Wall clock time and date at job start Tue Mar 31 2020 00:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.45199 * 109.47010 * 2 1 4 4 C 1.34635 * 117.00112 * 180.02562 * 3 2 1 5 5 O 1.21505 * 120.00070 * 0.02562 * 4 3 2 6 6 N 1.34777 * 120.00127 * 179.97438 * 4 3 2 7 7 C 1.39413 * 120.00236 * 185.31395 * 6 4 3 8 8 C 1.39161 * 119.91602 * 33.69870 * 7 6 4 9 9 C 1.37634 * 120.08440 * 180.23680 * 8 7 6 10 10 C 1.39849 * 119.91402 * 359.46266 * 9 8 7 11 11 C 1.47393 * 120.08078 * 180.30445 * 10 9 8 12 12 O 1.21546 * 119.99988 * 0.02562 * 11 10 9 13 13 O 1.34771 * 119.99828 * 179.97438 * 11 10 9 14 14 C 1.34868 * 117.00029 * 179.97438 * 13 11 10 15 15 H 1.08004 * 119.99891 * 359.97438 * 14 13 11 16 16 C 1.38790 * 120.00217 * 180.02562 * 14 13 11 17 17 N 1.31429 * 119.99856 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00179 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47194 * 59.99861 * 18 16 14 20 20 H 1.48505 * 109.47363 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47328 * 299.99839 * 18 16 14 22 22 C 1.39847 * 119.83490 * 0.28236 * 10 9 8 23 23 C 1.37631 * 119.91769 * 359.97438 * 22 10 9 24 24 H 1.08992 * 109.47113 * 60.00153 * 1 2 3 25 25 H 1.09005 * 109.46808 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46719 * 299.99695 * 1 2 3 27 27 H 1.09000 * 109.46719 * 240.00305 * 2 1 3 28 28 H 1.08993 * 109.47391 * 120.00311 * 2 1 3 29 29 H 0.97001 * 119.99947 * 5.32304 * 6 4 3 30 30 H 1.08005 * 119.95782 * 359.97438 * 8 7 6 31 31 H 1.07999 * 120.04354 * 179.74524 * 9 8 7 32 32 H 0.97003 * 119.99419 * 180.02562 * 17 16 14 33 33 H 1.08002 * 120.04017 * 180.02562 * 22 10 9 34 34 H 1.08003 * 119.95530 * 180.02562 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3488 1.5454 -0.0005 5 8 4.0890 0.5819 -0.0015 6 7 3.8639 2.7909 -0.0011 7 6 5.2412 2.9756 -0.1135 8 6 5.9988 2.0970 -0.8820 9 6 7.3595 2.2732 -0.9913 10 6 7.9788 3.3434 -0.3381 11 6 9.4347 3.5395 -0.4582 12 8 10.0984 2.7708 -1.1260 13 8 10.0298 4.5717 0.1717 14 6 11.3645 4.6937 0.0210 15 1 11.9071 3.9813 -0.5828 16 6 12.0410 5.7339 0.6427 17 7 11.3808 6.6005 1.3779 18 14 13.8894 5.9032 0.4334 19 1 14.2109 6.0758 -1.0061 20 1 14.3672 7.0869 1.1922 21 1 14.5597 4.6817 0.9472 22 6 7.2134 4.2274 0.4290 23 6 5.8540 4.0416 0.5380 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.2764 3.5587 0.0768 30 1 5.5192 1.2732 -1.3898 31 1 7.9474 1.5885 -1.5846 32 1 11.8536 7.3278 1.8121 33 1 7.6882 5.0552 0.9345 34 1 5.2622 4.7241 1.1299 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000010701405.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:58 Heat of formation + Delta-G solvation = -130.623867 kcal Electronic energy + Delta-G solvation = -20430.586482 eV Core-core repulsion = 16908.326197 eV Total energy + Delta-G solvation = -3522.260285 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.05155 -39.44693 -38.44916 -36.80782 -35.29943 -34.74041 -32.21565 -32.03630 -30.75748 -29.67907 -25.65425 -24.38785 -23.02291 -22.69422 -21.41509 -20.17708 -19.12505 -17.77129 -17.60899 -17.20220 -16.88839 -16.29652 -15.26114 -14.88398 -14.49537 -14.45977 -14.17367 -14.04314 -13.87834 -13.23387 -13.15003 -12.84009 -12.72896 -12.25053 -12.06271 -11.97802 -11.59019 -11.27896 -11.05740 -10.85973 -10.76211 -10.48712 -10.47261 -10.18553 -9.84968 -9.07289 -8.74520 -8.60843 -8.05438 -6.46614 -4.08748 1.06584 1.66929 1.83484 2.53882 3.15249 3.18003 3.22042 3.50686 3.84970 3.92928 4.35028 4.57542 4.58180 4.61289 4.92733 5.02260 5.13802 5.14877 5.21207 5.39604 5.51561 5.57959 5.60784 5.70209 6.02785 6.12967 6.25985 6.43626 6.48804 6.71470 7.02272 7.11918 7.15549 7.37256 7.91734 8.03363 8.70152 9.02364 9.82712 10.71087 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.057929 B = 0.002939 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.230382 B = 9523.325529 C = 9891.897717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.081 3.919 3 O -0.370 6.370 4 C 0.647 3.353 5 O -0.550 6.550 6 N -0.646 5.646 7 C 0.162 3.838 8 C -0.132 4.132 9 C -0.050 4.050 10 C -0.097 4.097 11 C 0.433 3.567 12 O -0.554 6.554 13 O -0.205 6.205 14 C -0.373 4.373 15 H 0.097 0.903 16 C 0.041 3.959 17 N -0.860 5.860 18 Si 0.946 3.054 19 H -0.269 1.269 20 H -0.278 1.278 21 H -0.269 1.269 22 C -0.051 4.051 23 C -0.151 4.151 24 H 0.067 0.933 25 H 0.083 0.917 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.417 0.583 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.271 0.729 33 H 0.148 0.852 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.602 -6.452 -1.172 21.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.007 3.993 3 O -0.284 6.284 4 C 0.401 3.599 5 O -0.437 6.437 6 N -0.297 5.297 7 C 0.068 3.932 8 C -0.152 4.152 9 C -0.069 4.069 10 C -0.099 4.099 11 C 0.281 3.719 12 O -0.453 6.453 13 O -0.112 6.112 14 C -0.449 4.449 15 H 0.115 0.885 16 C -0.164 4.164 17 N -0.496 5.496 18 Si 0.770 3.230 19 H -0.194 1.194 20 H -0.203 1.203 21 H -0.194 1.194 22 C -0.070 4.070 23 C -0.171 4.171 24 H 0.086 0.914 25 H 0.101 0.899 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.253 0.747 30 H 0.154 0.846 31 H 0.156 0.844 32 H 0.081 0.919 33 H 0.166 0.834 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -20.143 -6.993 -1.206 21.356 hybrid contribution 0.552 0.367 0.025 0.664 sum -19.590 -6.625 -1.181 20.714 Atomic orbital electron populations 1.21839 0.92399 1.03192 1.03596 1.23018 0.94873 0.78321 1.03127 1.86228 1.21637 1.33720 1.86837 1.18048 0.81348 0.84153 0.76382 1.91053 1.59473 1.39424 1.53743 1.41843 1.06527 1.06324 1.75053 1.17583 0.80570 0.97553 0.97452 1.20959 0.93700 1.00671 0.99886 1.21102 0.93440 0.95733 0.96658 1.19467 0.91745 0.97410 1.01318 1.20684 0.87842 0.81994 0.81380 1.90633 1.65722 1.46610 1.42327 1.83896 1.24462 1.42297 1.60533 1.21265 0.79075 1.12987 1.31618 0.88513 1.25374 1.00747 0.94742 0.95508 1.69970 1.36723 1.13894 1.29049 0.85700 0.80222 0.78153 0.78879 1.19394 1.20334 1.19389 1.21420 0.92275 0.98120 0.95207 1.20756 0.95053 0.99499 1.01828 0.91401 0.89858 0.91409 0.90897 0.90896 0.74673 0.84595 0.84398 0.91875 0.83385 0.85136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 10.29 37.16 0.38 -0.39 16 2 C 0.08 0.65 6.19 37.16 0.23 0.88 16 3 O -0.37 -3.81 10.27 -40.31 -0.41 -4.22 16 4 C 0.65 8.25 8.47 54.06 0.46 8.71 16 5 O -0.55 -8.74 13.82 -19.28 -0.27 -9.00 16 6 N -0.65 -7.38 5.32 -14.26 -0.08 -7.45 16 7 C 0.16 2.31 6.27 -83.73 -0.53 1.78 16 8 C -0.13 -2.12 8.62 -39.46 -0.34 -2.46 16 9 C -0.05 -0.92 9.58 -39.20 -0.38 -1.30 16 10 C -0.10 -2.02 5.88 -104.97 -0.62 -2.64 16 11 C 0.43 11.22 7.83 34.46 0.27 11.49 16 12 O -0.55 -15.50 15.59 -19.30 -0.30 -15.80 16 13 O -0.21 -5.89 8.98 -21.79 -0.20 -6.09 16 14 C -0.37 -11.05 9.65 30.94 0.30 -10.75 16 15 H 0.10 2.88 6.86 -52.48 -0.36 2.52 16 16 C 0.04 1.14 5.49 -17.52 -0.10 1.05 16 17 N -0.86 -24.72 13.67 55.49 0.76 -23.97 16 18 Si 0.95 21.16 29.55 -169.99 -5.02 16.13 16 19 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 20 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 21 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 22 C -0.05 -0.92 9.61 -39.20 -0.38 -1.29 16 23 C -0.15 -2.15 9.94 -39.46 -0.39 -2.54 16 24 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.42 3.32 8.92 -40.82 -0.36 2.96 16 30 H 0.14 2.12 6.42 -52.48 -0.34 1.78 16 31 H 0.14 2.50 7.64 -52.49 -0.40 2.10 16 32 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 33 H 0.15 2.76 7.60 -52.49 -0.40 2.37 16 34 H 0.13 1.42 8.06 -52.48 -0.42 0.99 16 LS Contribution 310.86 15.07 4.68 4.68 Total: -1.00 -34.73 310.86 -5.45 -40.18 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -3.53 Total: 3.00 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -1.08 Total: 2.54 kcal Atomic # 7 Polarization: -32.10 SS G_CDS: 0.68 Total: -31.42 kcal Atomic # 8 Polarization: -33.94 SS G_CDS: -1.18 Total: -35.11 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -34.73 -5.45 -40.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010701405.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.447 kcal (2) G-P(sol) polarization free energy of solvation -34.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds