Wall clock time and date at job start Tue Mar 31 2020 01:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86802 * 120.00142 * 2 1 4 4 H 1.48495 * 109.47008 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46934 * 300.00223 * 3 2 1 6 6 H 1.48499 * 109.47042 * 60.00082 * 3 2 1 7 7 C 1.38952 * 119.99746 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99570 * 198.21625 * 7 2 1 9 9 N 1.37099 * 120.00115 * 18.20959 * 7 2 1 10 10 C 1.34772 * 119.99868 * 44.29375 * 9 7 2 11 11 O 1.21300 * 119.99965 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00227 * 179.97438 * 10 9 7 13 13 N 1.46496 * 109.47395 * 179.97438 * 12 10 9 14 14 C 1.36835 * 119.69013 * 269.72913 * 13 12 10 15 15 C 1.35029 * 119.68800 * 179.72753 * 14 13 12 16 16 C 1.41570 * 119.10939 * 0.53470 * 15 14 13 17 17 O 1.21783 * 120.30536 * 179.70929 * 16 15 14 18 18 N 1.34835 * 119.38692 * 359.73084 * 16 15 14 19 19 H 0.97008 * 119.86881 * 180.02562 * 18 16 15 20 20 C 1.34539 * 119.69364 * 89.99645 * 13 12 10 21 21 O 1.21583 * 119.53123 * 359.97438 * 20 13 12 22 22 C 1.46497 * 120.00247 * 224.28239 * 9 7 2 23 23 C 1.53002 * 117.49676 * 3.23632 * 22 9 7 24 24 C 1.52999 * 117.50533 * 294.61109 * 22 9 7 25 25 H 0.96994 * 119.99554 * 354.92689 * 1 2 3 26 26 H 1.09005 * 109.46933 * 299.99190 * 12 10 9 27 27 H 1.09002 * 109.47449 * 59.99579 * 12 10 9 28 28 H 1.08001 * 120.15537 * 359.97438 * 14 13 12 29 29 H 1.07993 * 120.44365 * 180.24706 * 15 14 13 30 30 H 1.09000 * 115.55059 * 148.93523 * 22 9 7 31 31 H 1.09001 * 117.50305 * 359.97438 * 23 22 9 32 32 H 1.09004 * 117.49843 * 145.02041 * 23 22 9 33 33 H 1.08991 * 117.49915 * 214.97661 * 24 22 9 34 34 H 1.09002 * 117.49243 * 359.97406 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0483 -1.2269 0.2918 9 7 1.3748 -2.3608 -0.3721 10 6 0.5784 -2.3737 -1.4592 11 8 0.4222 -1.3612 -2.1087 12 6 -0.1181 -3.6460 -1.8680 13 7 -0.9181 -3.4002 -3.0704 14 6 -2.2210 -3.0003 -2.9475 15 6 -2.9567 -2.7684 -4.0557 16 6 -2.3641 -2.9561 -5.3276 17 8 -3.0092 -2.7584 -6.3414 18 7 -1.0789 -3.3562 -5.4061 19 1 -0.6656 -3.4866 -6.2740 20 6 -0.3667 -3.5748 -4.2851 21 8 0.7914 -3.9349 -4.3713 22 6 1.5632 -3.5835 0.4125 23 6 2.4182 -3.4865 1.6776 24 6 2.9642 -4.1980 0.4379 25 1 -0.4849 0.8367 0.0743 26 1 0.6248 -4.4159 -2.0768 27 1 -0.7697 -3.9792 -1.0603 28 1 -2.6575 -2.8670 -1.9686 29 1 -3.9849 -2.4486 -3.9728 30 1 0.7138 -4.2664 0.4299 31 1 2.8409 -2.5129 1.9259 32 1 2.1314 -4.1056 2.5276 33 1 3.0364 -5.2849 0.4724 34 1 3.7457 -3.6925 -0.1295 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067686689.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:20:16 Heat of formation + Delta-G solvation = -47.544100 kcal Electronic energy + Delta-G solvation = -22199.514046 eV Core-core repulsion = 18713.149121 eV Total energy + Delta-G solvation = -3486.364925 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.27815 -40.60006 -39.84829 -38.23259 -37.53323 -35.86653 -34.73785 -33.04955 -32.48275 -29.36802 -26.61243 -25.94339 -24.34974 -23.12646 -22.80356 -21.50240 -20.22248 -19.63651 -18.77743 -18.18918 -17.87914 -17.49593 -17.09396 -16.59211 -16.21083 -15.91258 -15.58001 -15.45195 -15.07421 -14.75682 -14.58830 -14.18037 -13.76780 -13.27411 -13.11688 -12.85355 -12.68350 -12.56857 -12.19064 -12.12161 -12.08110 -11.64787 -11.48391 -11.46706 -11.18823 -10.74785 -10.17272 -9.49328 -8.98030 -8.23336 -5.98012 0.06621 0.80911 1.04054 1.33646 1.42536 1.47753 2.10287 2.19778 2.34554 2.46250 3.05804 3.13598 3.36319 3.56758 3.76395 3.96668 4.01743 4.22153 4.31146 4.33529 4.41836 4.47183 4.59523 4.96690 4.97940 5.06879 5.17047 5.32796 5.40292 5.49519 5.54401 6.09985 6.19316 6.36183 6.86402 7.01237 7.14227 7.67003 8.27866 8.84808 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.018535 B = 0.006336 C = 0.005306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.313774 B = 4418.220981 C = 5275.819371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.031 3.969 3 Si 0.958 3.042 4 H -0.265 1.265 5 H -0.300 1.300 6 H -0.270 1.270 7 C -0.353 4.353 8 H 0.072 0.928 9 N -0.437 5.437 10 C 0.453 3.547 11 O -0.580 6.580 12 C 0.104 3.896 13 N -0.509 5.509 14 C 0.210 3.790 15 C -0.317 4.317 16 C 0.549 3.451 17 O -0.565 6.565 18 N -0.653 5.653 19 H 0.431 0.569 20 C 0.697 3.303 21 O -0.571 6.571 22 C 0.043 3.957 23 C -0.168 4.168 24 C -0.188 4.188 25 H 0.260 0.740 26 H 0.127 0.873 27 H 0.159 0.841 28 H 0.213 0.787 29 H 0.194 0.806 30 H 0.145 0.855 31 H 0.077 0.923 32 H 0.121 0.879 33 H 0.126 0.874 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.966 -11.356 2.269 12.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.177 4.177 3 Si 0.784 3.216 4 H -0.189 1.189 5 H -0.227 1.227 6 H -0.195 1.195 7 C -0.481 4.481 8 H 0.090 0.910 9 N -0.157 5.157 10 C 0.240 3.760 11 O -0.461 6.461 12 C -0.021 4.021 13 N -0.226 5.226 14 C 0.086 3.914 15 C -0.343 4.343 16 C 0.347 3.653 17 O -0.445 6.445 18 N -0.320 5.320 19 H 0.273 0.727 20 C 0.399 3.601 21 O -0.447 6.447 22 C -0.062 4.062 23 C -0.205 4.205 24 C -0.227 4.227 25 H 0.069 0.931 26 H 0.145 0.855 27 H 0.176 0.824 28 H 0.230 0.770 29 H 0.211 0.789 30 H 0.162 0.838 31 H 0.096 0.904 32 H 0.139 0.861 33 H 0.144 0.856 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.868 -10.822 1.482 11.588 hybrid contribution 0.787 1.367 -0.561 1.674 sum -3.081 -9.456 0.921 9.987 Atomic orbital electron populations 1.69839 1.07294 1.27453 1.44781 1.25824 0.95603 1.01793 0.94451 0.85440 0.79299 0.79822 0.77040 1.18917 1.22736 1.19508 1.19004 0.94648 0.85243 1.49180 0.91008 1.42913 1.43254 1.07954 1.21602 1.20806 0.83840 0.89961 0.81364 1.90558 1.64421 1.36527 1.54598 1.21930 0.97526 0.97055 0.85579 1.44418 1.12078 1.60058 1.06080 1.22939 0.80843 0.84562 1.03099 1.21975 1.05129 1.18657 0.88534 1.17788 0.80000 0.75526 0.91944 1.90865 1.61858 1.52548 1.39192 1.44560 1.14210 1.63041 1.10176 0.72703 1.15969 0.84419 0.78600 0.81109 1.91011 1.15804 1.52303 1.85581 1.22204 0.95397 0.90177 0.98382 1.23108 1.03380 1.01989 0.92028 1.23334 0.97088 1.00622 1.01622 0.93069 0.85500 0.82382 0.77035 0.78935 0.83781 0.90413 0.86050 0.85575 0.91580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -47.59 11.74 21.66 0.25 -47.34 16 2 C 0.03 1.64 4.39 84.93 0.37 2.02 16 3 Si 0.96 44.39 29.59 68.60 2.03 46.42 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.30 -14.77 7.11 99.48 0.71 -14.07 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.35 -18.28 7.92 84.04 0.67 -17.62 16 8 H 0.07 3.71 7.26 -2.91 -0.02 3.69 16 9 N -0.44 -19.52 2.83 -613.13 -1.74 -21.26 16 10 C 0.45 20.28 7.03 87.66 0.62 20.90 16 11 O -0.58 -32.19 14.19 -3.09 -0.04 -32.23 16 12 C 0.10 3.12 4.44 85.63 0.38 3.50 16 13 N -0.51 -15.44 2.10 -660.91 -1.39 -16.82 16 14 C 0.21 5.06 10.38 83.17 0.86 5.92 16 15 C -0.32 -7.97 10.00 22.35 0.22 -7.75 16 16 C 0.55 17.21 7.73 85.05 0.66 17.86 16 17 O -0.56 -20.70 17.94 -4.61 -0.08 -20.79 16 18 N -0.65 -20.15 5.23 -448.95 -2.35 -22.49 16 19 H 0.43 11.91 8.89 -92.70 -0.82 11.08 16 20 C 0.70 24.01 8.37 179.18 1.50 25.51 16 21 O -0.57 -22.99 16.66 -3.98 -0.07 -23.05 16 22 C 0.04 1.38 5.87 44.99 0.26 1.65 16 23 C -0.17 -4.97 9.80 30.60 0.30 -4.67 16 24 C -0.19 -5.29 10.36 30.60 0.32 -4.98 16 25 H 0.26 14.01 8.32 -92.71 -0.77 13.24 16 26 H 0.13 3.58 7.34 -2.38 -0.02 3.56 16 27 H 0.16 3.15 7.45 -2.39 -0.02 3.14 16 28 H 0.21 3.52 8.06 -2.91 -0.02 3.50 16 29 H 0.19 3.79 8.06 -2.91 -0.02 3.76 16 30 H 0.14 3.38 6.96 -2.39 -0.02 3.37 16 31 H 0.08 2.80 6.72 -2.39 -0.02 2.78 16 32 H 0.12 2.71 8.14 -2.38 -0.02 2.69 16 33 H 0.13 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -78.97 301.37 3.11 -75.86 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.33 Total: 19.35 kcal Atomic # 6 Polarization: 36.19 SS G_CDS: 6.16 Total: 42.35 kcal Atomic # 7 Polarization: -102.70 SS G_CDS: -5.22 Total: -107.92 kcal Atomic # 8 Polarization: -75.88 SS G_CDS: -0.19 Total: -76.07 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -78.97 3.11 -75.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067686689.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.317 kcal (2) G-P(sol) polarization free energy of solvation -78.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds