Wall clock time and date at job start Tue Mar 31 2020 00:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34794 * 117.00035 * 2 1 4 4 O 1.21547 * 119.99980 * 359.97438 * 3 2 1 5 5 C 1.47148 * 120.00354 * 179.97438 * 3 2 1 6 6 C 1.39947 * 120.11358 * 0.02562 * 5 3 2 7 7 C 1.36465 * 120.11409 * 179.97438 * 6 5 3 8 8 C 1.39443 * 120.34419 * 0.02562 * 7 6 5 9 9 N 1.39098 * 119.88303 * 180.02562 * 8 7 6 10 10 C 1.34777 * 119.99840 * 33.69594 * 9 8 7 11 11 O 1.21725 * 120.00028 * 5.28714 * 10 9 8 12 12 C 1.46200 * 119.99896 * 185.27889 * 10 9 8 13 13 H 1.07995 * 119.99642 * 0.02562 * 12 10 9 14 14 C 1.40126 * 120.00088 * 180.02562 * 12 10 9 15 15 N 1.30642 * 119.99480 * 0.02562 * 14 12 10 16 16 Si 1.86795 * 120.00118 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47231 * 60.00013 * 16 14 12 18 18 H 1.48501 * 109.47278 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.46863 * 300.00277 * 16 14 12 20 20 C 1.38977 * 120.23486 * 359.72295 * 8 7 6 21 21 C 1.38403 * 119.88175 * 0.55301 * 20 8 7 22 22 O 1.35646 * 120.17063 * 179.72650 * 21 20 8 23 23 C 1.42899 * 117.00188 * 359.72185 * 22 21 20 24 24 H 1.09005 * 109.46767 * 60.00079 * 1 2 3 25 25 H 1.08993 * 109.47249 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47046 * 300.00294 * 1 2 3 27 27 H 1.08005 * 119.94560 * 0.02562 * 6 5 3 28 28 H 1.07996 * 119.82580 * 180.02562 * 7 6 5 29 29 H 0.97000 * 119.99933 * 213.70227 * 9 8 7 30 30 H 0.97001 * 119.99246 * 179.97438 * 15 14 12 31 31 H 1.07998 * 120.05601 * 180.28096 * 20 8 7 32 32 H 1.08991 * 109.47321 * 180.02562 * 23 22 21 33 33 H 1.09009 * 109.47166 * 60.00130 * 23 22 21 34 34 H 1.08997 * 109.47181 * 300.00937 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2010 0.0000 4 8 1.4020 2.2204 -0.0005 5 6 3.5335 1.2781 0.0006 6 6 4.2981 0.1060 0.0006 7 6 5.6608 0.1775 0.0006 8 6 6.3013 1.4161 0.0011 9 7 7.6909 1.4778 0.0006 10 6 8.4069 0.5379 -0.6479 11 8 7.8388 -0.3089 -1.3126 12 6 9.8658 0.5357 -0.5531 13 1 10.3697 1.2869 0.0369 14 6 10.6103 -0.4411 -1.2277 15 7 10.0006 -1.3495 -1.9418 16 14 12.4742 -0.4444 -1.1060 17 1 12.8773 -0.6036 0.3143 18 1 13.0205 -1.5705 -1.9053 19 1 13.0068 0.8386 -1.6308 20 6 5.5561 2.5892 -0.0042 21 6 4.1735 2.5279 0.0016 22 8 3.4404 3.6692 0.0021 23 6 4.1611 4.9032 0.0027 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 3.8088 -0.8569 -0.0003 28 1 6.2463 -0.7300 0.0002 29 1 8.1446 2.1972 0.4670 30 1 10.5160 -2.0255 -2.4091 31 1 6.0552 3.5470 -0.0083 32 1 3.4571 5.7352 0.0035 33 1 4.7881 4.9582 -0.8874 34 1 4.7882 4.9573 0.8926 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083378090.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:50 Heat of formation + Delta-G solvation = -153.500765 kcal Electronic energy + Delta-G solvation = -21156.895907 eV Core-core repulsion = 17633.643605 eV Total energy + Delta-G solvation = -3523.252302 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.84154 -40.78739 -39.93783 -37.99224 -37.27504 -35.38127 -34.58079 -31.57858 -31.17690 -28.87251 -28.57052 -27.64738 -24.86606 -23.43733 -22.46634 -21.59983 -19.62373 -19.24465 -18.61926 -17.95234 -17.51381 -17.34405 -17.07961 -16.60283 -16.39562 -15.92232 -15.63353 -15.21124 -14.71153 -14.45701 -14.30244 -14.19736 -13.69038 -13.48790 -13.19907 -12.99474 -12.77438 -12.75354 -12.59142 -12.38253 -12.11918 -12.06329 -11.71892 -11.44089 -11.08504 -10.87328 -9.98841 -9.55095 -8.93437 -8.38731 -6.97272 -0.26794 0.43992 1.41693 1.42494 1.55475 1.57354 1.81010 2.18261 2.25083 2.35529 2.72882 2.82382 3.53458 3.77540 3.90525 4.08499 4.22584 4.35379 4.38024 4.38429 4.39975 4.48705 4.59671 4.71462 4.74499 4.95081 5.24519 5.26900 5.32785 5.41012 5.53042 5.75148 6.07213 6.13909 6.35580 6.76212 6.83142 7.23063 8.28388 8.53849 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.028352 B = 0.004036 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.361052 B = 6936.506505 C = 7797.380103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.364 6.364 3 C 0.518 3.482 4 O -0.527 6.527 5 C -0.228 4.228 6 C 0.005 3.995 7 C -0.199 4.199 8 C 0.252 3.748 9 N -0.684 5.684 10 C 0.527 3.473 11 O -0.598 6.598 12 C -0.561 4.561 13 H 0.097 0.903 14 C 0.031 3.969 15 N -0.809 5.809 16 Si 1.000 3.000 17 H -0.254 1.254 18 H -0.276 1.276 19 H -0.254 1.254 20 C -0.268 4.268 21 C 0.214 3.786 22 O -0.305 6.305 23 C 0.011 3.989 24 H 0.060 0.940 25 H 0.133 0.867 26 H 0.063 0.937 27 H 0.156 0.844 28 H 0.115 0.885 29 H 0.413 0.587 30 H 0.279 0.721 31 H 0.164 0.836 32 H 0.122 0.878 33 H 0.065 0.935 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.370 7.414 5.608 13.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.281 6.281 3 C 0.365 3.635 4 O -0.419 6.419 5 C -0.231 4.231 6 C -0.014 4.014 7 C -0.220 4.220 8 C 0.150 3.850 9 N -0.327 5.327 10 C 0.334 3.666 11 O -0.483 6.483 12 C -0.596 4.596 13 H 0.115 0.885 14 C -0.186 4.186 15 N -0.438 5.438 16 Si 0.819 3.181 17 H -0.177 1.177 18 H -0.200 1.200 19 H -0.178 1.178 20 C -0.290 4.290 21 C 0.165 3.835 22 O -0.216 6.216 23 C -0.084 4.084 24 H 0.079 0.921 25 H 0.151 0.849 26 H 0.082 0.918 27 H 0.173 0.827 28 H 0.133 0.867 29 H 0.250 0.750 30 H 0.089 0.911 31 H 0.181 0.819 32 H 0.140 0.860 33 H 0.083 0.917 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.097 6.960 5.016 13.250 hybrid contribution 0.969 0.234 0.019 0.998 sum -9.128 7.194 5.035 12.666 Atomic orbital electron populations 1.23538 0.74513 1.05656 1.02497 1.86558 1.25134 1.31927 1.84477 1.20814 0.88681 0.81520 0.72455 1.90811 1.66964 1.36422 1.47654 1.18367 0.89558 0.92195 1.22985 1.20885 0.92241 0.97684 0.90618 1.20831 0.94848 0.97671 1.08661 1.18135 0.84718 0.93458 0.88659 1.43854 1.02937 1.31287 1.54601 1.18780 0.88993 0.80029 0.78750 1.90628 1.72629 1.40312 1.44717 1.21396 0.89413 1.15921 1.32880 0.88526 1.26978 1.06535 0.93008 0.92051 1.70126 1.39823 1.11690 1.22120 0.85015 0.74312 0.79036 0.79704 1.17743 1.20040 1.17751 1.20958 0.91694 0.98879 1.17515 1.18704 0.89238 0.85817 0.89732 1.86276 1.35476 1.13244 1.86621 1.23487 0.99101 0.83037 1.02725 0.92111 0.84907 0.91813 0.82688 0.86699 0.75012 0.91098 0.81893 0.86025 0.91680 0.90851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.57 113.37 1.20 1.82 16 2 O -0.36 -10.52 9.80 -57.05 -0.56 -11.08 16 3 C 0.52 17.78 7.88 70.16 0.55 18.33 16 4 O -0.53 -19.80 14.94 26.70 0.40 -19.40 16 5 C -0.23 -8.10 5.89 -19.99 -0.12 -8.22 16 6 C 0.00 0.17 9.55 22.27 0.21 0.38 16 7 C -0.20 -8.37 8.57 22.15 0.19 -8.18 16 8 C 0.25 10.07 6.26 38.46 0.24 10.31 16 9 N -0.68 -28.85 5.30 -307.58 -1.63 -30.48 16 10 C 0.53 28.32 7.46 86.31 0.64 28.96 16 11 O -0.60 -37.10 12.69 -4.43 -0.06 -37.16 16 12 C -0.56 -29.16 9.54 24.80 0.24 -28.93 16 13 H 0.10 4.38 7.85 -2.91 -0.02 4.36 16 14 C 0.03 1.62 5.50 85.33 0.47 2.09 16 15 N -0.81 -46.38 11.83 21.85 0.26 -46.12 16 16 Si 1.00 37.81 29.56 68.60 2.03 39.84 16 17 H -0.25 -9.01 7.11 99.48 0.71 -8.31 16 18 H -0.28 -10.18 7.11 99.48 0.71 -9.48 16 19 H -0.25 -9.00 7.11 99.48 0.71 -8.30 16 20 C -0.27 -8.82 8.94 22.49 0.20 -8.62 16 21 C 0.21 7.27 6.70 22.84 0.15 7.43 16 22 O -0.30 -9.52 8.56 -68.65 -0.59 -10.11 16 23 C 0.01 0.21 9.81 113.37 1.11 1.32 16 24 H 0.06 1.21 8.14 -2.38 -0.02 1.20 16 25 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.16 4.85 7.60 -2.91 -0.02 4.83 16 28 H 0.11 5.60 6.41 -2.91 -0.02 5.58 16 29 H 0.41 14.15 8.79 -92.71 -0.82 13.33 16 30 H 0.28 14.52 8.29 -92.71 -0.77 13.75 16 31 H 0.16 4.23 6.30 -2.91 -0.02 4.21 16 32 H 0.12 1.85 8.14 -2.39 -0.02 1.84 16 33 H 0.06 1.21 7.65 -2.38 -0.02 1.20 16 34 H 0.07 1.23 7.67 -2.39 -0.02 1.21 16 Total: -1.00 -74.78 303.79 5.29 -69.50 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: 0.34 Total: 28.31 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: 5.09 Total: 16.69 kcal Atomic # 7 Polarization: -75.23 SS G_CDS: -1.37 Total: -76.60 kcal Atomic # 8 Polarization: -76.94 SS G_CDS: -0.80 Total: -77.74 kcal Atomic # 14 Polarization: 37.81 SS G_CDS: 2.03 Total: 39.84 kcal Total: -74.78 5.29 -69.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083378090.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.003 kcal (2) G-P(sol) polarization free energy of solvation -74.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds