Wall clock time and date at job start Tue Mar 31 2020 00:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34750 * 117.00140 * 2 1 4 4 O 1.21504 * 120.00007 * 359.97438 * 3 2 1 5 5 C 1.47480 * 119.99924 * 179.97438 * 3 2 1 6 6 C 1.39845 * 120.04351 * 359.97438 * 5 3 2 7 7 C 1.37649 * 120.04258 * 179.76235 * 6 5 3 8 8 C 1.39162 * 120.12478 * 0.51206 * 7 6 5 9 9 N 1.39152 * 119.95720 * 179.75908 * 8 7 6 10 10 C 1.34780 * 119.99577 * 34.80566 * 9 8 7 11 11 O 1.21747 * 120.00057 * 355.46977 * 10 9 8 12 12 C 1.46132 * 120.00236 * 175.47188 * 10 9 8 13 13 H 1.08001 * 119.99559 * 359.97438 * 12 10 9 14 14 C 1.40130 * 120.00336 * 179.72470 * 12 10 9 15 15 N 1.30633 * 120.00166 * 0.27404 * 14 12 10 16 16 Si 1.86804 * 120.00177 * 180.27758 * 14 12 10 17 17 H 1.48498 * 109.47404 * 89.99641 * 16 14 12 18 18 H 1.48492 * 109.47117 * 210.00262 * 16 14 12 19 19 H 1.48500 * 109.46830 * 329.99815 * 16 14 12 20 20 C 1.39745 * 120.09190 * 359.48592 * 8 7 6 21 21 O 1.35946 * 120.02723 * 180.23227 * 20 8 7 22 22 C 1.42898 * 117.00014 * 179.97438 * 21 20 8 23 23 C 1.38119 * 119.95173 * 0.25714 * 20 8 7 24 24 H 1.09000 * 109.47209 * 60.00175 * 1 2 3 25 25 H 1.08997 * 109.47445 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47153 * 300.00667 * 1 2 3 27 27 H 1.08002 * 119.98168 * 0.04043 * 6 5 3 28 28 H 1.07995 * 119.93813 * 180.25023 * 7 6 5 29 29 H 0.96992 * 120.00950 * 214.80377 * 9 8 7 30 30 H 0.96994 * 120.00217 * 179.97438 * 15 14 12 31 31 H 1.09007 * 109.47216 * 180.02562 * 22 21 20 32 32 H 1.08999 * 109.47251 * 299.99589 * 22 21 20 33 33 H 1.09004 * 109.47440 * 60.00566 * 22 21 20 34 34 H 1.07997 * 120.05761 * 179.97438 * 23 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4021 2.2196 -0.0005 5 6 3.5366 1.2777 0.0006 6 6 4.2991 0.1055 0.0017 7 6 5.6737 0.1775 -0.0028 8 6 6.3082 1.4160 0.0025 9 7 7.6980 1.4847 0.0030 10 6 8.4185 0.5634 -0.6669 11 8 7.8584 -0.3751 -1.2033 12 6 9.8719 0.6909 -0.7493 13 1 10.3687 1.5237 -0.2737 14 6 10.6215 -0.2700 -1.4409 15 7 10.0206 -1.2770 -2.0165 16 14 12.4802 -0.1111 -1.5396 17 1 13.0992 -0.8171 -0.3891 18 1 12.9618 -0.7145 -2.8080 19 1 12.8570 1.3247 -1.5001 20 6 5.5516 2.5909 0.0013 21 8 6.1729 3.8001 0.0017 22 6 5.3368 4.9590 -0.0001 23 6 4.1721 2.5227 0.0004 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5140 0.8900 27 1 3.8091 -0.8570 0.0014 28 1 6.2608 -0.7289 -0.0060 29 1 8.1484 2.1955 0.4854 30 1 10.5395 -1.9420 -2.4955 31 1 5.9577 5.8550 -0.0001 32 1 4.7089 4.9527 -0.8910 33 1 4.7063 4.9536 0.8890 34 1 3.5857 3.4296 0.0000 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083378086.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:59 Heat of formation + Delta-G solvation = -130.737388 kcal Electronic energy + Delta-G solvation = -21141.292929 eV Core-core repulsion = 17619.027722 eV Total energy + Delta-G solvation = -3522.265208 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.49729 -39.69166 -37.90695 -36.65259 -36.12302 -33.63758 -32.52963 -29.96534 -29.76729 -27.89424 -27.01172 -26.28690 -23.45976 -21.95150 -21.04894 -19.88821 -18.33791 -17.83052 -16.90439 -16.27658 -16.24688 -16.06871 -15.68188 -15.52900 -15.20628 -14.20623 -13.79164 -13.66718 -13.54240 -13.32961 -12.82802 -12.69097 -12.29085 -12.08223 -11.98872 -11.49083 -11.27753 -11.16563 -11.09730 -10.83812 -10.76761 -10.69127 -10.37649 -10.35917 -9.47011 -8.95928 -8.27732 -7.79598 -7.13111 -6.40719 -4.87732 1.04218 1.81040 2.80044 2.80875 3.05284 3.12372 3.15819 3.50821 3.94182 4.10017 4.38267 4.50085 4.93986 5.05514 5.12405 5.15097 5.22484 5.29029 5.42480 5.45462 5.51431 5.59349 5.64248 5.93211 6.23757 6.26773 6.51559 6.61415 6.76446 7.12426 7.24411 7.48685 7.63589 7.89866 7.95781 8.08942 8.79229 9.10877 10.29180 10.49392 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.025205 B = 0.004260 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.633363 B = 6570.500082 C = 7569.462116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.354 6.354 3 C 0.518 3.482 4 O -0.524 6.524 5 C -0.153 4.153 6 C -0.065 4.065 7 C -0.121 4.121 8 C 0.214 3.786 9 N -0.685 5.685 10 C 0.540 3.460 11 O -0.558 6.558 12 C -0.533 4.533 13 H 0.074 0.926 14 C 0.086 3.914 15 N -0.757 5.757 16 Si 0.914 3.086 17 H -0.270 1.270 18 H -0.277 1.277 19 H -0.263 1.263 20 C 0.055 3.945 21 O -0.312 6.312 22 C 0.029 3.971 23 C -0.121 4.121 24 H 0.061 0.939 25 H 0.100 0.900 26 H 0.060 0.940 27 H 0.134 0.866 28 H 0.160 0.840 29 H 0.400 0.600 30 H 0.273 0.727 31 H 0.097 0.903 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.913 5.557 4.806 13.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.271 6.271 3 C 0.365 3.635 4 O -0.414 6.414 5 C -0.156 4.156 6 C -0.084 4.084 7 C -0.142 4.142 8 C 0.112 3.888 9 N -0.326 5.326 10 C 0.348 3.652 11 O -0.440 6.440 12 C -0.569 4.569 13 H 0.092 0.908 14 C -0.135 4.135 15 N -0.385 5.385 16 Si 0.738 3.262 17 H -0.195 1.195 18 H -0.203 1.203 19 H -0.187 1.187 20 C 0.007 3.993 21 O -0.226 6.226 22 C -0.066 4.066 23 C -0.141 4.141 24 H 0.079 0.921 25 H 0.118 0.882 26 H 0.079 0.921 27 H 0.152 0.848 28 H 0.178 0.822 29 H 0.234 0.766 30 H 0.084 0.916 31 H 0.115 0.885 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.177 5.015 4.263 12.971 hybrid contribution 0.555 0.705 0.087 0.901 sum -10.623 5.721 4.350 12.825 Atomic orbital electron populations 1.23220 0.76634 1.03471 1.02327 1.86586 1.23014 1.32969 1.84528 1.21232 0.89242 0.81039 0.71991 1.90776 1.67073 1.36102 1.47478 1.18519 0.88139 0.94355 1.14550 1.21242 0.93497 0.97313 0.96329 1.21393 0.93726 0.97834 1.01275 1.17684 0.85482 0.90502 0.95146 1.44064 1.01988 1.33255 1.53340 1.18442 0.88081 0.80753 0.77924 1.90620 1.71697 1.32431 1.49272 1.20847 0.89362 1.10897 1.35796 0.90797 1.25751 1.00537 0.93959 0.93288 1.69970 1.36983 1.08363 1.23150 0.86250 0.82129 0.79476 0.78301 1.19512 1.20261 1.18710 1.18655 0.90328 0.85006 1.05278 1.86062 1.34968 1.11824 1.89779 1.22991 0.95882 0.86599 1.01123 1.20864 0.92447 0.97596 1.03213 0.92058 0.88186 0.92096 0.84775 0.82216 0.76572 0.91609 0.88488 0.92904 0.92977 0.84631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.57 101.05 1.07 1.44 16 2 O -0.35 -4.98 9.80 -40.63 -0.40 -5.38 16 3 C 0.52 8.39 7.89 34.50 0.27 8.66 16 4 O -0.52 -9.18 16.13 -19.27 -0.31 -9.49 16 5 C -0.15 -2.60 5.88 -104.95 -0.62 -3.22 16 6 C -0.06 -1.12 9.60 -39.20 -0.38 -1.50 16 7 C -0.12 -2.46 8.66 -39.45 -0.34 -2.80 16 8 C 0.21 4.43 6.32 -83.63 -0.53 3.91 16 9 N -0.68 -15.24 5.14 -11.09 -0.06 -15.30 16 10 C 0.54 14.55 7.57 -13.09 -0.10 14.45 16 11 O -0.56 -16.67 12.40 5.15 0.06 -16.61 16 12 C -0.53 -14.22 9.53 -35.71 -0.34 -14.56 16 13 H 0.07 1.80 7.85 -52.49 -0.41 1.38 16 14 C 0.09 2.27 5.50 -17.35 -0.10 2.17 16 15 N -0.76 -21.36 11.82 55.55 0.66 -20.70 16 16 Si 0.91 19.07 29.56 -169.99 -5.02 14.04 16 17 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 18 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 19 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 20 C 0.05 0.99 6.70 -39.06 -0.26 0.73 16 21 O -0.31 -5.16 10.04 -19.57 -0.20 -5.36 16 22 C 0.03 0.34 9.81 101.05 0.99 1.34 16 23 C -0.12 -2.04 8.57 -39.05 -0.33 -2.37 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.13 2.04 7.60 -52.49 -0.40 1.64 16 28 H 0.16 3.62 6.18 -52.49 -0.32 3.29 16 29 H 0.40 7.92 8.53 -40.82 -0.35 7.57 16 30 H 0.27 6.97 8.29 -40.82 -0.34 6.64 16 31 H 0.10 0.89 8.14 -51.92 -0.42 0.47 16 32 H 0.05 0.59 7.66 -51.93 -0.40 0.20 16 33 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 34 H 0.14 2.05 5.87 -52.49 -0.31 1.74 16 LS Contribution 305.01 15.07 4.60 4.60 Total: -1.00 -32.82 305.01 -4.74 -37.56 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -3.41 Total: 8.37 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: -0.66 Total: 8.26 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.60 Total: -36.00 kcal Atomic # 8 Polarization: -35.99 SS G_CDS: -0.84 Total: -36.83 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.04 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.82 -4.74 -37.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083378086.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.176 kcal (2) G-P(sol) polarization free energy of solvation -32.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds