Wall clock time and date at job start Tue Mar 31 2020 00:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45210 * 1 3 3 C 1.34633 * 116.99858 * 2 1 4 4 O 1.21504 * 120.00054 * 359.97438 * 3 2 1 5 5 N 1.34777 * 119.99925 * 179.97438 * 3 2 1 6 6 C 1.46500 * 119.99860 * 0.02562 * 5 3 2 7 7 C 1.39262 * 120.00103 * 179.97438 * 5 3 2 8 8 C 1.38832 * 120.17265 * 270.00368 * 7 5 3 9 9 C 1.38029 * 120.07603 * 180.02562 * 8 7 5 10 10 C 1.38588 * 120.42690 * 359.95368 * 9 8 7 11 11 C 1.37765 * 120.34105 * 0.02562 * 10 9 8 12 12 C 1.39784 * 119.91234 * 0.02562 * 11 10 9 13 13 C 1.47317 * 120.21189 * 179.97438 * 12 11 10 14 14 O 1.21544 * 120.00393 * 179.97438 * 13 12 11 15 15 O 1.34780 * 119.99680 * 359.97438 * 13 12 11 16 16 C 1.34861 * 117.00232 * 180.02562 * 15 13 12 17 17 H 1.08000 * 119.99649 * 359.97438 * 16 15 13 18 18 C 1.38798 * 120.00376 * 180.02562 * 16 15 13 19 19 N 1.31429 * 119.99577 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00057 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47271 * 59.99201 * 20 18 16 22 22 H 1.48500 * 109.47161 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47172 * 299.99420 * 20 18 16 24 24 H 1.09004 * 109.47051 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47357 * 300.00163 * 1 2 3 26 26 H 1.09005 * 109.46616 * 60.00262 * 1 2 3 27 27 H 1.08995 * 109.47381 * 269.99914 * 6 5 3 28 28 H 1.09000 * 109.47010 * 29.99964 * 6 5 3 29 29 H 1.09004 * 109.47175 * 149.99544 * 6 5 3 30 30 H 1.08000 * 119.96176 * 359.97438 * 8 7 5 31 31 H 1.08002 * 119.78703 * 179.97438 * 9 8 7 32 32 H 1.08000 * 119.83097 * 180.02562 * 10 9 8 33 33 H 1.07995 * 120.04279 * 179.72146 * 11 10 9 34 34 H 0.96993 * 119.99432 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2186 -0.0005 5 7 3.4092 1.2702 0.0005 6 6 4.2071 0.0415 0.0005 7 6 4.0415 2.5110 0.0000 8 6 4.3587 3.1320 -1.2005 9 6 4.9858 4.3616 -1.1987 10 6 5.3027 4.9861 -0.0028 11 6 4.9955 4.3858 1.1985 12 6 4.3614 3.1401 1.2133 13 6 4.0304 2.4920 2.4942 14 8 3.4786 1.4090 2.5026 15 8 4.3395 3.0999 3.6567 16 6 4.0096 2.4525 4.7928 17 1 3.5198 1.4912 4.7438 18 6 4.2985 3.0220 6.0251 19 7 4.8941 4.1921 6.0848 20 14 3.8409 2.1256 7.5987 21 1 4.5327 0.8122 7.6393 22 1 4.2547 2.9391 8.7701 23 1 2.3718 1.9126 7.6377 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 4.4046 -0.2635 1.0281 28 1 3.6587 -0.7478 -0.5137 29 1 5.1516 0.2216 -0.5130 30 1 4.1152 2.6520 -2.1369 31 1 5.2308 4.8403 -2.1353 32 1 5.7930 5.9483 -0.0126 33 1 5.2487 4.8747 2.1276 34 1 5.0964 4.5899 6.9459 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000140008466.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:00 Heat of formation + Delta-G solvation = -108.687878 kcal Electronic energy + Delta-G solvation = -22070.072563 eV Core-core repulsion = 18548.763494 eV Total energy + Delta-G solvation = -3521.309069 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.61381 -39.28101 -38.16718 -36.32873 -35.35197 -34.84227 -32.22899 -30.96004 -30.06879 -27.55056 -26.35046 -25.56518 -23.50624 -22.76689 -20.83276 -19.81229 -17.93784 -17.74482 -17.32703 -16.91194 -16.31931 -15.68794 -15.16934 -14.86177 -14.48835 -14.28459 -14.21205 -13.71703 -13.61229 -13.34538 -12.59051 -12.50332 -12.33982 -12.17692 -11.85142 -11.73151 -11.48514 -11.22077 -11.16334 -10.50630 -10.49315 -10.43387 -10.22072 -9.86996 -9.13895 -8.70478 -8.64499 -8.57979 -8.50552 -6.47976 -4.09722 1.12277 1.49973 2.44225 3.13025 3.15995 3.20056 3.21578 3.48009 3.89437 4.15179 4.32999 4.51329 5.08692 5.12998 5.20868 5.26752 5.29984 5.37887 5.43735 5.62793 5.64722 5.72934 5.79329 6.06206 6.14818 6.38365 6.41393 6.47719 6.66523 6.81902 6.96158 7.20296 7.35354 7.55875 7.90308 8.63946 8.69176 9.00689 9.81652 10.69737 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.015817 B = 0.006566 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.791575 B = 4263.593248 C = 5546.056064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 O -0.366 6.366 3 C 0.668 3.332 4 O -0.568 6.568 5 N -0.539 5.539 6 C 0.092 3.908 7 C 0.191 3.809 8 C -0.120 4.120 9 C -0.102 4.102 10 C -0.123 4.123 11 C -0.068 4.068 12 C -0.079 4.079 13 C 0.431 3.569 14 O -0.543 6.543 15 O -0.205 6.205 16 C -0.371 4.371 17 H 0.096 0.904 18 C 0.041 3.959 19 N -0.859 5.859 20 Si 0.946 3.054 21 H -0.269 1.269 22 H -0.278 1.278 23 H -0.269 1.269 24 H 0.099 0.901 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.129 0.871 33 H 0.146 0.854 34 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.317 -3.959 -13.587 14.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.280 6.280 3 C 0.423 3.577 4 O -0.456 6.456 5 N -0.274 5.274 6 C -0.050 4.050 7 C 0.101 3.899 8 C -0.139 4.139 9 C -0.121 4.121 10 C -0.141 4.141 11 C -0.087 4.087 12 C -0.082 4.082 13 C 0.279 3.721 14 O -0.441 6.441 15 O -0.112 6.112 16 C -0.447 4.447 17 H 0.114 0.886 18 C -0.163 4.163 19 N -0.495 5.495 20 Si 0.770 3.230 21 H -0.194 1.194 22 H -0.203 1.203 23 H -0.194 1.194 24 H 0.117 0.883 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.145 0.855 31 H 0.145 0.855 32 H 0.147 0.853 33 H 0.164 0.836 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.669 -3.838 -13.379 13.934 hybrid contribution -0.354 -0.356 0.905 1.035 sum -1.022 -4.194 -12.474 13.200 Atomic orbital electron populations 1.23136 0.74987 1.03021 1.02571 1.86205 1.23644 1.31001 1.87121 1.17717 0.82571 0.81973 0.75434 1.90975 1.64103 1.35005 1.55549 1.43192 1.02297 1.05842 1.76115 1.21793 0.94985 0.84724 1.03460 1.17068 0.95952 0.85212 0.91706 1.21133 1.00248 0.95955 0.96583 1.21088 0.98210 0.94495 0.98341 1.21185 1.00618 1.00292 0.92039 1.21591 0.94561 0.93075 0.99461 1.19802 1.01168 0.95656 0.91531 1.20512 0.81556 0.85028 0.84972 1.90615 1.43344 1.22231 1.87898 1.83898 1.67560 1.46803 1.12910 1.21239 1.39034 1.04095 0.80357 0.88607 1.25372 0.96189 0.96146 0.98639 1.69968 1.37682 1.15345 1.26510 0.85707 0.79310 0.78887 0.79095 1.19401 1.20255 1.19428 0.88252 0.91813 0.92257 0.91056 0.90556 0.91378 0.85541 0.85461 0.85264 0.83594 0.91844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.77 10.56 101.05 1.07 1.84 16 2 O -0.37 -6.38 9.39 -40.31 -0.38 -6.76 16 3 C 0.67 13.66 7.45 54.06 0.40 14.06 16 4 O -0.57 -13.22 16.10 -19.28 -0.31 -13.53 16 5 N -0.54 -10.25 1.51 -126.05 -0.19 -10.44 16 6 C 0.09 1.40 10.08 59.85 0.60 2.01 16 7 C 0.19 3.65 4.45 -83.46 -0.37 3.28 16 8 C -0.12 -1.80 9.96 -39.44 -0.39 -2.20 16 9 C -0.10 -1.34 10.03 -39.53 -0.40 -1.73 16 10 C -0.12 -1.77 10.02 -39.63 -0.40 -2.16 16 11 C -0.07 -1.27 9.61 -39.18 -0.38 -1.64 16 12 C -0.08 -1.71 5.89 -104.83 -0.62 -2.33 16 13 C 0.43 11.40 7.83 34.42 0.27 11.67 16 14 O -0.54 -14.93 12.36 -19.30 -0.24 -15.17 16 15 O -0.20 -6.00 8.99 -21.79 -0.20 -6.19 16 16 C -0.37 -11.10 9.65 30.94 0.30 -10.80 16 17 H 0.10 2.88 6.86 -52.49 -0.36 2.52 16 18 C 0.04 1.16 5.49 -17.52 -0.10 1.07 16 19 N -0.86 -24.96 13.67 55.49 0.76 -24.20 16 20 Si 0.95 21.36 29.55 -169.99 -5.02 16.34 16 21 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 22 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 23 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 24 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 1.25 7.18 -51.93 -0.37 0.88 16 28 H 0.08 0.98 7.37 -51.93 -0.38 0.60 16 29 H 0.07 0.85 8.05 -51.93 -0.42 0.43 16 30 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 31 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 32 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16 33 H 0.15 2.85 7.61 -52.49 -0.40 2.45 16 34 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 307.88 15.07 4.64 4.64 Total: -1.00 -36.33 307.88 -4.55 -40.87 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -3.60 Total: 1.36 kcal Atomic # 6 Polarization: 13.07 SS G_CDS: -0.01 Total: 13.06 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: 0.57 Total: -34.64 kcal Atomic # 8 Polarization: -40.52 SS G_CDS: -1.12 Total: -41.64 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -36.33 -4.55 -40.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000140008466.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.813 kcal (2) G-P(sol) polarization free energy of solvation -36.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds