Wall clock time and date at job start Tue Mar 31 2020 00:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34750 * 117.00140 * 2 1 4 4 O 1.21504 * 120.00007 * 359.97438 * 3 2 1 5 5 C 1.47480 * 119.99924 * 179.97438 * 3 2 1 6 6 C 1.39845 * 120.04351 * 359.97438 * 5 3 2 7 7 C 1.37649 * 120.04258 * 179.76235 * 6 5 3 8 8 C 1.39162 * 120.12478 * 0.51206 * 7 6 5 9 9 N 1.39152 * 119.95720 * 179.75908 * 8 7 6 10 10 C 1.34780 * 119.99577 * 34.80566 * 9 8 7 11 11 O 1.21747 * 120.00057 * 355.46977 * 10 9 8 12 12 C 1.46132 * 120.00236 * 175.47188 * 10 9 8 13 13 H 1.08001 * 119.99559 * 359.97438 * 12 10 9 14 14 C 1.40130 * 120.00336 * 179.72470 * 12 10 9 15 15 N 1.30633 * 120.00166 * 0.27404 * 14 12 10 16 16 Si 1.86804 * 120.00177 * 180.27758 * 14 12 10 17 17 H 1.48498 * 109.47404 * 89.99641 * 16 14 12 18 18 H 1.48492 * 109.47117 * 210.00262 * 16 14 12 19 19 H 1.48500 * 109.46830 * 329.99815 * 16 14 12 20 20 C 1.39745 * 120.09190 * 359.48592 * 8 7 6 21 21 O 1.35946 * 120.02723 * 180.23227 * 20 8 7 22 22 C 1.42898 * 117.00014 * 179.97438 * 21 20 8 23 23 C 1.38119 * 119.95173 * 0.25714 * 20 8 7 24 24 H 1.09000 * 109.47209 * 60.00175 * 1 2 3 25 25 H 1.08997 * 109.47445 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47153 * 300.00667 * 1 2 3 27 27 H 1.08002 * 119.98168 * 0.04043 * 6 5 3 28 28 H 1.07995 * 119.93813 * 180.25023 * 7 6 5 29 29 H 0.96992 * 120.00950 * 214.80377 * 9 8 7 30 30 H 0.96994 * 120.00217 * 179.97438 * 15 14 12 31 31 H 1.09007 * 109.47216 * 180.02562 * 22 21 20 32 32 H 1.08999 * 109.47251 * 299.99589 * 22 21 20 33 33 H 1.09004 * 109.47440 * 60.00566 * 22 21 20 34 34 H 1.07997 * 120.05761 * 179.97438 * 23 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4021 2.2196 -0.0005 5 6 3.5366 1.2777 0.0006 6 6 4.2991 0.1055 0.0017 7 6 5.6737 0.1775 -0.0028 8 6 6.3082 1.4160 0.0025 9 7 7.6980 1.4847 0.0030 10 6 8.4185 0.5634 -0.6669 11 8 7.8584 -0.3751 -1.2033 12 6 9.8719 0.6909 -0.7493 13 1 10.3687 1.5237 -0.2737 14 6 10.6215 -0.2700 -1.4409 15 7 10.0206 -1.2770 -2.0165 16 14 12.4802 -0.1111 -1.5396 17 1 13.0992 -0.8171 -0.3891 18 1 12.9618 -0.7145 -2.8080 19 1 12.8570 1.3247 -1.5001 20 6 5.5516 2.5909 0.0013 21 8 6.1729 3.8001 0.0017 22 6 5.3368 4.9590 -0.0001 23 6 4.1721 2.5227 0.0004 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5140 0.8900 27 1 3.8091 -0.8570 0.0014 28 1 6.2608 -0.7289 -0.0060 29 1 8.1484 2.1955 0.4854 30 1 10.5395 -1.9420 -2.4955 31 1 5.9577 5.8550 -0.0001 32 1 4.7089 4.9527 -0.8910 33 1 4.7063 4.9536 0.8890 34 1 3.5857 3.4296 0.0000 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083378086.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:58 Heat of formation + Delta-G solvation = -153.405632 kcal Electronic energy + Delta-G solvation = -21142.275898 eV Core-core repulsion = 17619.027722 eV Total energy + Delta-G solvation = -3523.248177 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.84220 -41.03732 -39.57977 -38.06014 -37.42732 -35.42907 -34.53643 -31.47940 -31.18109 -28.97763 -28.45367 -27.72326 -24.93108 -23.38587 -22.49382 -21.57294 -19.68926 -19.53076 -18.30190 -17.85226 -17.53665 -17.37713 -17.29384 -16.78916 -16.59737 -15.89485 -15.26680 -15.10416 -14.88815 -14.57370 -14.40648 -14.20999 -13.68054 -13.50165 -13.17140 -13.04344 -12.78709 -12.74950 -12.59276 -12.35972 -12.04931 -12.00819 -11.80406 -11.67659 -11.17484 -10.88401 -9.96767 -9.61275 -8.74568 -8.36952 -6.94615 -0.38364 0.36979 1.38157 1.42201 1.47628 1.58550 1.68047 2.20960 2.29934 2.35982 2.70736 2.85252 3.53185 3.72433 3.80150 4.07405 4.11154 4.32438 4.36053 4.37310 4.40861 4.45694 4.69794 4.73945 4.81914 4.94194 5.17157 5.22938 5.26480 5.31629 5.59272 5.75463 6.03692 6.12420 6.44774 6.66163 6.77799 7.25769 8.30742 8.55605 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.025205 B = 0.004260 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.633363 B = 6570.500082 C = 7569.462116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.358 6.358 3 C 0.523 3.477 4 O -0.535 6.535 5 C -0.146 4.146 6 C -0.059 4.059 7 C -0.134 4.134 8 C 0.177 3.823 9 N -0.680 5.680 10 C 0.529 3.471 11 O -0.600 6.600 12 C -0.562 4.562 13 H 0.092 0.908 14 C 0.032 3.968 15 N -0.809 5.809 16 Si 1.000 3.000 17 H -0.260 1.260 18 H -0.272 1.272 19 H -0.250 1.250 20 C 0.068 3.932 21 O -0.328 6.328 22 C 0.018 3.982 23 C -0.117 4.117 24 H 0.064 0.936 25 H 0.133 0.867 26 H 0.067 0.933 27 H 0.154 0.846 28 H 0.128 0.872 29 H 0.409 0.591 30 H 0.279 0.721 31 H 0.124 0.876 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.562 6.988 5.228 14.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.274 6.274 3 C 0.371 3.629 4 O -0.427 6.427 5 C -0.149 4.149 6 C -0.078 4.078 7 C -0.155 4.155 8 C 0.077 3.923 9 N -0.323 5.323 10 C 0.336 3.664 11 O -0.485 6.485 12 C -0.597 4.597 13 H 0.110 0.890 14 C -0.185 4.185 15 N -0.438 5.438 16 Si 0.820 3.180 17 H -0.184 1.184 18 H -0.197 1.197 19 H -0.173 1.173 20 C 0.020 3.980 21 O -0.242 6.242 22 C -0.076 4.076 23 C -0.137 4.137 24 H 0.082 0.918 25 H 0.151 0.849 26 H 0.085 0.915 27 H 0.172 0.828 28 H 0.146 0.854 29 H 0.245 0.755 30 H 0.089 0.911 31 H 0.142 0.858 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -11.881 6.486 4.718 14.334 hybrid contribution 0.501 0.325 -0.002 0.597 sum -11.380 6.811 4.716 14.076 Atomic orbital electron populations 1.23618 0.74082 1.05931 1.02799 1.86569 1.25456 1.31578 1.83816 1.20966 0.88690 0.81552 0.71736 1.90772 1.67210 1.36678 1.48080 1.18749 0.89157 0.94220 1.12745 1.21314 0.92183 0.98634 0.95682 1.21177 0.94838 0.96849 1.02660 1.17888 0.84853 0.91839 0.97768 1.43576 1.02798 1.32646 1.53306 1.18744 0.88840 0.80889 0.77890 1.90580 1.72630 1.34223 1.51107 1.21375 0.89820 1.11981 1.36555 0.89019 1.26962 1.06459 0.92969 0.92067 1.70118 1.39641 1.09639 1.24357 0.84966 0.74393 0.80104 0.78587 1.18432 1.19719 1.17325 1.18554 0.90481 0.85078 1.03900 1.86054 1.36492 1.12225 1.89406 1.23376 0.96526 0.85521 1.02154 1.21090 0.91944 0.98442 1.02223 0.91762 0.84852 0.91471 0.82809 0.85387 0.75508 0.91096 0.85757 0.92256 0.91413 0.82418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.57 113.37 1.20 1.69 16 2 O -0.36 -9.23 9.80 -56.61 -0.55 -9.78 16 3 C 0.52 15.86 7.89 70.26 0.55 16.42 16 4 O -0.54 -17.46 16.13 19.82 0.32 -17.14 16 5 C -0.15 -4.78 5.88 -20.08 -0.12 -4.90 16 6 C -0.06 -2.05 9.60 22.52 0.22 -1.84 16 7 C -0.13 -5.68 8.66 22.35 0.19 -5.49 16 8 C 0.18 7.53 6.32 38.57 0.24 7.77 16 9 N -0.68 -31.44 5.14 -307.20 -1.58 -33.02 16 10 C 0.53 29.76 7.57 86.29 0.65 30.42 16 11 O -0.60 -37.90 12.40 -4.50 -0.06 -37.95 16 12 C -0.56 -30.65 9.53 24.78 0.24 -30.41 16 13 H 0.09 4.48 7.85 -2.91 -0.02 4.45 16 14 C 0.03 1.72 5.50 85.33 0.47 2.19 16 15 N -0.81 -47.23 11.82 21.85 0.26 -46.97 16 16 Si 1.00 39.13 29.56 68.60 2.03 41.16 16 17 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 18 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 19 H -0.25 -9.15 7.11 99.48 0.71 -8.44 16 20 C 0.07 2.42 6.70 22.61 0.15 2.57 16 21 O -0.33 -10.41 10.04 -92.94 -0.93 -11.35 16 22 C 0.02 0.38 9.81 113.37 1.11 1.49 16 23 C -0.12 -3.75 8.57 22.62 0.19 -3.56 16 24 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 27 H 0.15 4.61 7.60 -2.91 -0.02 4.58 16 28 H 0.13 6.27 6.18 -2.91 -0.02 6.25 16 29 H 0.41 16.66 8.53 -92.71 -0.79 15.87 16 30 H 0.28 14.70 8.29 -92.71 -0.77 13.93 16 31 H 0.12 1.91 8.14 -2.38 -0.02 1.89 16 32 H 0.06 1.17 7.66 -2.39 -0.02 1.16 16 33 H 0.07 1.22 7.66 -2.38 -0.02 1.20 16 34 H 0.16 4.33 5.87 -2.91 -0.02 4.31 16 Total: -1.00 -73.52 305.01 4.95 -68.57 By element: Atomic # 1 Polarization: 29.78 SS G_CDS: 0.37 Total: 30.14 kcal Atomic # 6 Polarization: 11.24 SS G_CDS: 5.10 Total: 16.35 kcal Atomic # 7 Polarization: -78.67 SS G_CDS: -1.32 Total: -79.99 kcal Atomic # 8 Polarization: -75.00 SS G_CDS: -1.22 Total: -76.22 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 2.03 Total: 41.16 kcal Total: -73.52 4.95 -68.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083378086.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.839 kcal (2) G-P(sol) polarization free energy of solvation -73.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds