Wall clock time and date at job start Tue Mar 31 2020 00:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 115.56560 * 2 1 4 4 C 1.53082 * 117.51134 * 214.29660 * 2 1 3 5 5 C 1.53003 * 59.98412 * 252.52206 * 4 2 1 6 6 H 1.08997 * 117.49782 * 252.50204 * 5 4 2 7 7 C 1.50703 * 117.49787 * 107.49730 * 5 4 2 8 8 O 1.21276 * 120.00136 * 296.44100 * 7 5 4 9 9 N 1.34774 * 119.99318 * 116.43572 * 7 5 4 10 10 C 1.37129 * 120.00721 * 3.66152 * 9 7 5 11 11 H 1.08006 * 119.99554 * 308.26939 * 10 9 7 12 12 C 1.38880 * 120.00609 * 128.26282 * 10 9 7 13 13 N 1.31423 * 120.00358 * 173.06496 * 12 10 9 14 14 Si 1.86804 * 119.99916 * 353.06653 * 12 10 9 15 15 H 1.48509 * 109.46925 * 95.34210 * 14 12 10 16 16 H 1.48497 * 109.47555 * 215.34314 * 14 12 10 17 17 H 1.48498 * 109.47248 * 335.34750 * 14 12 10 18 18 C 1.39814 * 119.99708 * 183.65576 * 9 7 5 19 19 C 1.38954 * 120.06508 * 351.40829 * 18 9 7 20 20 C 1.38076 * 119.93652 * 180.24924 * 19 18 9 21 21 C 1.38413 * 120.06191 * 0.02981 * 20 19 18 22 22 Cl 1.73604 * 119.93415 * 179.97438 * 21 20 19 23 23 C 1.38416 * 120.13390 * 359.97438 * 21 20 19 24 24 C 1.38076 * 120.06121 * 359.97438 * 23 21 20 25 25 H 1.09001 * 109.47017 * 274.31247 * 1 2 3 26 26 H 1.08994 * 109.46894 * 34.30654 * 1 2 3 27 27 H 1.08994 * 109.47069 * 154.31327 * 1 2 3 28 28 H 1.08997 * 117.49354 * 145.03568 * 4 2 1 29 29 H 1.08997 * 117.53020 * 359.97438 * 4 2 1 30 30 H 0.96997 * 120.00394 * 179.97438 * 13 12 10 31 31 H 1.08006 * 120.03386 * 0.26027 * 19 18 9 32 32 H 1.08005 * 119.96514 * 180.02562 * 20 19 18 33 33 H 1.08000 * 119.97273 * 180.02562 * 23 21 20 34 34 H 1.07999 * 120.02879 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2371 -1.1217 -0.7650 5 6 2.2365 -1.1211 0.7650 6 1 3.1714 -0.8751 1.2685 7 6 1.3720 -2.1406 1.4608 8 8 0.1672 -2.1078 1.3255 9 7 1.9378 -3.0889 2.2335 10 6 3.2923 -3.0813 2.4472 11 1 3.9710 -3.0304 1.6085 12 6 3.7915 -3.1388 3.7419 13 7 5.0837 -3.2690 3.9428 14 14 2.6261 -3.0312 5.1979 15 1 2.2800 -4.4005 5.6571 16 1 3.2829 -2.2895 6.3040 17 1 1.3889 -2.3185 4.7900 18 6 1.1436 -4.0805 2.8173 19 6 -0.2415 -3.9911 2.7522 20 6 -1.0233 -4.9692 3.3341 21 6 -0.4284 -6.0377 3.9824 22 17 -1.4146 -7.2653 4.7135 23 6 0.9511 -6.1295 4.0490 24 6 1.7379 -5.1549 3.4680 25 1 -0.3633 0.0773 1.0248 26 1 -0.3633 0.8488 -0.5792 27 1 -0.3633 -0.9261 -0.4454 28 1 3.1723 -0.8758 -1.2680 29 1 1.6126 -1.8599 -1.2680 30 1 5.4324 -3.3088 4.8470 31 1 -0.7062 -3.1574 2.2467 32 1 -2.0999 -4.9004 3.2834 33 1 1.4125 -6.9646 4.5551 34 1 2.8142 -5.2273 3.5199 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592651663.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:44 Heat of formation + Delta-G solvation = 18.384036 kcal Electronic energy + Delta-G solvation = -19804.715753 eV Core-core repulsion = 16729.626100 eV Total energy + Delta-G solvation = -3075.089653 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.077 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.00260 -39.87167 -37.96695 -37.12507 -36.70068 -34.18996 -31.99634 -30.90523 -29.31444 -27.25342 -25.46358 -23.72032 -22.86498 -21.82090 -20.86374 -19.51432 -18.39320 -17.76865 -17.47124 -16.59512 -16.11930 -15.87410 -15.55253 -15.09371 -14.86292 -14.68323 -14.46323 -14.25823 -13.80119 -13.56752 -13.35013 -13.25685 -12.97237 -12.81173 -12.42941 -12.32728 -12.28344 -12.06881 -11.78293 -11.25652 -11.08047 -10.85073 -10.75098 -10.02685 -9.87719 -8.88772 -8.56615 -6.48615 0.12229 0.33493 1.18464 1.19615 1.27629 1.34670 1.63980 2.08867 2.34966 2.62720 2.84372 3.07030 3.71997 3.85376 3.96250 3.98126 4.09687 4.36805 4.40785 4.47744 4.52708 4.71393 4.87040 5.00083 5.03167 5.04308 5.11978 5.16097 5.23562 5.35727 5.40662 5.47160 5.62316 5.80121 5.99981 6.25115 6.80352 7.18231 7.50352 8.47581 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.016788 B = 0.007451 C = 0.005650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.452431 B = 3756.835400 C = 4954.520205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.115 4.115 3 H 0.133 0.867 4 C -0.136 4.136 5 C -0.194 4.194 6 H 0.121 0.879 7 C 0.520 3.480 8 O -0.557 6.557 9 N -0.419 5.419 10 C -0.354 4.354 11 H 0.093 0.907 12 C 0.060 3.940 13 N -0.886 5.886 14 Si 0.904 3.096 15 H -0.240 1.240 16 H -0.285 1.285 17 H -0.279 1.279 18 C 0.140 3.860 19 C -0.187 4.187 20 C -0.087 4.087 21 C -0.080 4.080 22 Cl -0.070 7.070 23 C -0.091 4.091 24 C -0.162 4.162 25 H 0.044 0.956 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.123 0.877 29 H 0.090 0.910 30 H 0.284 0.716 31 H 0.182 0.818 32 H 0.153 0.847 33 H 0.147 0.853 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.492 0.418 -2.915 8.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.134 4.134 3 H 0.151 0.849 4 C -0.173 4.173 5 C -0.215 4.215 6 H 0.139 0.861 7 C 0.314 3.686 8 O -0.440 6.440 9 N -0.128 5.128 10 C -0.481 4.481 11 H 0.111 0.889 12 C -0.147 4.147 13 N -0.521 5.521 14 Si 0.730 3.270 15 H -0.164 1.164 16 H -0.212 1.212 17 H -0.205 1.205 18 C 0.043 3.957 19 C -0.207 4.207 20 C -0.107 4.107 21 C -0.107 4.107 22 Cl -0.041 7.041 23 C -0.110 4.110 24 C -0.183 4.183 25 H 0.063 0.937 26 H 0.091 0.909 27 H 0.069 0.931 28 H 0.141 0.859 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.198 0.802 32 H 0.171 0.829 33 H 0.165 0.835 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.918 0.366 -2.824 8.415 hybrid contribution 0.210 -0.330 1.135 1.200 sum -7.708 0.037 -1.690 7.891 Atomic orbital electron populations 1.21276 0.92068 1.01529 1.01278 1.22563 0.96146 0.94114 1.00545 0.84931 1.23107 1.03438 1.01105 0.89677 1.22114 1.02200 1.00688 0.96452 0.86080 1.20575 0.87401 0.80934 0.79655 1.90184 1.15205 1.73641 1.65002 1.41545 1.07419 1.21157 1.42658 1.18839 0.79254 1.55780 0.94220 0.88933 1.25759 0.96247 0.93234 0.99503 1.69688 1.12847 1.45586 1.23935 0.86476 0.79522 0.80510 0.80518 1.16372 1.21187 1.20473 1.18829 0.91520 0.89750 0.95623 1.22805 0.91908 1.02823 1.03204 1.21218 1.01107 0.92152 0.96178 1.20874 0.91392 0.94053 1.04430 1.98309 1.69989 1.53884 1.81943 1.20962 0.91685 0.99081 0.99277 1.20998 1.01090 0.94434 1.01782 0.93732 0.90930 0.93126 0.85886 0.89199 0.90550 0.80208 0.82917 0.83508 0.85075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.00 8.43 71.98 0.61 -2.39 16 2 C -0.12 -3.26 6.41 -10.76 -0.07 -3.33 16 3 H 0.13 3.02 8.14 -2.39 -0.02 3.00 16 4 C -0.14 -3.90 9.88 30.62 0.30 -3.59 16 5 C -0.19 -7.07 5.33 -11.54 -0.06 -7.13 16 6 H 0.12 4.69 7.31 -2.39 -0.02 4.68 16 7 C 0.52 22.69 7.33 87.66 0.64 23.33 16 8 O -0.56 -24.13 9.55 -3.02 -0.03 -24.16 16 9 N -0.42 -19.84 2.26 -458.90 -1.04 -20.88 16 10 C -0.35 -17.87 7.67 84.02 0.64 -17.23 16 11 H 0.09 4.94 7.89 -2.91 -0.02 4.91 16 12 C 0.06 3.06 4.29 84.91 0.36 3.42 16 13 N -0.89 -46.94 13.96 21.65 0.30 -46.63 16 14 Si 0.90 42.24 24.16 68.60 1.66 43.90 16 15 H -0.24 -10.61 6.04 99.48 0.60 -10.01 16 16 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 17 H -0.28 -13.89 6.90 99.48 0.69 -13.21 16 18 C 0.14 6.36 4.40 38.21 0.17 6.52 16 19 C -0.19 -7.78 9.03 22.40 0.20 -7.58 16 20 C -0.09 -3.08 9.82 22.27 0.22 -2.87 16 21 C -0.08 -2.75 6.32 22.35 0.14 -2.61 16 22 Cl -0.07 -1.99 28.95 -2.72 -0.08 -2.07 16 23 C -0.09 -3.37 9.54 22.27 0.21 -3.16 16 24 C -0.16 -7.03 5.78 22.40 0.13 -6.90 16 25 H 0.04 1.45 7.40 -2.39 -0.02 1.43 16 26 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.05 1.60 6.88 -2.39 -0.02 1.58 16 28 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 29 H 0.09 2.66 8.05 -2.39 -0.02 2.64 16 30 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 31 H 0.18 7.71 4.58 -58.45 -0.27 7.44 16 32 H 0.15 4.43 8.06 -2.91 -0.02 4.40 16 33 H 0.15 4.69 8.06 -2.91 -0.02 4.67 16 34 H 0.13 6.11 5.70 -2.91 -0.02 6.09 16 Total: -1.00 -55.36 289.83 5.06 -50.30 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: 0.74 Total: 23.05 kcal Atomic # 6 Polarization: -27.02 SS G_CDS: 3.50 Total: -23.52 kcal Atomic # 7 Polarization: -66.77 SS G_CDS: -0.74 Total: -67.51 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.03 Total: -24.16 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 1.66 Total: 43.90 kcal Atomic # 17 Polarization: -1.99 SS G_CDS: -0.08 Total: -2.07 kcal Total: -55.36 5.06 -50.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592651663.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.685 kcal (2) G-P(sol) polarization free energy of solvation -55.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds