Wall clock time and date at job start Tue Mar 31 2020 00:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50705 * 119.99950 * 2 1 4 4 N 1.46502 * 109.46800 * 125.00380 * 3 2 1 5 5 N 1.40595 * 127.38207 * 269.95443 * 4 3 2 6 6 N 1.28902 * 106.82877 * 180.02562 * 5 4 3 7 7 N 1.28415 * 110.34690 * 359.72709 * 6 5 4 8 8 C 1.31546 * 110.49791 * 0.45676 * 7 6 5 9 9 S 1.76204 * 126.45264 * 179.81334 * 8 7 6 10 10 C 1.80997 * 100.00127 * 359.69452 * 9 8 7 11 11 C 1.52994 * 109.47345 * 179.97438 * 10 9 8 12 12 H 1.09009 * 109.47154 * 54.99891 * 11 10 9 13 13 C 1.47200 * 109.47451 * 294.99953 * 11 10 9 14 14 N 6.43749 * 149.48162 * 199.73200 * 2 1 3 15 15 C 1.52996 * 109.47347 * 174.99735 * 11 10 9 16 16 C 1.50702 * 109.47159 * 185.00014 * 15 11 10 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 11 18 18 C 1.37884 * 119.99942 * 179.72211 * 16 15 11 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48496 * 109.47341 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46983 * 120.00379 * 20 18 16 23 23 H 1.48503 * 109.47491 * 240.00192 * 20 18 16 24 24 H 1.07997 * 120.00119 * 359.97438 * 1 2 3 25 25 H 1.07997 * 119.99582 * 180.02562 * 1 2 3 26 26 H 1.07997 * 120.00119 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.46732 * 5.00386 * 3 2 1 28 28 H 1.09003 * 109.47225 * 245.00033 * 3 2 1 29 29 H 1.08998 * 109.47355 * 59.99627 * 10 9 8 30 30 H 1.09002 * 109.47315 * 299.99850 * 10 9 8 31 31 H 1.09004 * 109.47066 * 65.00217 * 15 11 10 32 32 H 1.08994 * 109.47405 * 305.00047 * 15 11 10 33 33 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3318 1.1314 5 7 2.7437 1.8057 2.4312 6 7 3.8312 1.6426 3.1037 7 7 4.7372 1.1107 2.3653 8 6 4.2789 0.9060 1.1493 9 16 5.1678 0.2031 -0.2000 10 6 6.7655 -0.0941 0.5969 11 6 7.7299 -0.7209 -0.4120 12 1 7.7961 -0.0850 -1.2949 13 6 7.2357 -2.0516 -0.8017 14 7 6.8557 -3.0771 -1.1037 15 6 9.1150 -0.8572 0.2233 16 6 10.0931 -1.3597 -0.8073 17 1 9.7601 -1.5613 -1.8147 18 6 11.4144 -1.5562 -0.4656 19 7 11.8199 -1.3104 0.7610 20 14 12.6282 -2.1718 -1.7450 21 1 11.9262 -2.3703 -3.0384 22 1 13.7129 -1.1725 -1.9194 23 1 13.2110 -3.4613 -1.2946 24 1 -0.5400 0.9353 0.0004 25 1 -0.5399 -0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6213 1.4027 -0.9314 29 1 6.6308 -0.7719 1.4397 30 1 7.1754 0.8512 0.9528 31 1 9.0665 -1.5629 1.0526 32 1 9.4430 0.1146 0.5919 33 1 12.7494 -1.4490 1.0015 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133158992.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:35 Heat of formation + Delta-G solvation = 134.192099 kcal Electronic energy + Delta-G solvation = -18049.843015 eV Core-core repulsion = 15046.404385 eV Total energy + Delta-G solvation = -3003.438630 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.085 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.00499 -38.47805 -37.38174 -35.78924 -34.18602 -33.99610 -33.36370 -29.64204 -28.52270 -26.00512 -24.63875 -24.17651 -23.58894 -21.24124 -19.39536 -18.48655 -18.37185 -17.99240 -17.67392 -16.76058 -16.19233 -15.93412 -15.46461 -15.12009 -14.80414 -14.56114 -14.30952 -14.03455 -13.73614 -13.61882 -13.30518 -13.17863 -13.00040 -12.72610 -12.69511 -12.45145 -12.29594 -12.21134 -12.04846 -11.85862 -11.50200 -11.36817 -11.19522 -10.64827 -10.54200 -9.11187 -8.17782 -6.26347 -0.43600 -0.26853 0.66441 0.78172 1.02263 1.42251 1.46062 1.52243 1.55447 1.87636 1.92323 2.43803 3.04362 3.13050 3.19742 3.63778 3.67294 3.77233 4.02490 4.07798 4.13574 4.28731 4.48745 4.51902 4.69422 4.84571 4.87017 4.97120 5.48769 5.50434 5.57362 5.58603 5.79955 6.17271 6.68379 6.88221 7.22803 7.42767 8.93190 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.030267 B = 0.003641 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.879684 B = 7688.741923 C = 8334.967085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.212 4.212 3 C 0.140 3.860 4 N -0.350 5.350 5 N -0.091 5.091 6 N -0.059 5.059 7 N -0.356 5.356 8 C 0.212 3.788 9 S 0.074 5.926 10 C -0.101 4.101 11 C 0.036 3.964 12 H 0.142 0.858 13 C 0.242 3.758 14 N -0.483 5.483 15 C 0.040 3.960 16 C -0.537 4.537 17 H 0.061 0.939 18 C 0.012 3.988 19 N -0.923 5.923 20 Si 0.948 3.052 21 H -0.265 1.265 22 H -0.275 1.275 23 H -0.288 1.288 24 H 0.123 0.877 25 H 0.117 0.883 26 H 0.107 0.893 27 H 0.137 0.863 28 H 0.135 0.865 29 H 0.100 0.900 30 H 0.134 0.866 31 H 0.006 0.994 32 H 0.043 0.957 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.417 7.692 -4.844 22.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.231 4.231 3 C 0.021 3.979 4 N -0.150 5.150 5 N -0.079 5.079 6 N -0.055 5.055 7 N -0.213 5.213 8 C -0.173 4.173 9 S 0.301 5.699 10 C -0.251 4.251 11 C 0.012 3.988 12 H 0.159 0.841 13 C -0.075 4.075 14 N -0.160 5.160 15 C 0.000 4.000 16 C -0.576 4.576 17 H 0.079 0.921 18 C -0.187 4.187 19 N -0.563 5.563 20 Si 0.774 3.226 21 H -0.189 1.189 22 H -0.201 1.201 23 H -0.214 1.214 24 H 0.141 0.859 25 H 0.135 0.865 26 H 0.126 0.874 27 H 0.154 0.846 28 H 0.153 0.847 29 H 0.119 0.881 30 H 0.152 0.848 31 H 0.024 0.976 32 H 0.061 0.939 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.371 6.406 -4.963 22.856 hybrid contribution 1.423 -0.212 0.303 1.470 sum -19.948 6.194 -4.660 21.401 Atomic orbital electron populations 1.24276 0.94847 1.04222 0.93403 1.22981 0.97115 0.97101 1.05940 1.21633 0.92091 0.99545 0.84612 1.51939 1.09038 1.42730 1.11305 1.82335 1.18369 1.19726 0.87453 1.77843 0.94932 1.09672 1.23059 1.74919 1.25372 1.21005 1.00007 1.28033 0.88577 1.00143 1.00542 1.85737 1.07945 1.71953 1.04294 1.23879 0.92523 1.07565 1.01116 1.18909 0.94897 0.84920 1.00060 0.84072 1.29285 0.91081 0.95123 0.91978 1.80990 1.11949 1.12474 1.10547 1.19047 0.87373 0.98331 0.95213 1.21557 0.94152 1.44384 0.97491 0.92068 1.25703 1.00394 0.95703 0.96930 1.70046 1.17160 1.49693 1.19382 0.85644 0.79322 0.77831 0.79776 1.18941 1.20094 1.21444 0.85925 0.86509 0.87446 0.84556 0.84715 0.88142 0.84754 0.97572 0.93900 0.92743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.14 14.32 67.78 0.97 -0.17 16 2 C -0.21 -2.68 9.85 25.65 0.25 -2.43 16 3 C 0.14 1.74 6.81 85.63 0.58 2.32 16 4 N -0.35 -7.70 3.67 -351.58 -1.29 -8.99 16 5 N -0.09 -2.52 13.93 37.02 0.52 -2.01 16 6 N -0.06 -1.91 13.38 37.02 0.50 -1.41 16 7 N -0.36 -11.08 11.57 -57.41 -0.66 -11.74 16 8 C 0.21 5.34 8.15 179.84 1.47 6.80 16 9 S 0.07 1.58 21.19 -56.49 -1.20 0.39 16 10 C -0.10 -2.63 4.65 71.98 0.33 -2.30 16 11 C 0.04 1.12 2.21 -12.60 -0.03 1.09 16 12 H 0.14 3.75 8.14 -2.38 -0.02 3.73 16 13 C 0.24 8.77 13.30 89.46 1.19 9.96 16 14 N -0.48 -19.28 18.53 19.99 0.37 -18.91 16 15 C 0.04 1.73 4.42 29.85 0.13 1.87 16 16 C -0.54 -26.75 8.60 25.60 0.22 -26.53 16 17 H 0.06 2.96 7.59 -2.91 -0.02 2.94 16 18 C 0.01 0.63 5.46 84.66 0.46 1.09 16 19 N -0.92 -51.67 13.29 21.45 0.28 -51.38 16 20 Si 0.95 41.86 29.54 68.60 2.03 43.89 16 21 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 22 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 23 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 24 H 0.12 0.61 7.84 -2.91 -0.02 0.59 16 25 H 0.12 0.85 8.06 -2.91 -0.02 0.83 16 26 H 0.11 1.67 8.06 -2.91 -0.02 1.64 16 27 H 0.14 1.06 7.79 -2.39 -0.02 1.04 16 28 H 0.14 1.14 7.85 -2.39 -0.02 1.12 16 29 H 0.10 2.83 8.14 -2.40 -0.02 2.81 16 30 H 0.13 3.25 8.14 -2.39 -0.02 3.23 16 31 H 0.01 0.28 8.14 -2.38 -0.02 0.26 16 32 H 0.04 1.86 8.14 -2.39 -0.02 1.85 16 33 H 0.26 14.06 8.31 -92.70 -0.77 13.29 16 Total: -1.00 -66.21 320.39 7.25 -58.96 By element: Atomic # 1 Polarization: -1.62 SS G_CDS: 1.12 Total: -0.50 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: 5.58 Total: -8.29 kcal Atomic # 7 Polarization: -94.16 SS G_CDS: -0.29 Total: -94.45 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -1.20 Total: 0.39 kcal Total: -66.21 7.25 -58.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133158992.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.150 kcal (2) G-P(sol) polarization free energy of solvation -66.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds