Wall clock time and date at job start Tue Mar 31 2020 00:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45210 * 1 3 3 C 1.34633 * 116.99858 * 2 1 4 4 O 1.21504 * 120.00054 * 359.97438 * 3 2 1 5 5 N 1.34777 * 119.99925 * 179.97438 * 3 2 1 6 6 C 1.46500 * 119.99860 * 0.02562 * 5 3 2 7 7 C 1.39262 * 120.00103 * 179.97438 * 5 3 2 8 8 C 1.38832 * 120.17265 * 270.00368 * 7 5 3 9 9 C 1.38029 * 120.07603 * 180.02562 * 8 7 5 10 10 C 1.38588 * 120.42690 * 359.95368 * 9 8 7 11 11 C 1.37765 * 120.34105 * 0.02562 * 10 9 8 12 12 C 1.39784 * 119.91234 * 0.02562 * 11 10 9 13 13 C 1.47317 * 120.21189 * 179.97438 * 12 11 10 14 14 O 1.21544 * 120.00393 * 179.97438 * 13 12 11 15 15 O 1.34780 * 119.99680 * 359.97438 * 13 12 11 16 16 C 1.34861 * 117.00232 * 180.02562 * 15 13 12 17 17 H 1.08000 * 119.99649 * 359.97438 * 16 15 13 18 18 C 1.38798 * 120.00376 * 180.02562 * 16 15 13 19 19 N 1.31429 * 119.99577 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00057 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47271 * 59.99201 * 20 18 16 22 22 H 1.48500 * 109.47161 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47172 * 299.99420 * 20 18 16 24 24 H 1.09004 * 109.47051 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47357 * 300.00163 * 1 2 3 26 26 H 1.09005 * 109.46616 * 60.00262 * 1 2 3 27 27 H 1.08995 * 109.47381 * 269.99914 * 6 5 3 28 28 H 1.09000 * 109.47010 * 29.99964 * 6 5 3 29 29 H 1.09004 * 109.47175 * 149.99544 * 6 5 3 30 30 H 1.08000 * 119.96176 * 359.97438 * 8 7 5 31 31 H 1.08002 * 119.78703 * 179.97438 * 9 8 7 32 32 H 1.08000 * 119.83097 * 180.02562 * 10 9 8 33 33 H 1.07995 * 120.04279 * 179.72146 * 11 10 9 34 34 H 0.96993 * 119.99432 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2186 -0.0005 5 7 3.4092 1.2702 0.0005 6 6 4.2071 0.0415 0.0005 7 6 4.0415 2.5110 0.0000 8 6 4.3587 3.1320 -1.2005 9 6 4.9858 4.3616 -1.1987 10 6 5.3027 4.9861 -0.0028 11 6 4.9955 4.3858 1.1985 12 6 4.3614 3.1401 1.2133 13 6 4.0304 2.4920 2.4942 14 8 3.4786 1.4090 2.5026 15 8 4.3395 3.0999 3.6567 16 6 4.0096 2.4525 4.7928 17 1 3.5198 1.4912 4.7438 18 6 4.2985 3.0220 6.0251 19 7 4.8941 4.1921 6.0848 20 14 3.8409 2.1256 7.5987 21 1 4.5327 0.8122 7.6393 22 1 4.2547 2.9391 8.7701 23 1 2.3718 1.9126 7.6377 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 4.4046 -0.2635 1.0281 28 1 3.6587 -0.7478 -0.5137 29 1 5.1516 0.2216 -0.5130 30 1 4.1152 2.6520 -2.1369 31 1 5.2308 4.8403 -2.1353 32 1 5.7930 5.9483 -0.0126 33 1 5.2487 4.8747 2.1276 34 1 5.0964 4.5899 6.9459 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000140008466.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:59 Heat of formation + Delta-G solvation = -132.703788 kcal Electronic energy + Delta-G solvation = -22071.113971 eV Core-core repulsion = 18548.763494 eV Total energy + Delta-G solvation = -3522.350477 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.11870 -41.03210 -39.82505 -37.72321 -37.20686 -36.58349 -34.37574 -32.39330 -31.38069 -28.74603 -27.89314 -27.40143 -25.13157 -24.10990 -22.50394 -21.32327 -19.92282 -19.37357 -18.94856 -18.51155 -17.75080 -17.29845 -16.72852 -16.56215 -16.44616 -15.98170 -15.64248 -15.09441 -14.97392 -14.69606 -14.34805 -13.91510 -13.70628 -13.67133 -13.40504 -13.09378 -13.02840 -12.88037 -12.46533 -12.39990 -12.19998 -12.07338 -11.85274 -11.78634 -11.13267 -10.75415 -10.04854 -10.02843 -9.92411 -8.60797 -6.37692 -0.31766 0.20082 1.08643 1.28930 1.34808 1.45362 1.68989 1.79647 2.05736 2.63198 2.71353 2.92790 3.01448 3.83533 4.07371 4.09221 4.22205 4.28163 4.30218 4.36355 4.42752 4.56648 4.60476 4.65691 4.85411 4.93322 5.08585 5.10541 5.24215 5.35393 5.43249 5.50518 5.76268 5.90005 6.11331 6.56851 6.83296 7.14359 7.68898 8.59856 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.015817 B = 0.006566 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.791575 B = 4263.593248 C = 5546.056064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 O -0.367 6.367 3 C 0.658 3.342 4 O -0.607 6.607 5 N -0.543 5.543 6 C 0.091 3.909 7 C 0.175 3.825 8 C -0.114 4.114 9 C -0.069 4.069 10 C -0.110 4.110 11 C -0.080 4.080 12 C -0.129 4.129 13 C 0.429 3.571 14 O -0.564 6.564 15 O -0.235 6.235 16 C -0.419 4.419 17 H 0.079 0.921 18 C -0.002 4.002 19 N -0.897 5.897 20 Si 1.019 2.981 21 H -0.259 1.259 22 H -0.255 1.255 23 H -0.265 1.265 24 H 0.144 0.856 25 H 0.042 0.958 26 H 0.071 0.929 27 H 0.038 0.962 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.160 0.840 31 H 0.186 0.814 32 H 0.171 0.829 33 H 0.122 0.878 34 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.250 -3.766 -16.038 16.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.281 6.281 3 C 0.414 3.586 4 O -0.498 6.498 5 N -0.277 5.277 6 C -0.049 4.049 7 C 0.085 3.915 8 C -0.133 4.133 9 C -0.087 4.087 10 C -0.128 4.128 11 C -0.099 4.099 12 C -0.132 4.132 13 C 0.278 3.722 14 O -0.462 6.462 15 O -0.143 6.143 16 C -0.495 4.495 17 H 0.097 0.903 18 C -0.203 4.203 19 N -0.534 5.534 20 Si 0.837 3.163 21 H -0.183 1.183 22 H -0.178 1.178 23 H -0.190 1.190 24 H 0.162 0.838 25 H 0.061 0.939 26 H 0.090 0.910 27 H 0.057 0.943 28 H 0.119 0.881 29 H 0.117 0.883 30 H 0.178 0.822 31 H 0.203 0.797 32 H 0.188 0.812 33 H 0.140 0.860 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.081 -3.662 -15.858 16.276 hybrid contribution -0.530 -0.390 1.406 1.552 sum -0.612 -4.053 -14.453 15.023 Atomic orbital electron populations 1.23515 0.72896 1.05814 1.02180 1.86214 1.25713 1.29482 1.86660 1.18053 0.83132 0.82260 0.75105 1.90925 1.65095 1.36351 1.57473 1.43471 1.02173 1.06941 1.75153 1.21939 0.96495 0.84309 1.02181 1.17499 0.96232 0.85627 0.92169 1.21567 0.99250 0.96496 0.95977 1.21763 0.94163 0.92840 0.99920 1.21620 0.99212 1.01387 0.90551 1.21557 0.95237 0.92360 1.00778 1.19795 1.05634 0.97822 0.89908 1.21615 0.79760 0.84805 0.85990 1.90560 1.43960 1.23240 1.88470 1.83924 1.69017 1.47665 1.13709 1.21402 1.41782 1.04562 0.81729 0.90335 1.26570 0.95161 0.96918 1.01642 1.70049 1.38484 1.16769 1.28053 0.84685 0.79132 0.78070 0.74434 1.18347 1.17826 1.18982 0.83835 0.93876 0.91028 0.94336 0.88055 0.88256 0.82235 0.79720 0.81172 0.86003 0.90942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.30 10.56 113.37 1.20 2.49 16 2 O -0.37 -12.77 9.39 -55.42 -0.52 -13.29 16 3 C 0.66 27.28 7.45 129.79 0.97 28.25 16 4 O -0.61 -28.88 16.10 19.83 0.32 -28.56 16 5 N -0.54 -20.62 1.51 -783.14 -1.19 -21.81 16 6 C 0.09 2.76 10.08 127.77 1.29 4.05 16 7 C 0.18 6.58 4.45 38.62 0.17 6.76 16 8 C -0.11 -3.00 9.96 22.36 0.22 -2.78 16 9 C -0.07 -1.41 10.03 22.30 0.22 -1.19 16 10 C -0.11 -2.77 10.02 22.24 0.22 -2.55 16 11 C -0.08 -3.03 9.61 22.53 0.22 -2.82 16 12 C -0.13 -5.80 5.89 -20.00 -0.12 -5.91 16 13 C 0.43 24.30 7.83 70.21 0.55 24.85 16 14 O -0.56 -33.19 12.36 19.69 0.24 -32.95 16 15 O -0.23 -14.83 8.99 10.78 0.10 -14.73 16 16 C -0.42 -26.75 9.65 67.95 0.66 -26.10 16 17 H 0.08 5.09 6.86 -2.91 -0.02 5.07 16 18 C 0.00 -0.12 5.49 84.89 0.47 0.34 16 19 N -0.90 -54.08 13.67 21.63 0.30 -53.79 16 20 Si 1.02 44.78 29.55 68.60 2.03 46.81 16 21 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 22 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16 23 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 24 H 0.14 2.40 8.14 -2.38 -0.02 2.38 16 25 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 27 H 0.04 1.41 7.18 -2.39 -0.02 1.39 16 28 H 0.10 2.49 7.37 -2.39 -0.02 2.47 16 29 H 0.10 2.32 8.05 -2.38 -0.02 2.30 16 30 H 0.16 3.18 8.06 -2.91 -0.02 3.16 16 31 H 0.19 1.88 8.06 -2.91 -0.02 1.86 16 32 H 0.17 2.92 8.06 -2.91 -0.02 2.89 16 33 H 0.12 5.09 7.61 -2.91 -0.02 5.07 16 34 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -87.65 307.88 8.47 -79.18 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 1.13 Total: 13.74 kcal Atomic # 6 Polarization: 19.33 SS G_CDS: 6.06 Total: 25.39 kcal Atomic # 7 Polarization: -74.70 SS G_CDS: -0.89 Total: -75.59 kcal Atomic # 8 Polarization: -89.67 SS G_CDS: 0.14 Total: -89.53 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -87.65 8.47 -79.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000140008466.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.523 kcal (2) G-P(sol) polarization free energy of solvation -87.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds