Wall clock time and date at job start Tue Mar 31 2020 00:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36001 * 117.00304 * 2 1 4 4 C 1.38030 * 119.98686 * 359.72549 * 3 2 1 5 5 C 1.40035 * 119.82417 * 179.74933 * 4 3 2 6 6 C 1.46855 * 120.09902 * 180.25315 * 5 4 3 7 7 O 1.21296 * 120.00366 * 0.27031 * 6 5 4 8 8 C 1.40017 * 119.80174 * 0.52734 * 5 4 3 9 9 C 1.37677 * 119.97825 * 359.72439 * 8 5 4 10 10 C 1.38923 * 120.17518 * 0.02562 * 9 8 5 11 11 O 1.35746 * 119.89755 * 179.97438 * 10 9 8 12 12 C 1.42888 * 117.00379 * 0.02562 * 11 10 9 13 13 C 1.50703 * 109.47492 * 179.97438 * 12 11 10 14 14 O 1.21301 * 119.99577 * 0.02562 * 13 12 11 15 15 N 1.34775 * 120.00306 * 180.02562 * 13 12 11 16 16 C 1.37095 * 119.99787 * 180.02562 * 15 13 12 17 17 H 1.08006 * 120.00288 * 359.97438 * 16 15 13 18 18 C 1.38950 * 119.99896 * 180.02562 * 16 15 13 19 19 N 1.31406 * 120.00148 * 359.97438 * 18 16 15 20 20 Si 1.86810 * 120.00102 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46877 * 89.99538 * 20 18 16 22 22 H 1.48497 * 109.46707 * 209.99742 * 20 18 16 23 23 H 1.48500 * 109.46633 * 329.99683 * 20 18 16 24 24 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46938 * 59.99841 * 1 2 3 26 26 H 1.09004 * 109.46926 * 299.99962 * 1 2 3 27 27 H 1.08001 * 120.08537 * 0.02562 * 4 3 2 28 28 H 1.08005 * 120.00133 * 180.27162 * 6 5 4 29 29 H 1.07996 * 120.01259 * 179.70648 * 8 5 4 30 30 H 1.07996 * 119.90902 * 180.02562 * 9 8 5 31 31 H 1.09000 * 109.47621 * 300.00311 * 12 11 10 32 32 H 1.09004 * 109.47105 * 60.00315 * 12 11 10 33 33 H 0.96998 * 119.99703 * 359.97438 * 15 13 12 34 34 H 0.97001 * 120.00373 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2946 2.3692 -0.0057 5 6 1.9339 3.6151 -0.0004 6 6 1.1397 4.8504 -0.0008 7 8 -0.0718 4.7926 -0.0009 8 6 3.3326 3.6795 -0.0005 9 6 4.0747 2.5199 0.0000 10 6 3.4395 1.2844 -0.0001 11 8 4.1767 0.1445 -0.0001 12 6 5.5980 0.2912 0.0004 13 6 6.2436 -1.0706 0.0008 14 8 5.5541 -2.0686 0.0002 15 7 7.5869 -1.1796 0.0018 16 6 8.1741 -2.4184 0.0017 17 1 7.5602 -3.3071 0.0012 18 6 9.5590 -2.5308 0.0033 19 7 10.3060 -1.4497 0.0044 20 14 10.3592 -4.2189 0.0024 21 1 10.5728 -4.6646 -1.3979 22 1 11.6660 -4.1475 0.7041 23 1 9.4746 -5.1862 0.7004 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 0.2160 2.3141 -0.0098 28 1 1.6345 5.8105 -0.0011 29 1 3.8292 4.6386 -0.0011 30 1 5.1534 2.5709 0.0003 31 1 5.9071 0.8399 -0.8893 32 1 5.9064 0.8393 0.8907 33 1 8.1382 -0.3815 0.0019 34 1 11.2728 -1.5281 0.0059 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019471908.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:46 Heat of formation + Delta-G solvation = -112.504728 kcal Electronic energy + Delta-G solvation = -20606.380688 eV Core-core repulsion = 17084.906108 eV Total energy + Delta-G solvation = -3521.474580 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.75019 -39.19739 -38.74845 -37.72357 -36.50829 -34.02994 -31.41949 -30.74813 -30.56576 -28.23356 -27.50965 -24.90286 -24.13291 -22.45242 -21.21113 -19.49771 -18.67206 -18.07885 -17.56366 -16.73024 -16.21463 -15.84233 -15.69545 -15.44052 -15.19327 -14.89667 -14.66727 -14.38310 -14.07178 -13.74626 -13.42666 -13.01796 -12.78240 -12.33448 -12.24397 -11.64040 -11.55862 -11.30580 -11.21376 -11.15318 -10.84723 -10.44978 -10.31296 -10.01990 -9.61939 -8.95639 -8.52415 -8.09677 -7.92231 -6.51905 -3.93465 0.50118 1.17449 2.28712 3.04054 3.12426 3.19198 3.22947 3.30568 3.59950 3.72010 4.03242 4.13242 4.55069 4.72869 4.86398 4.92812 4.97473 5.09360 5.11471 5.11833 5.22083 5.34025 5.43999 5.48061 5.58462 5.87636 5.98108 6.04105 6.08584 6.41430 7.02904 7.21882 7.46663 7.52611 7.92870 8.47470 9.06317 9.37611 9.88325 10.65474 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.034334 B = 0.003298 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.317798 B = 8487.736266 C = 9282.606045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.298 6.298 3 C 0.082 3.918 4 C -0.116 4.116 5 C -0.210 4.210 6 C 0.388 3.612 7 O -0.472 6.472 8 C -0.055 4.055 9 C -0.199 4.199 10 C 0.151 3.849 11 O -0.265 6.265 12 C 0.046 3.954 13 C 0.440 3.560 14 O -0.570 6.570 15 N -0.554 5.554 16 C -0.301 4.301 17 H 0.106 0.894 18 C 0.025 3.975 19 N -0.899 5.899 20 Si 0.933 3.067 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.268 1.268 24 H 0.102 0.898 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.143 0.857 28 H 0.104 0.896 29 H 0.137 0.863 30 H 0.145 0.855 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.394 0.606 34 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.217 13.038 -0.003 17.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.211 6.211 3 C 0.036 3.964 4 C -0.135 4.135 5 C -0.211 4.211 6 C 0.248 3.752 7 O -0.346 6.346 8 C -0.073 4.073 9 C -0.218 4.218 10 C 0.103 3.897 11 O -0.176 6.176 12 C -0.032 4.032 13 C 0.224 3.776 14 O -0.453 6.453 15 N -0.192 5.192 16 C -0.430 4.430 17 H 0.124 0.876 18 C -0.177 4.177 19 N -0.540 5.540 20 Si 0.760 3.240 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.193 1.193 24 H 0.120 0.880 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.161 0.839 28 H 0.120 0.880 29 H 0.155 0.845 30 H 0.163 0.837 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.227 0.773 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.095 11.925 0.002 17.711 hybrid contribution 0.983 0.032 -0.011 0.984 sum -12.112 11.957 -0.009 17.020 Atomic orbital electron populations 1.23093 0.78650 1.04174 1.01054 1.86304 1.20845 1.25097 1.88895 1.18153 0.89149 0.85538 1.03529 1.21244 1.00403 0.90500 1.01311 1.20521 0.94588 0.95166 1.10821 1.23898 0.88680 0.92720 0.69851 1.90514 1.17612 1.90711 1.35783 1.21066 0.92162 0.98349 0.95757 1.21150 1.01171 0.90808 1.08661 1.18837 0.88697 0.86706 0.95490 1.86293 1.18252 1.26736 1.86286 1.22639 0.78641 0.99548 1.02418 1.19265 0.83455 0.88890 0.85982 1.90594 1.62277 1.37794 1.54667 1.41681 1.03667 1.09640 1.64169 1.19730 0.89986 0.85291 1.48042 0.87646 1.25288 0.96130 0.99370 0.96913 1.69600 1.06121 1.28317 1.49933 0.85808 0.78318 0.81397 0.78517 1.20257 1.20808 1.19263 0.87984 0.92781 0.92771 0.83930 0.87953 0.84531 0.83700 0.90066 0.90074 0.77260 0.91661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.30 -4.70 10.28 -34.41 -0.35 -5.05 16 3 C 0.08 1.22 6.69 -39.19 -0.26 0.96 16 4 C -0.12 -1.43 8.58 -38.98 -0.33 -1.76 16 5 C -0.21 -2.20 5.87 -105.07 -0.62 -2.82 16 6 C 0.39 3.50 11.44 34.22 0.39 3.89 16 7 O -0.47 -5.98 17.16 5.54 0.10 -5.89 16 8 C -0.05 -0.51 9.78 -39.12 -0.38 -0.89 16 9 C -0.20 -2.33 9.01 -39.53 -0.36 -2.69 16 10 C 0.15 2.34 6.71 -38.86 -0.26 2.08 16 11 O -0.27 -5.10 9.43 -46.63 -0.44 -5.54 16 12 C 0.05 0.81 5.21 36.01 0.19 1.00 16 13 C 0.44 10.47 7.86 -10.98 -0.09 10.38 16 14 O -0.57 -16.19 16.08 -14.37 -0.23 -16.42 16 15 N -0.55 -13.67 5.29 -10.96 -0.06 -13.73 16 16 C -0.30 -8.24 9.68 -14.93 -0.14 -8.39 16 17 H 0.11 3.04 7.16 -52.48 -0.38 2.67 16 18 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 19 N -0.90 -23.63 13.05 55.50 0.72 -22.90 16 20 Si 0.93 20.56 29.55 -169.99 -5.02 15.54 16 21 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 24 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.05 0.49 7.65 -51.93 -0.40 0.09 16 26 H 0.05 0.49 7.67 -51.93 -0.40 0.09 16 27 H 0.14 1.62 5.87 -52.49 -0.31 1.31 16 28 H 0.10 0.49 8.06 -52.48 -0.42 0.06 16 29 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 30 H 0.15 1.42 6.27 -52.49 -0.33 1.09 16 31 H 0.08 1.19 7.65 -51.93 -0.40 0.79 16 32 H 0.08 1.19 7.65 -51.93 -0.40 0.79 16 33 H 0.39 9.01 7.90 -40.82 -0.32 8.69 16 34 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 308.67 15.07 4.65 4.65 Total: -1.00 -34.83 308.67 -4.93 -39.76 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -3.33 Total: 6.00 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -0.97 Total: 3.59 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.67 Total: -36.63 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: -0.93 Total: -32.90 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -34.83 -4.93 -39.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019471908.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.747 kcal (2) G-P(sol) polarization free energy of solvation -34.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds