Wall clock time and date at job start Tue Mar 31 2020 00:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34754 * 116.99876 * 2 1 4 4 O 1.21515 * 120.00355 * 0.02562 * 3 2 1 5 5 C 1.47390 * 119.99860 * 180.02562 * 3 2 1 6 6 C 1.39648 * 120.18592 * 5.41341 * 5 3 2 7 7 C 1.38376 * 119.87188 * 179.97438 * 6 5 3 8 8 O 1.35926 * 119.87835 * 179.97438 * 7 6 5 9 9 C 1.42900 * 116.99886 * 179.97438 * 8 7 6 10 10 C 1.39087 * 120.24090 * 359.97438 * 7 6 5 11 11 C 1.37894 * 120.37733 * 359.76528 * 10 7 6 12 12 C 1.39043 * 120.12787 * 0.51044 * 11 10 7 13 13 N 1.38912 * 120.13013 * 179.74451 * 12 11 10 14 14 C 1.34775 * 119.99511 * 35.28898 * 13 12 11 15 15 O 1.21757 * 120.00414 * 355.57949 * 14 13 12 16 16 C 1.41818 * 120.00107 * 175.58028 * 14 13 12 17 17 H 1.08001 * 119.99269 * 5.04910 * 16 14 13 18 18 C 1.40137 * 120.00186 * 184.77574 * 16 14 13 19 19 N 1.30628 * 120.00245 * 355.22342 * 18 16 14 20 20 Si 1.86797 * 119.99915 * 175.22113 * 18 16 14 21 21 H 1.48503 * 109.47006 * 95.00023 * 20 18 16 22 22 H 1.48500 * 109.47417 * 214.99871 * 20 18 16 23 23 H 1.48499 * 109.47307 * 334.99795 * 20 18 16 24 24 H 1.09004 * 109.47421 * 300.00236 * 1 2 3 25 25 H 1.08998 * 109.47607 * 59.99550 * 1 2 3 26 26 H 1.08997 * 109.47635 * 180.02562 * 1 2 3 27 27 H 1.07995 * 120.06371 * 359.95408 * 6 5 3 28 28 H 1.09004 * 109.47163 * 180.02562 * 9 8 7 29 29 H 1.09002 * 109.47287 * 300.00368 * 9 8 7 30 30 H 1.09003 * 109.46819 * 60.00337 * 9 8 7 31 31 H 1.08000 * 119.81184 * 180.02562 * 10 7 6 32 32 H 1.08008 * 119.93783 * 180.28063 * 11 10 7 33 33 H 0.96998 * 120.00307 * 215.28961 * 13 12 11 34 34 H 0.96999 * 120.00345 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4019 2.2198 0.0005 5 6 3.5356 1.2778 -0.0006 6 6 4.2997 0.1145 -0.1150 7 6 5.6811 0.1945 -0.1153 8 8 6.4249 -0.9378 -0.2262 9 6 7.8456 -0.7839 -0.2204 10 6 6.3113 1.4293 -0.0027 11 6 5.5667 2.5849 0.1054 12 6 4.1777 2.5220 0.1132 13 7 3.4277 3.6856 0.2275 14 6 3.8592 4.8247 -0.3492 15 8 4.9440 4.8547 -0.9013 16 6 3.0497 5.9887 -0.3130 17 1 2.1254 5.9863 0.2457 18 6 3.4519 7.1435 -0.9975 19 7 4.6151 7.1793 -1.5908 20 14 2.3247 8.6316 -1.0614 21 1 2.6902 9.5764 0.0244 22 1 2.4710 9.3074 -2.3756 23 1 0.9167 8.1941 -0.8839 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 3.8133 -0.8458 -0.2027 28 1 8.3174 -1.7619 -0.3155 29 1 8.1461 -0.1529 -1.0568 30 1 8.1569 -0.3194 0.7153 31 1 7.3899 1.4837 -0.0041 32 1 6.0634 3.5404 0.1880 33 1 2.5934 3.6783 0.7223 34 1 4.8937 7.9787 -2.0643 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083378087.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:48 Heat of formation + Delta-G solvation = -123.523344 kcal Electronic energy + Delta-G solvation = -21508.895068 eV Core-core repulsion = 17986.942684 eV Total energy + Delta-G solvation = -3521.952383 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.46867 -39.42222 -38.30384 -36.38116 -35.96775 -33.25704 -32.36112 -31.15721 -29.09738 -27.65359 -27.08986 -25.99511 -23.57117 -22.37422 -20.65632 -19.88624 -18.11009 -17.58447 -17.01876 -16.26907 -16.06771 -15.86826 -15.75621 -15.48540 -15.22628 -14.15877 -13.76815 -13.53427 -13.23719 -13.06841 -12.84705 -12.66551 -12.17971 -12.10724 -12.03152 -11.88336 -11.33155 -11.15255 -10.85064 -10.73779 -10.63692 -10.59063 -10.33911 -10.07868 -9.11650 -8.76306 -8.68585 -7.73281 -6.93747 -6.39068 -4.88537 1.09177 1.93074 2.91975 2.93658 3.06000 3.13963 3.19199 3.53156 3.99156 4.12154 4.45631 4.64373 5.02235 5.11949 5.20201 5.25419 5.28429 5.31806 5.40220 5.52794 5.61210 5.64500 5.70329 5.94202 6.25238 6.35463 6.52423 6.77955 6.83815 6.99402 7.25139 7.63424 7.88625 8.02171 8.12026 8.16409 8.80643 9.27193 10.36270 10.55771 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.016054 B = 0.005744 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.730199 B = 4873.071453 C = 6503.669977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.359 6.359 3 C 0.514 3.486 4 O -0.500 6.500 5 C -0.166 4.166 6 C -0.075 4.075 7 C 0.059 3.941 8 O -0.323 6.323 9 C 0.030 3.970 10 C -0.144 4.144 11 C -0.106 4.106 12 C 0.235 3.765 13 N -0.681 5.681 14 C 0.542 3.458 15 O -0.570 6.570 16 C -0.530 4.530 17 H 0.072 0.928 18 C 0.088 3.912 19 N -0.747 5.747 20 Si 0.913 3.087 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.261 1.261 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.097 0.903 27 H 0.137 0.863 28 H 0.094 0.906 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.129 0.871 32 H 0.157 0.843 33 H 0.404 0.596 34 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.612 -13.142 3.809 13.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.276 6.276 3 C 0.360 3.640 4 O -0.389 6.389 5 C -0.172 4.172 6 C -0.094 4.094 7 C 0.014 3.986 8 O -0.237 6.237 9 C -0.066 4.066 10 C -0.164 4.164 11 C -0.127 4.127 12 C 0.131 3.869 13 N -0.326 5.326 14 C 0.352 3.648 15 O -0.454 6.454 16 C -0.565 4.565 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.375 5.375 20 Si 0.737 3.263 21 H -0.195 1.195 22 H -0.202 1.202 23 H -0.185 1.185 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.116 0.884 27 H 0.155 0.845 28 H 0.112 0.888 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.146 0.854 32 H 0.175 0.825 33 H 0.243 0.757 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.086 -12.766 3.271 13.179 hybrid contribution -0.942 0.894 0.091 1.302 sum -1.029 -11.873 3.362 12.382 Atomic orbital electron populations 1.23201 0.76671 1.03187 1.02590 1.86554 1.22999 1.33083 1.84940 1.21021 0.88786 0.81244 0.72943 1.90794 1.66539 1.35462 1.46103 1.18558 0.88516 0.93693 1.16398 1.20200 0.90329 0.97828 1.01088 1.18634 0.90831 0.85253 1.03848 1.85999 1.18380 1.29747 1.89578 1.22962 0.79206 1.03147 1.01270 1.21390 1.00251 0.91696 1.03019 1.21364 0.91956 0.99393 0.99990 1.17884 0.91239 0.85774 0.91989 1.44384 1.25607 1.07828 1.54742 1.17110 0.87165 0.81597 0.78927 1.90613 1.22892 1.83648 1.48293 1.20075 1.07919 0.95715 1.32757 0.90964 1.25767 0.94826 0.99591 0.93322 1.70007 1.17444 1.27525 1.22508 0.86254 0.81143 0.80618 0.78274 1.19540 1.20162 1.18526 0.92002 0.91945 0.88430 0.84474 0.88798 0.92849 0.92951 0.85365 0.82538 0.75726 0.91650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.57 101.05 1.07 1.50 16 2 O -0.36 -5.47 9.83 -40.64 -0.40 -5.87 16 3 C 0.51 9.52 7.87 34.46 0.27 9.80 16 4 O -0.50 -10.41 13.78 -19.28 -0.27 -10.67 16 5 C -0.17 -3.18 5.89 -104.80 -0.62 -3.80 16 6 C -0.08 -1.26 9.55 -39.00 -0.37 -1.63 16 7 C 0.06 0.97 6.68 -39.22 -0.26 0.71 16 8 O -0.32 -4.64 10.49 -19.51 -0.20 -4.85 16 9 C 0.03 0.30 9.81 101.05 0.99 1.29 16 10 C -0.14 -2.45 9.02 -39.39 -0.36 -2.80 16 11 C -0.11 -2.21 8.67 -39.41 -0.34 -2.55 16 12 C 0.24 5.14 6.30 -83.51 -0.53 4.62 16 13 N -0.68 -16.50 4.52 -12.22 -0.06 -16.55 16 14 C 0.54 15.40 7.40 -14.89 -0.11 15.29 16 15 O -0.57 -17.61 12.32 5.14 0.06 -17.54 16 16 C -0.53 -14.90 9.31 -37.50 -0.35 -15.25 16 17 H 0.07 1.90 7.85 -52.49 -0.41 1.49 16 18 C 0.09 2.39 5.49 -17.35 -0.10 2.30 16 19 N -0.75 -21.56 11.75 55.55 0.65 -20.91 16 20 Si 0.91 19.74 29.56 -169.99 -5.03 14.71 16 21 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 22 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 23 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.14 2.03 7.62 -52.49 -0.40 1.63 16 28 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.53 7.65 -51.93 -0.40 0.13 16 30 H 0.05 0.49 7.65 -51.93 -0.40 0.09 16 31 H 0.13 1.81 6.27 -52.49 -0.33 1.48 16 32 H 0.16 3.63 6.23 -52.48 -0.33 3.30 16 33 H 0.40 9.28 6.54 -40.82 -0.27 9.02 16 34 H 0.27 7.08 8.29 -40.82 -0.34 6.74 16 LS Contribution 300.78 15.07 4.53 4.53 Total: -1.00 -33.68 300.78 -4.75 -38.43 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -3.35 Total: 9.26 kcal Atomic # 6 Polarization: 10.16 SS G_CDS: -0.70 Total: 9.46 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.60 Total: -37.46 kcal Atomic # 8 Polarization: -38.13 SS G_CDS: -0.81 Total: -38.93 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.03 Total: 14.71 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.68 -4.75 -38.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083378087.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.091 kcal (2) G-P(sol) polarization free energy of solvation -33.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds