Wall clock time and date at job start Tue Mar 31 2020 00:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50705 * 119.99950 * 2 1 4 4 N 1.46502 * 109.46800 * 125.00380 * 3 2 1 5 5 N 1.40595 * 127.38207 * 269.95443 * 4 3 2 6 6 N 1.28902 * 106.82877 * 180.02562 * 5 4 3 7 7 N 1.28415 * 110.34690 * 359.72709 * 6 5 4 8 8 C 1.31546 * 110.49791 * 0.45676 * 7 6 5 9 9 S 1.76204 * 126.45264 * 179.81334 * 8 7 6 10 10 C 1.80997 * 100.00127 * 359.69452 * 9 8 7 11 11 C 1.52994 * 109.47345 * 179.97438 * 10 9 8 12 12 H 1.09009 * 109.47154 * 54.99891 * 11 10 9 13 13 C 1.47200 * 109.47451 * 294.99953 * 11 10 9 14 14 N 6.43749 * 149.48162 * 199.73200 * 2 1 3 15 15 C 1.52996 * 109.47347 * 174.99735 * 11 10 9 16 16 C 1.50702 * 109.47159 * 185.00014 * 15 11 10 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 11 18 18 C 1.37884 * 119.99942 * 179.72211 * 16 15 11 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48496 * 109.47341 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46983 * 120.00379 * 20 18 16 23 23 H 1.48503 * 109.47491 * 240.00192 * 20 18 16 24 24 H 1.07997 * 120.00119 * 359.97438 * 1 2 3 25 25 H 1.07997 * 119.99582 * 180.02562 * 1 2 3 26 26 H 1.07997 * 120.00119 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.46732 * 5.00386 * 3 2 1 28 28 H 1.09003 * 109.47225 * 245.00033 * 3 2 1 29 29 H 1.08998 * 109.47355 * 59.99627 * 10 9 8 30 30 H 1.09002 * 109.47315 * 299.99850 * 10 9 8 31 31 H 1.09004 * 109.47066 * 65.00217 * 15 11 10 32 32 H 1.08994 * 109.47405 * 305.00047 * 15 11 10 33 33 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3318 1.1314 5 7 2.7437 1.8057 2.4312 6 7 3.8312 1.6426 3.1037 7 7 4.7372 1.1107 2.3653 8 6 4.2789 0.9060 1.1493 9 16 5.1678 0.2031 -0.2000 10 6 6.7655 -0.0941 0.5969 11 6 7.7299 -0.7209 -0.4120 12 1 7.7961 -0.0850 -1.2949 13 6 7.2357 -2.0516 -0.8017 14 7 6.8557 -3.0771 -1.1037 15 6 9.1150 -0.8572 0.2233 16 6 10.0931 -1.3597 -0.8073 17 1 9.7601 -1.5613 -1.8147 18 6 11.4144 -1.5562 -0.4656 19 7 11.8199 -1.3104 0.7610 20 14 12.6282 -2.1718 -1.7450 21 1 11.9262 -2.3703 -3.0384 22 1 13.7129 -1.1725 -1.9194 23 1 13.2110 -3.4613 -1.2946 24 1 -0.5400 0.9353 0.0004 25 1 -0.5399 -0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6213 1.4027 -0.9314 29 1 6.6308 -0.7719 1.4397 30 1 7.1754 0.8512 0.9528 31 1 9.0665 -1.5629 1.0526 32 1 9.4430 0.1146 0.5919 33 1 12.7494 -1.4490 1.0015 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133158992.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:35 Heat of formation + Delta-G solvation = 152.358685 kcal Electronic energy + Delta-G solvation = -18049.055252 eV Core-core repulsion = 15046.404385 eV Total energy + Delta-G solvation = -3002.650868 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.085 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.95775 -36.98255 -36.63849 -34.14946 -33.26327 -32.46640 -32.19504 -28.05357 -27.71896 -24.57936 -23.48113 -23.11043 -21.96679 -20.67772 -18.39219 -17.19840 -16.98391 -16.68484 -16.52742 -15.54380 -15.18453 -14.51547 -14.34142 -14.12183 -13.72948 -13.15710 -13.05339 -12.61572 -12.51892 -12.28422 -12.10513 -12.09762 -11.61331 -11.37672 -11.21361 -11.12431 -11.01254 -10.77072 -10.62227 -10.57511 -10.42949 -10.13977 -9.70886 -9.35265 -8.54108 -8.14374 -6.17506 -4.22228 0.56802 0.74146 1.39563 1.80796 2.13255 2.20082 3.23951 3.32721 3.35427 3.37141 3.45274 3.94278 4.17490 4.33779 4.46784 4.52573 4.64575 4.88136 5.03189 5.13910 5.20707 5.22084 5.27601 5.34827 5.73029 5.78501 5.98914 6.06259 6.07415 6.21927 7.30585 7.37652 7.75876 8.09565 8.19723 8.30635 8.81807 9.44057 10.93058 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.030267 B = 0.003641 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.879684 B = 7688.741923 C = 8334.967085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.188 4.188 3 C 0.151 3.849 4 N -0.364 5.364 5 N -0.086 5.086 6 N -0.032 5.032 7 N -0.330 5.330 8 C 0.221 3.779 9 S 0.021 5.979 10 C -0.096 4.096 11 C 0.023 3.977 12 H 0.115 0.885 13 C 0.232 3.768 14 N -0.453 5.453 15 C 0.037 3.963 16 C -0.531 4.531 17 H 0.059 0.941 18 C 0.065 3.935 19 N -0.887 5.887 20 Si 0.893 3.107 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.283 1.283 24 H 0.104 0.896 25 H 0.109 0.891 26 H 0.122 0.878 27 H 0.113 0.887 28 H 0.116 0.884 29 H 0.108 0.892 30 H 0.123 0.877 31 H 0.032 0.968 32 H 0.045 0.955 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.930 6.988 -3.158 20.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.207 4.207 3 C 0.030 3.970 4 N -0.163 5.163 5 N -0.073 5.073 6 N -0.028 5.028 7 N -0.186 5.186 8 C -0.163 4.163 9 S 0.248 5.752 10 C -0.245 4.245 11 C -0.001 4.001 12 H 0.133 0.867 13 C -0.086 4.086 14 N -0.129 5.129 15 C -0.003 4.003 16 C -0.569 4.569 17 H 0.077 0.923 18 C -0.138 4.138 19 N -0.525 5.525 20 Si 0.721 3.279 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.209 1.209 24 H 0.122 0.878 25 H 0.127 0.873 26 H 0.140 0.860 27 H 0.131 0.869 28 H 0.134 0.866 29 H 0.127 0.873 30 H 0.141 0.859 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.861 5.700 -3.250 20.917 hybrid contribution 1.108 0.019 -0.170 1.121 sum -18.753 5.719 -3.419 19.901 Atomic orbital electron populations 1.24017 0.95350 1.02903 0.96254 1.23062 0.96532 0.97775 1.03376 1.21140 0.91905 0.98515 0.85485 1.51650 1.09061 1.44282 1.11300 1.82445 1.18722 1.19770 0.86400 1.77867 0.94364 1.08427 1.22160 1.75015 1.24510 1.20154 0.98924 1.27877 0.87782 0.99960 1.00713 1.85982 1.10299 1.72459 1.06435 1.24062 0.91097 1.07384 1.01996 1.19074 0.96903 0.85299 0.98855 0.86749 1.28918 0.91796 0.94988 0.92885 1.80982 1.10930 1.11685 1.09310 1.19247 0.84959 0.99508 0.96539 1.21111 0.93494 1.45591 0.96751 0.92269 1.24948 0.98422 0.95078 0.95391 1.69945 1.16855 1.47991 1.17749 0.86512 0.81127 0.78605 0.81699 1.19638 1.20764 1.20915 0.87793 0.87262 0.86023 0.86896 0.86620 0.87322 0.85908 0.94989 0.93640 0.92654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 14.32 29.01 0.42 -0.43 16 2 C -0.19 -1.39 9.85 -36.02 -0.35 -1.74 16 3 C 0.15 1.13 6.81 -5.19 -0.04 1.09 16 4 N -0.36 -4.30 3.67 -62.48 -0.23 -4.53 16 5 N -0.09 -1.23 13.93 60.35 0.84 -0.39 16 6 N -0.03 -0.52 13.38 60.35 0.81 0.28 16 7 N -0.33 -5.21 11.57 30.50 0.35 -4.85 16 8 C 0.22 2.94 8.15 -89.18 -0.73 2.22 16 9 S 0.02 0.25 21.19 -107.50 -2.28 -2.03 16 10 C -0.10 -1.31 4.65 37.15 0.17 -1.13 16 11 C 0.02 0.37 2.21 -93.41 -0.21 0.17 16 12 H 0.11 1.67 8.14 -51.92 -0.42 1.25 16 13 C 0.23 4.32 13.30 -20.81 -0.28 4.04 16 14 N -0.45 -9.24 18.53 42.10 0.78 -8.46 16 15 C 0.04 0.81 4.42 -27.88 -0.12 0.68 16 16 C -0.53 -13.35 8.60 -34.44 -0.30 -13.65 16 17 H 0.06 1.47 7.59 -52.49 -0.40 1.07 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -24.58 13.29 55.43 0.74 -23.85 16 20 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H 0.10 0.44 7.84 -52.49 -0.41 0.03 16 25 H 0.11 0.54 8.06 -52.49 -0.42 0.12 16 26 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 27 H 0.11 0.62 7.79 -51.93 -0.40 0.22 16 28 H 0.12 0.67 7.85 -51.93 -0.41 0.26 16 29 H 0.11 1.55 8.14 -51.92 -0.42 1.13 16 30 H 0.12 1.57 8.14 -51.92 -0.42 1.14 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 320.39 15.07 4.83 4.83 Total: -1.00 -30.81 320.39 -4.43 -35.24 By element: Atomic # 1 Polarization: -0.88 SS G_CDS: -3.72 Total: -4.60 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: -1.53 Total: -7.14 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: 3.29 Total: -41.80 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 0.25 SS G_CDS: -2.28 Total: -2.03 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.81 -4.43 -35.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133158992.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.594 kcal (2) G-P(sol) polarization free energy of solvation -30.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds