Wall clock time and date at job start Tue Mar 31 2020 00:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34754 * 116.99876 * 2 1 4 4 O 1.21515 * 120.00355 * 0.02562 * 3 2 1 5 5 C 1.47390 * 119.99860 * 180.02562 * 3 2 1 6 6 C 1.39648 * 120.18592 * 5.41341 * 5 3 2 7 7 C 1.38376 * 119.87188 * 179.97438 * 6 5 3 8 8 O 1.35926 * 119.87835 * 179.97438 * 7 6 5 9 9 C 1.42900 * 116.99886 * 179.97438 * 8 7 6 10 10 C 1.39087 * 120.24090 * 359.97438 * 7 6 5 11 11 C 1.37894 * 120.37733 * 359.76528 * 10 7 6 12 12 C 1.39043 * 120.12787 * 0.51044 * 11 10 7 13 13 N 1.38912 * 120.13013 * 179.74451 * 12 11 10 14 14 C 1.34775 * 119.99511 * 35.28898 * 13 12 11 15 15 O 1.21757 * 120.00414 * 355.57949 * 14 13 12 16 16 C 1.41818 * 120.00107 * 175.58028 * 14 13 12 17 17 H 1.08001 * 119.99269 * 5.04910 * 16 14 13 18 18 C 1.40137 * 120.00186 * 184.77574 * 16 14 13 19 19 N 1.30628 * 120.00245 * 355.22342 * 18 16 14 20 20 Si 1.86797 * 119.99915 * 175.22113 * 18 16 14 21 21 H 1.48503 * 109.47006 * 95.00023 * 20 18 16 22 22 H 1.48500 * 109.47417 * 214.99871 * 20 18 16 23 23 H 1.48499 * 109.47307 * 334.99795 * 20 18 16 24 24 H 1.09004 * 109.47421 * 300.00236 * 1 2 3 25 25 H 1.08998 * 109.47607 * 59.99550 * 1 2 3 26 26 H 1.08997 * 109.47635 * 180.02562 * 1 2 3 27 27 H 1.07995 * 120.06371 * 359.95408 * 6 5 3 28 28 H 1.09004 * 109.47163 * 180.02562 * 9 8 7 29 29 H 1.09002 * 109.47287 * 300.00368 * 9 8 7 30 30 H 1.09003 * 109.46819 * 60.00337 * 9 8 7 31 31 H 1.08000 * 119.81184 * 180.02562 * 10 7 6 32 32 H 1.08008 * 119.93783 * 180.28063 * 11 10 7 33 33 H 0.96998 * 120.00307 * 215.28961 * 13 12 11 34 34 H 0.96999 * 120.00345 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4019 2.2198 0.0005 5 6 3.5356 1.2778 -0.0006 6 6 4.2997 0.1145 -0.1150 7 6 5.6811 0.1945 -0.1153 8 8 6.4249 -0.9378 -0.2262 9 6 7.8456 -0.7839 -0.2204 10 6 6.3113 1.4293 -0.0027 11 6 5.5667 2.5849 0.1054 12 6 4.1777 2.5220 0.1132 13 7 3.4277 3.6856 0.2275 14 6 3.8592 4.8247 -0.3492 15 8 4.9440 4.8547 -0.9013 16 6 3.0497 5.9887 -0.3130 17 1 2.1254 5.9863 0.2457 18 6 3.4519 7.1435 -0.9975 19 7 4.6151 7.1793 -1.5908 20 14 2.3247 8.6316 -1.0614 21 1 2.6902 9.5764 0.0244 22 1 2.4710 9.3074 -2.3756 23 1 0.9167 8.1941 -0.8839 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 3.8133 -0.8458 -0.2027 28 1 8.3174 -1.7619 -0.3155 29 1 8.1461 -0.1529 -1.0568 30 1 8.1569 -0.3194 0.7153 31 1 7.3899 1.4837 -0.0041 32 1 6.0634 3.5404 0.1880 33 1 2.5934 3.6783 0.7223 34 1 4.8937 7.9787 -2.0643 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083378087.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:48 Heat of formation + Delta-G solvation = -147.189022 kcal Electronic energy + Delta-G solvation = -21509.921288 eV Core-core repulsion = 17986.942684 eV Total energy + Delta-G solvation = -3522.978604 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.93626 -40.75799 -39.97351 -37.99410 -37.36384 -35.13625 -34.38783 -32.61736 -30.60424 -29.04977 -28.30358 -27.52245 -24.94090 -24.00572 -22.16245 -21.63546 -19.50250 -19.38328 -18.40214 -17.93456 -17.69669 -17.34210 -17.13313 -16.74666 -16.53809 -15.90950 -15.27695 -15.01329 -14.72405 -14.61539 -14.36171 -14.24283 -13.71233 -13.48459 -13.26396 -13.12119 -12.92717 -12.82080 -12.73412 -12.17751 -12.04483 -12.01247 -11.79216 -11.56011 -11.02566 -10.50366 -10.20679 -9.83702 -8.57938 -8.42733 -7.04334 -0.38215 0.42498 1.36663 1.37538 1.46932 1.54616 1.65945 2.19292 2.30987 2.40102 2.73923 2.90454 3.56689 3.73937 3.80953 4.10523 4.16908 4.34976 4.36744 4.39520 4.48089 4.52926 4.71349 4.76780 4.82976 4.94562 5.18279 5.20314 5.29635 5.33026 5.46633 5.86290 6.09790 6.23242 6.46312 6.69220 6.70248 7.30194 8.31824 8.50957 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.016054 B = 0.005744 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.730199 B = 4873.071453 C = 6503.669977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.351 6.351 3 C 0.516 3.484 4 O -0.529 6.529 5 C -0.164 4.164 6 C -0.067 4.067 7 C 0.078 3.922 8 O -0.324 6.324 9 C 0.016 3.984 10 C -0.134 4.134 11 C -0.126 4.126 12 C 0.193 3.807 13 N -0.683 5.683 14 C 0.530 3.470 15 O -0.608 6.608 16 C -0.563 4.563 17 H 0.081 0.919 18 C 0.035 3.965 19 N -0.796 5.796 20 Si 1.000 3.000 21 H -0.256 1.256 22 H -0.266 1.266 23 H -0.254 1.254 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.141 0.859 27 H 0.165 0.835 28 H 0.126 0.874 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.158 0.842 32 H 0.123 0.877 33 H 0.406 0.594 34 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.166 -15.055 3.918 15.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.267 6.267 3 C 0.363 3.637 4 O -0.420 6.420 5 C -0.169 4.169 6 C -0.086 4.086 7 C 0.032 3.968 8 O -0.238 6.238 9 C -0.078 4.078 10 C -0.153 4.153 11 C -0.147 4.147 12 C 0.092 3.908 13 N -0.328 5.328 14 C 0.340 3.660 15 O -0.496 6.496 16 C -0.598 4.598 17 H 0.099 0.901 18 C -0.184 4.184 19 N -0.424 5.424 20 Si 0.819 3.181 21 H -0.180 1.180 22 H -0.191 1.191 23 H -0.178 1.178 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.159 0.841 27 H 0.183 0.817 28 H 0.144 0.856 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.176 0.824 32 H 0.141 0.859 33 H 0.245 0.755 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.630 -14.771 3.403 15.171 hybrid contribution -0.683 1.171 0.080 1.358 sum -1.314 -13.600 3.483 14.100 Atomic orbital electron populations 1.23611 0.74229 1.06010 1.02561 1.86534 1.25254 1.30856 1.84071 1.20966 0.88603 0.81797 0.72292 1.90777 1.67089 1.36717 1.47457 1.18672 0.89432 0.93310 1.15462 1.20481 0.90657 0.97940 0.99552 1.18679 0.91062 0.85614 1.01411 1.86027 1.20547 1.28329 1.88881 1.23364 0.76789 1.05550 1.02125 1.21575 1.01551 0.90704 1.01461 1.21124 0.91999 0.99446 1.02140 1.18140 0.91712 0.85978 0.95014 1.43922 1.25863 1.07882 1.55155 1.17390 0.86809 0.82956 0.78836 1.90564 1.24215 1.84772 1.50041 1.20547 1.08501 0.96795 1.33935 0.90073 1.26974 0.96443 1.02917 0.92019 1.70128 1.19733 1.29117 1.23419 0.84969 0.78480 0.75712 0.78966 1.18016 1.19072 1.17783 0.91756 0.92377 0.84131 0.81721 0.85573 0.92424 0.91751 0.82423 0.85915 0.75523 0.90849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.57 113.37 1.20 1.79 16 2 O -0.35 -10.01 9.83 -56.64 -0.56 -10.57 16 3 C 0.52 18.99 7.87 70.23 0.55 19.54 16 4 O -0.53 -22.43 13.78 19.79 0.27 -22.16 16 5 C -0.16 -6.26 5.89 -19.98 -0.12 -6.38 16 6 C -0.07 -2.12 9.55 22.64 0.22 -1.91 16 7 C 0.08 2.39 6.68 22.51 0.15 2.54 16 8 O -0.32 -8.14 10.49 -92.72 -0.97 -9.12 16 9 C 0.02 0.27 9.81 113.37 1.11 1.38 16 10 C -0.13 -4.44 9.02 22.39 0.20 -4.24 16 11 C -0.13 -5.48 8.67 22.38 0.19 -5.28 16 12 C 0.19 8.78 6.30 38.76 0.24 9.02 16 13 N -0.68 -35.00 4.52 -310.75 -1.40 -36.41 16 14 C 0.53 31.91 7.40 85.13 0.63 32.54 16 15 O -0.61 -39.99 12.32 -4.53 -0.06 -40.05 16 16 C -0.56 -32.99 9.31 23.62 0.22 -32.77 16 17 H 0.08 4.42 7.85 -2.91 -0.02 4.39 16 18 C 0.04 1.95 5.49 85.33 0.47 2.42 16 19 N -0.80 -47.65 11.75 21.85 0.26 -47.39 16 20 Si 1.00 40.98 29.56 68.60 2.03 43.00 16 21 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 22 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 23 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 24 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.14 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.17 4.29 7.62 -2.91 -0.02 4.26 16 28 H 0.13 1.36 8.14 -2.38 -0.02 1.34 16 29 H 0.06 0.96 7.65 -2.39 -0.02 0.94 16 30 H 0.06 0.97 7.65 -2.39 -0.02 0.95 16 31 H 0.16 4.17 6.27 -2.91 -0.02 4.15 16 32 H 0.12 6.17 6.23 -2.91 -0.02 6.15 16 33 H 0.41 19.75 6.54 -92.71 -0.61 19.14 16 34 H 0.28 15.04 8.29 -92.71 -0.77 14.27 16 Total: -1.00 -77.49 300.78 5.19 -72.30 By element: Atomic # 1 Polarization: 31.19 SS G_CDS: 0.55 Total: 31.74 kcal Atomic # 6 Polarization: 13.58 SS G_CDS: 5.07 Total: 18.65 kcal Atomic # 7 Polarization: -82.65 SS G_CDS: -1.15 Total: -83.80 kcal Atomic # 8 Polarization: -80.58 SS G_CDS: -1.31 Total: -81.89 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.00 kcal Total: -77.49 5.19 -72.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083378087.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.892 kcal (2) G-P(sol) polarization free energy of solvation -77.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds