Wall clock time and date at job start Tue Mar 31 2020 00:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34794 * 117.00035 * 2 1 4 4 O 1.21547 * 119.99980 * 359.97438 * 3 2 1 5 5 C 1.47148 * 120.00354 * 179.97438 * 3 2 1 6 6 C 1.39947 * 120.11358 * 0.02562 * 5 3 2 7 7 C 1.36465 * 120.11409 * 179.97438 * 6 5 3 8 8 C 1.39443 * 120.34419 * 0.02562 * 7 6 5 9 9 N 1.39098 * 119.88303 * 180.02562 * 8 7 6 10 10 C 1.34777 * 119.99840 * 33.69594 * 9 8 7 11 11 O 1.21725 * 120.00028 * 5.28714 * 10 9 8 12 12 C 1.46200 * 119.99896 * 185.27889 * 10 9 8 13 13 H 1.07995 * 119.99642 * 0.02562 * 12 10 9 14 14 C 1.40126 * 120.00088 * 180.02562 * 12 10 9 15 15 N 1.30642 * 119.99480 * 0.02562 * 14 12 10 16 16 Si 1.86795 * 120.00118 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47231 * 60.00013 * 16 14 12 18 18 H 1.48501 * 109.47278 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.46863 * 300.00277 * 16 14 12 20 20 C 1.38977 * 120.23486 * 359.72295 * 8 7 6 21 21 C 1.38403 * 119.88175 * 0.55301 * 20 8 7 22 22 O 1.35646 * 120.17063 * 179.72650 * 21 20 8 23 23 C 1.42899 * 117.00188 * 359.72185 * 22 21 20 24 24 H 1.09005 * 109.46767 * 60.00079 * 1 2 3 25 25 H 1.08993 * 109.47249 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47046 * 300.00294 * 1 2 3 27 27 H 1.08005 * 119.94560 * 0.02562 * 6 5 3 28 28 H 1.07996 * 119.82580 * 180.02562 * 7 6 5 29 29 H 0.97000 * 119.99933 * 213.70227 * 9 8 7 30 30 H 0.97001 * 119.99246 * 179.97438 * 15 14 12 31 31 H 1.07998 * 120.05601 * 180.28096 * 20 8 7 32 32 H 1.08991 * 109.47321 * 180.02562 * 23 22 21 33 33 H 1.09009 * 109.47166 * 60.00130 * 23 22 21 34 34 H 1.08997 * 109.47181 * 300.00937 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2010 0.0000 4 8 1.4020 2.2204 -0.0005 5 6 3.5335 1.2781 0.0006 6 6 4.2981 0.1060 0.0006 7 6 5.6608 0.1775 0.0006 8 6 6.3013 1.4161 0.0011 9 7 7.6909 1.4778 0.0006 10 6 8.4069 0.5379 -0.6479 11 8 7.8388 -0.3089 -1.3126 12 6 9.8658 0.5357 -0.5531 13 1 10.3697 1.2869 0.0369 14 6 10.6103 -0.4411 -1.2277 15 7 10.0006 -1.3495 -1.9418 16 14 12.4742 -0.4444 -1.1060 17 1 12.8773 -0.6036 0.3143 18 1 13.0205 -1.5705 -1.9053 19 1 13.0068 0.8386 -1.6308 20 6 5.5561 2.5892 -0.0042 21 6 4.1735 2.5279 0.0016 22 8 3.4404 3.6692 0.0021 23 6 4.1611 4.9032 0.0027 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 3.8088 -0.8569 -0.0003 28 1 6.2463 -0.7300 0.0002 29 1 8.1446 2.1972 0.4670 30 1 10.5160 -2.0255 -2.4091 31 1 6.0552 3.5470 -0.0083 32 1 3.4571 5.7352 0.0035 33 1 4.7881 4.9582 -0.8874 34 1 4.7882 4.9573 0.8926 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083378090.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:51 Heat of formation + Delta-G solvation = -130.891233 kcal Electronic energy + Delta-G solvation = -21155.915484 eV Core-core repulsion = 17633.643605 eV Total energy + Delta-G solvation = -3522.271879 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.46783 -39.40075 -38.38249 -36.40539 -35.96588 -33.65104 -32.62160 -30.07380 -29.76624 -27.76175 -27.08145 -26.27099 -23.35871 -22.00680 -20.98569 -20.00722 -17.88808 -17.85197 -17.19321 -16.53898 -16.11982 -15.84282 -15.52037 -15.42993 -14.95054 -14.36588 -14.18545 -13.68976 -13.31769 -13.14635 -12.76623 -12.71261 -12.28212 -12.05890 -11.92695 -11.53431 -11.39796 -11.19874 -11.05832 -10.83619 -10.74093 -10.57959 -10.45590 -10.05327 -9.44854 -9.01994 -8.19811 -7.91766 -7.32233 -6.47252 -4.95995 1.19199 1.87050 2.95122 2.99854 3.03552 3.07784 3.09560 3.40865 3.88173 4.10091 4.35330 4.41502 5.08541 5.15652 5.17602 5.19770 5.24501 5.25046 5.45220 5.53403 5.55812 5.63190 5.71286 5.91241 5.99098 6.32453 6.62796 6.78815 6.84925 7.05920 7.17102 7.46559 7.57934 7.84179 7.98410 8.15793 8.71827 8.99789 10.21110 10.42469 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.028352 B = 0.004036 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.361052 B = 6936.506505 C = 7797.380103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.361 6.361 3 C 0.515 3.485 4 O -0.508 6.508 5 C -0.219 4.219 6 C -0.007 4.007 7 C -0.177 4.177 8 C 0.275 3.725 9 N -0.692 5.692 10 C 0.538 3.462 11 O -0.552 6.552 12 C -0.535 4.535 13 H 0.073 0.927 14 C 0.086 3.914 15 N -0.755 5.755 16 Si 0.915 3.085 17 H -0.266 1.266 18 H -0.278 1.278 19 H -0.266 1.266 20 C -0.286 4.286 21 C 0.214 3.786 22 O -0.289 6.289 23 C 0.023 3.977 24 H 0.059 0.941 25 H 0.097 0.903 26 H 0.059 0.941 27 H 0.138 0.862 28 H 0.148 0.852 29 H 0.397 0.603 30 H 0.275 0.725 31 H 0.133 0.867 32 H 0.097 0.903 33 H 0.056 0.944 34 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.513 5.886 4.899 12.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.278 6.278 3 C 0.362 3.638 4 O -0.397 6.397 5 C -0.222 4.222 6 C -0.026 4.026 7 C -0.198 4.198 8 C 0.172 3.828 9 N -0.333 5.333 10 C 0.345 3.655 11 O -0.433 6.433 12 C -0.571 4.571 13 H 0.092 0.908 14 C -0.136 4.136 15 N -0.383 5.383 16 Si 0.739 3.261 17 H -0.190 1.190 18 H -0.203 1.203 19 H -0.191 1.191 20 C -0.309 4.309 21 C 0.166 3.834 22 O -0.200 6.200 23 C -0.072 4.072 24 H 0.078 0.922 25 H 0.115 0.885 26 H 0.077 0.923 27 H 0.156 0.844 28 H 0.166 0.834 29 H 0.231 0.769 30 H 0.086 0.914 31 H 0.151 0.849 32 H 0.115 0.885 33 H 0.075 0.925 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.200 5.386 4.270 12.300 hybrid contribution 1.245 0.640 0.208 1.415 sum -8.955 6.025 4.478 11.686 Atomic orbital electron populations 1.23152 0.76992 1.03134 1.02185 1.86575 1.22727 1.33372 1.85137 1.20916 0.88912 0.81083 0.72884 1.90830 1.66633 1.35645 1.46624 1.18103 0.88816 0.91808 1.23486 1.20823 0.93293 0.96655 0.91844 1.21011 0.93989 0.98385 1.06449 1.17979 0.85161 0.92616 0.87094 1.44372 1.02454 1.31752 1.54739 1.18471 0.88220 0.79879 0.78920 1.90665 1.71667 1.38293 1.42672 1.20834 0.89037 1.14965 1.32265 0.90842 1.25757 1.00639 0.94025 0.93200 1.69964 1.37228 1.10459 1.20618 0.86293 0.81930 0.78644 0.79199 1.19029 1.20288 1.19086 1.20821 0.91945 0.98718 1.19429 1.18588 0.89094 0.85211 0.90497 1.86280 1.34335 1.12314 1.87101 1.23098 0.98056 0.84600 1.01474 0.92234 0.88461 0.92273 0.84430 0.83441 0.76915 0.91438 0.84925 0.88452 0.92523 0.92628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.57 101.05 1.07 1.50 16 2 O -0.36 -5.46 9.80 -40.75 -0.40 -5.86 16 3 C 0.52 9.10 7.88 34.35 0.27 9.37 16 4 O -0.51 -9.83 14.94 -26.64 -0.40 -10.23 16 5 C -0.22 -3.96 5.89 -104.82 -0.62 -4.57 16 6 C -0.01 -0.12 9.55 -39.58 -0.38 -0.50 16 7 C -0.18 -3.60 8.57 -39.77 -0.34 -3.94 16 8 C 0.27 5.45 6.26 -83.84 -0.53 4.92 16 9 N -0.69 -14.46 5.30 -11.21 -0.06 -14.52 16 10 C 0.54 14.05 7.46 -13.06 -0.10 13.95 16 11 O -0.55 -16.33 12.69 5.17 0.07 -16.26 16 12 C -0.54 -13.83 9.54 -35.68 -0.34 -14.17 16 13 H 0.07 1.70 7.85 -52.49 -0.41 1.29 16 14 C 0.09 2.21 5.50 -17.35 -0.10 2.11 16 15 N -0.76 -20.99 11.83 55.55 0.66 -20.34 16 16 Si 0.92 18.62 29.56 -169.99 -5.02 13.59 16 17 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 18 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 19 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 20 C -0.29 -4.90 8.94 -39.25 -0.35 -5.25 16 21 C 0.21 3.78 6.70 -38.70 -0.26 3.52 16 22 O -0.29 -4.80 8.56 -40.56 -0.35 -5.15 16 23 C 0.02 0.27 9.81 101.05 0.99 1.26 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.14 2.14 7.60 -52.48 -0.40 1.74 16 28 H 0.15 3.35 6.41 -52.49 -0.34 3.01 16 29 H 0.40 6.92 8.79 -40.82 -0.36 6.57 16 30 H 0.27 6.93 8.29 -40.82 -0.34 6.60 16 31 H 0.13 1.90 6.30 -52.49 -0.33 1.57 16 32 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.06 0.61 7.65 -51.92 -0.40 0.22 16 34 H 0.06 0.56 7.67 -51.93 -0.40 0.16 16 LS Contribution 303.79 15.07 4.58 4.58 Total: -1.00 -33.42 303.79 -5.06 -38.48 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -3.46 Total: 7.51 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: -0.67 Total: 8.20 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: 0.60 Total: -34.86 kcal Atomic # 8 Polarization: -36.42 SS G_CDS: -1.08 Total: -37.50 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.02 Total: 13.59 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.42 -5.06 -38.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083378090.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.413 kcal (2) G-P(sol) polarization free energy of solvation -33.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds