Wall clock time and date at job start Tue Mar 31 2020 01:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86802 * 120.00142 * 2 1 4 4 H 1.48495 * 109.47008 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46934 * 300.00223 * 3 2 1 6 6 H 1.48499 * 109.47042 * 60.00082 * 3 2 1 7 7 C 1.38952 * 119.99746 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99570 * 198.21625 * 7 2 1 9 9 N 1.37099 * 120.00115 * 18.20959 * 7 2 1 10 10 C 1.34772 * 119.99868 * 44.29375 * 9 7 2 11 11 O 1.21300 * 119.99965 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00227 * 179.97438 * 10 9 7 13 13 N 1.46496 * 109.47395 * 179.97438 * 12 10 9 14 14 C 1.36835 * 119.69013 * 269.72913 * 13 12 10 15 15 C 1.35029 * 119.68800 * 179.72753 * 14 13 12 16 16 C 1.41570 * 119.10939 * 0.53470 * 15 14 13 17 17 O 1.21783 * 120.30536 * 179.70929 * 16 15 14 18 18 N 1.34835 * 119.38692 * 359.73084 * 16 15 14 19 19 H 0.97008 * 119.86881 * 180.02562 * 18 16 15 20 20 C 1.34539 * 119.69364 * 89.99645 * 13 12 10 21 21 O 1.21583 * 119.53123 * 359.97438 * 20 13 12 22 22 C 1.46497 * 120.00247 * 224.28239 * 9 7 2 23 23 C 1.53002 * 117.49676 * 3.23632 * 22 9 7 24 24 C 1.52999 * 117.50533 * 294.61109 * 22 9 7 25 25 H 0.96994 * 119.99554 * 354.92689 * 1 2 3 26 26 H 1.09005 * 109.46933 * 299.99190 * 12 10 9 27 27 H 1.09002 * 109.47449 * 59.99579 * 12 10 9 28 28 H 1.08001 * 120.15537 * 359.97438 * 14 13 12 29 29 H 1.07993 * 120.44365 * 180.24706 * 15 14 13 30 30 H 1.09000 * 115.55059 * 148.93523 * 22 9 7 31 31 H 1.09001 * 117.50305 * 359.97438 * 23 22 9 32 32 H 1.09004 * 117.49843 * 145.02041 * 23 22 9 33 33 H 1.08991 * 117.49915 * 214.97661 * 24 22 9 34 34 H 1.09002 * 117.49243 * 359.97406 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0483 -1.2269 0.2918 9 7 1.3748 -2.3608 -0.3721 10 6 0.5784 -2.3737 -1.4592 11 8 0.4222 -1.3612 -2.1087 12 6 -0.1181 -3.6460 -1.8680 13 7 -0.9181 -3.4002 -3.0704 14 6 -2.2210 -3.0003 -2.9475 15 6 -2.9567 -2.7684 -4.0557 16 6 -2.3641 -2.9561 -5.3276 17 8 -3.0092 -2.7584 -6.3414 18 7 -1.0789 -3.3562 -5.4061 19 1 -0.6656 -3.4866 -6.2740 20 6 -0.3667 -3.5748 -4.2851 21 8 0.7914 -3.9349 -4.3713 22 6 1.5632 -3.5835 0.4125 23 6 2.4182 -3.4865 1.6776 24 6 2.9642 -4.1980 0.4379 25 1 -0.4849 0.8367 0.0743 26 1 0.6248 -4.4159 -2.0768 27 1 -0.7697 -3.9792 -1.0603 28 1 -2.6575 -2.8670 -1.9686 29 1 -3.9849 -2.4486 -3.9728 30 1 0.7138 -4.2664 0.4299 31 1 2.8409 -2.5129 1.9259 32 1 2.1314 -4.1056 2.5276 33 1 3.0364 -5.2849 0.4724 34 1 3.7457 -3.6925 -0.1295 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067686689.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:20:16 Heat of formation + Delta-G solvation = -22.371534 kcal Electronic energy + Delta-G solvation = -22198.422481 eV Core-core repulsion = 18713.149121 eV Total energy + Delta-G solvation = -3485.273361 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.98549 -39.09689 -38.38482 -36.87848 -36.03409 -34.50078 -32.93792 -31.56355 -30.97654 -27.89405 -24.87565 -24.71736 -22.99015 -21.82816 -21.38834 -19.90603 -18.94809 -18.29928 -17.24498 -16.89575 -16.25259 -16.04501 -15.72430 -14.92789 -14.77143 -14.49577 -14.03772 -13.83261 -13.72256 -13.51466 -13.10866 -12.89640 -12.14288 -11.80551 -11.57999 -11.14803 -11.01894 -10.96527 -10.73694 -10.69258 -10.25784 -10.13306 -10.11354 -10.10739 -9.89415 -8.91935 -8.59321 -8.06182 -7.20954 -6.27314 -4.01755 1.21391 2.13626 2.30845 3.21605 3.32470 3.34612 3.34736 3.70025 3.84494 4.14023 4.57460 4.60358 4.69032 4.92740 5.09524 5.22454 5.41067 5.43883 5.49058 5.60347 5.63323 5.68773 5.90443 6.14012 6.16339 6.24061 6.34054 6.57448 6.62255 6.82070 7.36213 7.49574 7.66668 8.09550 8.16816 8.86807 8.94334 9.47294 10.03655 10.82097 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.018535 B = 0.006336 C = 0.005306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.313774 B = 4418.220981 C = 5275.819371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.075 3.925 3 Si 0.913 3.087 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.284 1.284 7 C -0.346 4.346 8 H 0.080 0.920 9 N -0.420 5.420 10 C 0.466 3.534 11 O -0.521 6.521 12 C 0.091 3.909 13 N -0.507 5.507 14 C 0.208 3.792 15 C -0.319 4.319 16 C 0.555 3.445 17 O -0.535 6.535 18 N -0.659 5.659 19 H 0.426 0.574 20 C 0.701 3.299 21 O -0.538 6.538 22 C 0.066 3.934 23 C -0.170 4.170 24 C -0.205 4.205 25 H 0.265 0.735 26 H 0.116 0.884 27 H 0.109 0.891 28 H 0.176 0.824 29 H 0.168 0.832 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.221 -9.497 0.841 10.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.136 4.136 3 Si 0.740 3.260 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.211 1.211 7 C -0.472 4.472 8 H 0.098 0.902 9 N -0.141 5.141 10 C 0.252 3.748 11 O -0.398 6.398 12 C -0.034 4.034 13 N -0.225 5.225 14 C 0.082 3.918 15 C -0.346 4.346 16 C 0.352 3.648 17 O -0.413 6.413 18 N -0.327 5.327 19 H 0.267 0.733 20 C 0.403 3.597 21 O -0.411 6.411 22 C -0.040 4.040 23 C -0.207 4.207 24 C -0.244 4.244 25 H 0.075 0.925 26 H 0.134 0.866 27 H 0.127 0.873 28 H 0.194 0.806 29 H 0.185 0.815 30 H 0.121 0.879 31 H 0.126 0.874 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.130 -8.934 0.012 9.467 hybrid contribution 0.479 0.842 -0.100 0.974 sum -2.651 -8.092 -0.088 8.515 Atomic orbital electron populations 1.69786 1.06568 1.27536 1.42856 1.25226 0.94909 0.99462 0.94021 0.86129 0.79898 0.82371 0.77566 1.19498 1.20627 1.21053 1.18908 0.94662 0.83603 1.50076 0.90203 1.42674 1.43636 1.07082 1.20695 1.19777 0.84335 0.88540 0.82191 1.90596 1.62466 1.33792 1.52933 1.21968 0.96502 1.00662 0.84291 1.44344 1.11178 1.60224 1.06710 1.22378 0.82140 0.85750 1.01521 1.21714 1.03984 1.19172 0.89765 1.17340 0.80210 0.75994 0.91279 1.90875 1.61348 1.50968 1.38080 1.44589 1.14220 1.63749 1.10143 0.73299 1.15776 0.84699 0.78809 0.80380 1.91040 1.14427 1.50588 1.85023 1.21769 0.92910 0.91391 0.97956 1.23071 1.04053 1.02617 0.90983 1.23331 0.99395 0.98714 1.02920 0.92526 0.86626 0.87339 0.80643 0.81491 0.87942 0.87387 0.89622 0.89561 0.88933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.93 11.74 55.50 0.65 -22.28 16 2 C 0.07 1.99 4.39 -17.47 -0.08 1.91 16 3 Si 0.91 21.27 29.59 -169.99 -5.03 16.24 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.35 -8.89 7.92 -14.93 -0.12 -9.00 16 8 H 0.08 2.02 7.26 -52.49 -0.38 1.63 16 9 N -0.42 -9.59 2.83 -107.73 -0.31 -9.90 16 10 C 0.47 10.70 7.03 -10.99 -0.08 10.62 16 11 O -0.52 -14.36 14.19 5.54 0.08 -14.28 16 12 C 0.09 1.51 4.44 -5.20 -0.02 1.48 16 13 N -0.51 -8.26 2.10 -122.83 -0.26 -8.51 16 14 C 0.21 2.82 10.38 -16.46 -0.17 2.65 16 15 C -0.32 -4.39 10.00 -39.45 -0.39 -4.79 16 16 C 0.56 8.98 7.73 -14.96 -0.12 8.86 16 17 O -0.54 -9.94 17.94 5.11 0.09 -9.85 16 18 N -0.66 -10.32 5.23 -18.50 -0.10 -10.42 16 19 H 0.43 5.85 8.89 -40.82 -0.36 5.48 16 20 C 0.70 12.40 8.37 -87.29 -0.73 11.67 16 21 O -0.54 -10.90 16.66 5.29 0.09 -10.81 16 22 C 0.07 1.16 5.87 -67.93 -0.40 0.76 16 23 C -0.17 -2.73 9.80 -26.73 -0.26 -2.99 16 24 C -0.20 -3.18 10.36 -26.73 -0.28 -3.45 16 25 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 26 H 0.12 1.81 7.34 -51.93 -0.38 1.43 16 27 H 0.11 1.37 7.45 -51.93 -0.39 0.98 16 28 H 0.18 1.85 8.06 -52.49 -0.42 1.43 16 29 H 0.17 1.90 8.06 -52.49 -0.42 1.48 16 30 H 0.10 1.47 6.96 -51.93 -0.36 1.11 16 31 H 0.11 1.97 6.72 -51.93 -0.35 1.62 16 32 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 LS Contribution 301.37 15.07 4.54 4.54 Total: -1.00 -34.95 301.37 -6.35 -41.31 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -3.47 Total: 6.27 kcal Atomic # 6 Polarization: 20.35 SS G_CDS: -2.65 Total: 17.71 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: -0.01 Total: -51.11 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: 0.26 Total: -34.94 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -34.95 -6.35 -41.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067686689.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.935 kcal (2) G-P(sol) polarization free energy of solvation -34.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds