Wall clock time and date at job start Tue Mar 31 2020 00:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.45199 * 109.47010 * 2 1 4 4 C 1.34635 * 117.00112 * 180.02562 * 3 2 1 5 5 O 1.21505 * 120.00070 * 0.02562 * 4 3 2 6 6 N 1.34777 * 120.00127 * 179.97438 * 4 3 2 7 7 C 1.39413 * 120.00236 * 185.31395 * 6 4 3 8 8 C 1.39161 * 119.91602 * 33.69870 * 7 6 4 9 9 C 1.37634 * 120.08440 * 180.23680 * 8 7 6 10 10 C 1.39849 * 119.91402 * 359.46266 * 9 8 7 11 11 C 1.47393 * 120.08078 * 180.30445 * 10 9 8 12 12 O 1.21546 * 119.99988 * 0.02562 * 11 10 9 13 13 O 1.34771 * 119.99828 * 179.97438 * 11 10 9 14 14 C 1.34868 * 117.00029 * 179.97438 * 13 11 10 15 15 H 1.08004 * 119.99891 * 359.97438 * 14 13 11 16 16 C 1.38790 * 120.00217 * 180.02562 * 14 13 11 17 17 N 1.31429 * 119.99856 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00179 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47194 * 59.99861 * 18 16 14 20 20 H 1.48505 * 109.47363 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47328 * 299.99839 * 18 16 14 22 22 C 1.39847 * 119.83490 * 0.28236 * 10 9 8 23 23 C 1.37631 * 119.91769 * 359.97438 * 22 10 9 24 24 H 1.08992 * 109.47113 * 60.00153 * 1 2 3 25 25 H 1.09005 * 109.46808 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46719 * 299.99695 * 1 2 3 27 27 H 1.09000 * 109.46719 * 240.00305 * 2 1 3 28 28 H 1.08993 * 109.47391 * 120.00311 * 2 1 3 29 29 H 0.97001 * 119.99947 * 5.32304 * 6 4 3 30 30 H 1.08005 * 119.95782 * 359.97438 * 8 7 6 31 31 H 1.07999 * 120.04354 * 179.74524 * 9 8 7 32 32 H 0.97003 * 119.99419 * 180.02562 * 17 16 14 33 33 H 1.08002 * 120.04017 * 180.02562 * 22 10 9 34 34 H 1.08003 * 119.95530 * 180.02562 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3488 1.5454 -0.0005 5 8 4.0890 0.5819 -0.0015 6 7 3.8639 2.7909 -0.0011 7 6 5.2412 2.9756 -0.1135 8 6 5.9988 2.0970 -0.8820 9 6 7.3595 2.2732 -0.9913 10 6 7.9788 3.3434 -0.3381 11 6 9.4347 3.5395 -0.4582 12 8 10.0984 2.7708 -1.1260 13 8 10.0298 4.5717 0.1717 14 6 11.3645 4.6937 0.0210 15 1 11.9071 3.9813 -0.5828 16 6 12.0410 5.7339 0.6427 17 7 11.3808 6.6005 1.3779 18 14 13.8894 5.9032 0.4334 19 1 14.2109 6.0758 -1.0061 20 1 14.3672 7.0869 1.1922 21 1 14.5597 4.6817 0.9472 22 6 7.2134 4.2274 0.4290 23 6 5.8540 4.0416 0.5380 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.2764 3.5587 0.0768 30 1 5.5192 1.2732 -1.3898 31 1 7.9474 1.5885 -1.5846 32 1 11.8536 7.3278 1.8121 33 1 7.6882 5.0552 0.9345 34 1 5.2622 4.7241 1.1299 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000010701405.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:58 Heat of formation + Delta-G solvation = -154.322241 kcal Electronic energy + Delta-G solvation = -20431.614121 eV Core-core repulsion = 16908.326197 eV Total energy + Delta-G solvation = -3523.287924 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.11797 -41.18122 -39.94125 -37.91349 -37.22043 -36.08445 -34.33358 -32.68328 -32.13026 -31.03094 -27.65976 -25.63374 -24.16466 -23.87615 -22.55422 -21.81632 -20.16498 -19.86844 -19.02576 -18.69204 -17.84345 -17.38606 -17.11041 -16.57988 -16.34321 -15.82425 -15.61976 -15.19136 -14.84444 -14.66928 -14.48183 -14.01585 -13.78870 -13.55680 -13.46036 -13.21138 -12.96223 -12.55675 -12.48160 -12.38383 -12.15969 -12.02455 -11.91150 -11.55134 -11.51413 -11.14774 -10.71133 -10.08687 -9.37849 -8.56925 -6.33438 -0.37886 0.32435 0.88295 1.33207 1.34714 1.48325 1.50462 1.84900 2.10343 2.71371 2.73077 2.97962 3.03649 3.76675 3.88721 4.03551 4.08320 4.20813 4.22713 4.32838 4.41159 4.56957 4.72077 4.94761 4.95364 5.03368 5.06605 5.12627 5.16319 5.28021 5.39948 5.47961 5.79106 5.80715 6.14243 6.59478 6.87605 7.06611 7.71119 8.63256 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.057929 B = 0.002939 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.230382 B = 9523.325529 C = 9891.897717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.071 3.929 3 O -0.361 6.361 4 C 0.649 3.351 5 O -0.583 6.583 6 N -0.631 5.631 7 C 0.186 3.814 8 C -0.132 4.132 9 C -0.049 4.049 10 C -0.135 4.135 11 C 0.433 3.567 12 O -0.585 6.585 13 O -0.229 6.229 14 C -0.421 4.421 15 H 0.081 0.919 16 C -0.001 4.001 17 N -0.895 5.895 18 Si 1.019 2.981 19 H -0.262 1.262 20 H -0.257 1.257 21 H -0.263 1.263 22 C -0.050 4.050 23 C -0.130 4.130 24 H 0.070 0.930 25 H 0.103 0.897 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.437 0.563 30 H 0.144 0.856 31 H 0.130 0.870 32 H 0.281 0.719 33 H 0.136 0.864 34 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.894 -6.142 -0.682 23.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.003 4.003 3 O -0.275 6.275 4 C 0.403 3.597 5 O -0.472 6.472 6 N -0.284 5.284 7 C 0.092 3.908 8 C -0.152 4.152 9 C -0.068 4.068 10 C -0.137 4.137 11 C 0.283 3.717 12 O -0.485 6.485 13 O -0.136 6.136 14 C -0.497 4.497 15 H 0.099 0.901 16 C -0.202 4.202 17 N -0.531 5.531 18 Si 0.837 3.163 19 H -0.186 1.186 20 H -0.180 1.180 21 H -0.187 1.187 22 C -0.069 4.069 23 C -0.150 4.150 24 H 0.089 0.911 25 H 0.121 0.879 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.278 0.722 30 H 0.162 0.838 31 H 0.148 0.852 32 H 0.091 0.909 33 H 0.154 0.846 34 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -22.517 -6.668 -0.712 23.494 hybrid contribution 0.949 0.140 -0.142 0.970 sum -21.568 -6.528 -0.853 22.550 Atomic orbital electron populations 1.21859 0.89886 1.04628 1.03912 1.23351 0.96753 0.77160 1.03018 1.86268 1.19812 1.35202 1.86206 1.18170 0.81982 0.83853 0.75661 1.91047 1.60469 1.40600 1.55118 1.41683 1.05495 1.07032 1.74223 1.17605 0.81845 0.96200 0.95193 1.21017 0.92666 1.01307 1.00246 1.21037 0.94463 0.94921 0.96385 1.19294 0.88896 1.00301 1.05190 1.21713 0.89940 0.80502 0.79562 1.90579 1.67164 1.47367 1.43405 1.83915 1.24361 1.43622 1.61746 1.21454 0.79823 1.14497 1.33909 0.90103 1.26550 1.06017 0.93442 0.94221 1.70042 1.39072 1.14451 1.29550 0.84674 0.73246 0.78956 0.79409 1.18615 1.18044 1.18727 1.21362 0.93791 0.97140 0.94586 1.21018 0.93482 0.99629 1.00909 0.91058 0.87861 0.91065 0.91023 0.91145 0.72181 0.83841 0.85200 0.90931 0.84576 0.80571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 10.29 71.99 0.74 -0.31 16 2 C 0.07 0.98 6.19 71.99 0.45 1.42 16 3 O -0.36 -6.40 10.27 -55.45 -0.57 -6.97 16 4 C 0.65 14.74 8.47 129.79 1.10 15.84 16 5 O -0.58 -17.43 13.82 19.83 0.27 -17.15 16 6 N -0.63 -12.07 5.32 -429.45 -2.29 -14.36 16 7 C 0.19 4.78 6.27 38.38 0.24 5.02 16 8 C -0.13 -4.07 8.62 22.35 0.19 -3.87 16 9 C -0.05 -1.82 9.58 22.52 0.22 -1.61 16 10 C -0.13 -5.76 5.88 -20.09 -0.12 -5.88 16 11 C 0.43 23.72 7.83 70.23 0.55 24.27 16 12 O -0.59 -34.68 15.59 19.69 0.31 -34.38 16 13 O -0.23 -13.88 8.98 10.80 0.10 -13.79 16 14 C -0.42 -26.16 9.65 67.95 0.66 -25.51 16 15 H 0.08 5.11 6.86 -2.91 -0.02 5.09 16 16 C 0.00 -0.07 5.49 84.89 0.47 0.40 16 17 N -0.89 -52.39 13.67 21.63 0.30 -52.09 16 18 Si 1.02 43.66 29.55 68.60 2.03 45.69 16 19 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 20 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 21 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 22 C -0.05 -1.76 9.61 22.52 0.22 -1.55 16 23 C -0.13 -3.31 9.94 22.35 0.22 -3.09 16 24 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 25 H 0.10 0.37 8.14 -2.38 -0.02 0.35 16 26 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.44 4.95 8.92 -92.71 -0.83 4.12 16 30 H 0.14 4.26 6.42 -2.91 -0.02 4.24 16 31 H 0.13 4.93 7.64 -2.91 -0.02 4.91 16 32 H 0.28 14.87 8.31 -92.71 -0.77 14.10 16 33 H 0.14 5.18 7.60 -2.91 -0.02 5.15 16 34 H 0.18 2.92 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -79.16 310.86 5.39 -73.77 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 0.32 Total: 14.15 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: 4.93 Total: 5.13 kcal Atomic # 7 Polarization: -64.46 SS G_CDS: -1.99 Total: -66.45 kcal Atomic # 8 Polarization: -72.40 SS G_CDS: 0.11 Total: -72.29 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -79.16 5.39 -73.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010701405.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.554 kcal (2) G-P(sol) polarization free energy of solvation -79.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds