11.19918 -11.08414 -10.97529 -10.76535 -10.66561 -10.33590 -10.24776 -9.62911 -9.19257 -9.06837 -8.71892 -8.55586 -7.90351 -7.78685 -6.13712 -4.23471 0.83732 1.59751 1.97215 2.28383 3.24153 3.29790 3.30664 3.91242 3.94805 4.14221 4.39644 4.81335 4.95952 5.05162 5.18397 5.29119 5.47134 5.54668 5.66312 5.88820 6.07714 6.15298 6.30081 6.43687 6.53072 6.74783 6.82786 6.95913 7.00438 7.14014 7.44157 7.55272 7.68389 7.90075 8.13610 8.65096 8.76540 9.11500 9.44342 10.92097 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.021056 B = 0.004269 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.457991 B = 6557.771856 C = 7394.572942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.265 3.735 3 H 0.049 0.951 4 C -0.536 4.536 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.700 5.700 13 C 0.519 3.481 14 O -0.542 6.542 15 C -0.190 4.190 16 C -0.052 4.052 17 C -0.055 4.055 18 C -0.017 4.017 19 C -0.121 4.121 20 C -0.025 4.025 21 Cl -0.085 7.085 22 C -0.128 4.128 23 C -0.095 4.095 24 H 0.025 0.975 25 H 0.089 0.911 26 H 0.015 0.985 27 H 0.265 0.735 28 H 0.388 0.612 29 H 0.129 0.871 30 H 0.133 0.867 31 H 0.125 0.875 32 H 0.129 0.871 33 H 0.127 0.873 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.704 0.498 15.473 16.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.067 0.933 4 C -0.574 4.574 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.346 5.346 13 C 0.306 3.694 14 O -0.423 6.423 15 C -0.211 4.211 16 C -0.072 4.072 17 C -0.056 4.056 18 C -0.035 4.035 19 C -0.140 4.140 20 C -0.051 4.051 21 Cl -0.056 7.056 22 C -0.147 4.147 23 C -0.113 4.113 24 H 0.044 0.956 25 H 0.108 0.892 26 H 0.034 0.966 27 H 0.075 0.925 28 H 0.221 0.779 29 H 0.147 0.853 30 H 0.150 0.850 31 H 0.143 0.857 32 H 0.147 0.853 33 H 0.145 0.855 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.391 1.618 15.283 15.983 hybrid contribution 0.216 -0.907 -1.031 1.390 sum 4.607 0.711 14.252 14.995 Atomic orbital electron populations 1.22066 0.98460 0.99040 1.00905 1.18733 0.91019 0.93964 0.79983 0.93303 1.21180 1.32599 1.13278 0.90374 0.92166 1.24883 0.94776 0.94934 0.99047 1.69894 1.35731 1.22368 1.24016 0.86513 0.79162 0.79598 0.81848 1.20164 1.21111 1.20173 1.46562 1.63985 1.13569 1.10528 1.18419 0.79862 0.87248 0.83918 1.90841 1.51510 1.15242 1.84690 1.23328 1.02788 1.00537 0.94475 1.22217 0.95354 0.92258 0.97348 1.18929 0.98681 0.92889 0.95060 1.21074 0.94949 0.93132 0.94380 1.20845 1.01141 0.93994 0.97987 1.20963 1.02547 0.83593 0.98029 1.98343 1.97511 1.11367 1.98405 1.20742 1.01203 0.94455 0.98268 1.21051 0.99133 0.92910 0.98224 0.95565 0.89202 0.96636 0.92498 0.77920 0.85292 0.84977 0.85748 0.85316 0.85526 0.85545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.26 37.16 0.34 -3.30 16 2 C 0.26 6.63 2.56 -69.09 -0.18 6.46 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 4 C -0.54 -14.03 8.73 -34.44 -0.30 -14.33 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -24.80 11.32 55.43 0.63 -24.17 16 8 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 9 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 12 N -0.70 -14.13 5.06 -56.34 -0.29 -14.42 16 13 C 0.52 9.85 6.76 -12.98 -0.09 9.76 16 14 O -0.54 -12.05 11.82 5.19 0.06 -11.99 16 15 C -0.19 -2.61 9.91 -37.51 -0.37 -2.99 16 16 C -0.05 -0.64 9.81 -37.16 -0.36 -1.00 16 17 C -0.06 -0.80 4.53 -105.06 -0.48 -1.28 16 18 C -0.02 -0.27 6.60 -39.12 -0.26 -0.53 16 19 C -0.12 -1.90 9.81 -39.61 -0.39 -2.29 16 20 C -0.02 -0.37 6.33 -39.35 -0.25 -0.61 16 21 Cl -0.09 -1.14 28.95 -51.86 -1.50 -2.64 16 22 C -0.13 -1.70 9.81 -39.62 -0.39 -2.09 16 23 C -0.09 -1.23 9.79 -39.12 -0.38 -1.62 16 24 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 26 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.39 6.75 8.52 -40.82 -0.35 6.41 16 29 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 31 H 0.12 2.09 7.03 -52.49 -0.37 1.72 16 32 H 0.13 1.92 8.06 -52.49 -0.42 1.49 16 33 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 LS Contribution 309.02 15.07 4.66 4.66 Total: -1.00 -30.12 309.02 -8.58 -38.70 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -3.93 Total: 6.53 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -3.20 Total: -12.13 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.34 Total: -38.59 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.06 Total: -11.99 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -1.50 Total: -2.64 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.12 -8.58 -38.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255911368.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.316 kcal (2) G-P(sol) polarization free energy of solvation -30.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds