Wall clock time and date at job start Tue Mar 31 2020 00:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00149 * 2 1 4 4 C 1.53003 * 109.47215 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.46892 * 64.99708 * 4 3 2 6 6 C 1.52999 * 109.47273 * 305.00300 * 4 3 2 7 7 S 1.81394 * 109.47224 * 185.00201 * 4 3 2 8 8 O 1.42097 * 110.54591 * 68.37655 * 7 4 3 9 9 O 1.42106 * 110.54176 * 291.62529 * 7 4 3 10 10 N 1.65608 * 104.44909 * 180.02562 * 7 4 3 11 11 C 1.47585 * 134.48972 * 89.99977 * 10 7 4 12 12 C 1.53946 * 86.11303 * 155.35854 * 11 10 7 13 13 O 1.42897 * 113.74194 * 269.15036 * 12 11 10 14 14 C 1.50705 * 113.74193 * 137.95267 * 12 11 10 15 15 H 1.08000 * 119.99753 * 17.18899 * 14 12 11 16 16 C 1.37873 * 119.99893 * 197.19270 * 14 12 11 17 17 N 1.31513 * 119.99896 * 194.35422 * 16 14 12 18 18 Si 1.86797 * 120.00211 * 14.35029 * 16 14 12 19 19 H 1.48498 * 109.46923 * 180.02562 * 18 16 14 20 20 H 1.48497 * 109.47361 * 300.00177 * 18 16 14 21 21 H 1.48501 * 109.47273 * 60.00378 * 18 16 14 22 22 C 1.47807 * 134.45879 * 269.86780 * 10 7 4 23 23 H 1.09000 * 109.47550 * 59.99562 * 1 2 3 24 24 H 1.09004 * 109.47341 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46736 * 299.99693 * 1 2 3 26 26 H 1.08998 * 109.47222 * 60.00539 * 3 2 1 27 27 H 1.08997 * 109.47570 * 300.00410 * 3 2 1 28 28 H 1.09008 * 109.47156 * 59.99969 * 6 4 3 29 29 H 1.08998 * 109.47131 * 179.97438 * 6 4 3 30 30 H 1.08996 * 109.46941 * 300.00202 * 6 4 3 31 31 H 1.08992 * 113.77064 * 41.05655 * 11 10 7 32 32 H 1.09002 * 113.86851 * 269.67158 * 11 10 7 33 33 H 0.96694 * 114.00247 * 174.14979 * 13 12 11 34 34 H 0.97009 * 119.99986 * 354.85954 * 17 16 14 35 35 H 1.08994 * 113.77033 * 90.37447 * 22 10 7 36 36 H 1.09004 * 113.83092 * 318.91797 * 22 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8637 0.7227 -0.9305 6 6 3.9781 0.3197 1.1825 7 16 4.2727 2.8352 0.1498 8 8 4.0184 3.3805 1.4370 9 8 4.0364 3.5951 -1.0276 10 7 5.9059 2.5610 0.1371 11 6 6.9331 2.4812 -0.9196 12 6 7.9419 2.8660 0.1777 13 8 8.1492 4.2746 0.3004 14 6 9.2298 2.0857 0.1186 15 1 9.4960 1.5503 -0.7808 16 6 10.0683 2.0552 1.2127 17 7 11.3038 1.6239 1.0824 18 14 9.4493 2.6266 2.8799 19 1 10.5365 2.4955 3.8829 20 1 9.0273 4.0475 2.7909 21 1 8.2924 1.7914 3.2913 22 6 6.9200 2.3003 1.1804 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.6887 1.8463 0.8900 27 1 1.6886 1.8464 -0.8899 28 1 3.5351 -0.6723 1.0929 29 1 5.0646 0.2332 1.1827 30 1 3.6498 0.7814 2.1137 31 1 6.8218 3.2357 -1.6982 32 1 7.0790 1.4772 -1.3180 33 1 8.7123 4.5259 1.0452 34 1 11.6030 1.2578 0.2354 35 1 7.0608 1.2423 1.4015 36 1 6.7982 2.9106 2.0753 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192893774.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:19 Heat of formation + Delta-G solvation = -150.820311 kcal Electronic energy + Delta-G solvation = -21076.348718 eV Core-core repulsion = 17688.656601 eV Total energy + Delta-G solvation = -3387.692117 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.102 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.50758 -39.22197 -38.31348 -37.16038 -35.96273 -34.90749 -34.59481 -29.79030 -28.45399 -27.33782 -26.85727 -25.97339 -23.29769 -21.46411 -19.93648 -19.80266 -18.81407 -18.12431 -17.53862 -17.29217 -17.07998 -16.80568 -16.15266 -16.04432 -15.40106 -15.15359 -14.95574 -14.71471 -14.26432 -13.92081 -13.83497 -13.63781 -13.37617 -13.30777 -13.23057 -12.83254 -12.70317 -12.55527 -12.39670 -12.20390 -12.05749 -11.66719 -11.61252 -11.14575 -10.87708 -10.80156 -10.38213 -9.88994 -8.76278 -6.52116 -0.96516 1.39702 1.45845 1.52425 1.70381 2.43730 2.49185 2.84450 2.94770 2.97375 3.32978 3.43583 3.48724 3.90336 3.97171 4.12840 4.20362 4.24974 4.48165 4.49404 4.50619 4.54281 4.68995 4.74049 4.75549 4.81873 4.88868 5.03013 5.17482 5.56594 5.74655 5.98275 6.00048 6.48654 7.01663 7.31770 8.58552 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.029954 B = 0.005396 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.546428 B = 5187.793671 C = 5421.358037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.394 6.394 3 C 0.070 3.930 4 C -0.582 4.582 5 H 0.157 0.843 6 C -0.135 4.135 7 S 2.631 3.369 8 O -0.976 6.976 9 O -0.984 6.984 10 N -1.026 6.026 11 C 0.148 3.852 12 C 0.185 3.815 13 O -0.576 6.576 14 C -0.615 4.615 15 H 0.040 0.960 16 C -0.004 4.004 17 N -0.924 5.924 18 Si 1.060 2.940 19 H -0.288 1.288 20 H -0.253 1.253 21 H -0.236 1.236 22 C 0.086 3.914 23 H 0.054 0.946 24 H 0.105 0.895 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.111 0.889 33 H 0.371 0.629 34 H 0.259 0.741 35 H 0.109 0.891 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.901 -4.013 0.614 19.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.313 6.313 3 C -0.008 4.008 4 C -0.693 4.693 5 H 0.175 0.825 6 C -0.193 4.193 7 S 2.729 3.271 8 O -0.967 6.967 9 O -0.974 6.974 10 N -0.865 5.865 11 C 0.023 3.977 12 C 0.142 3.858 13 O -0.385 6.385 14 C -0.653 4.653 15 H 0.059 0.941 16 C -0.205 4.205 17 N -0.559 5.559 18 Si 0.881 3.119 19 H -0.214 1.214 20 H -0.178 1.178 21 H -0.160 1.160 22 C -0.039 4.039 23 H 0.073 0.927 24 H 0.123 0.877 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.112 0.888 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.129 0.871 33 H 0.221 0.779 34 H 0.069 0.931 35 H 0.127 0.873 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.398 -3.024 1.691 19.705 hybrid contribution 0.233 -0.845 -1.605 1.829 sum -19.165 -3.869 0.086 19.552 Atomic orbital electron populations 1.23080 0.78986 1.04522 1.01351 1.87882 1.21708 1.26091 1.95618 1.22230 0.89006 0.87097 1.02492 1.30590 1.05455 1.22550 1.10686 0.82485 1.21552 1.02457 1.01209 0.94121 1.04400 0.72249 0.77362 0.73100 1.93515 1.84179 1.77012 1.42005 1.93524 1.84549 1.68629 1.50738 1.59956 1.20926 1.87630 1.17962 1.22867 0.81895 1.01913 0.91037 1.20571 0.91822 0.79687 0.93691 1.86350 1.72880 1.24561 1.54737 1.22369 1.06979 1.34510 1.01485 0.94121 1.27066 0.92621 0.94463 1.06368 1.70951 1.16073 1.39571 1.29256 0.83971 0.76931 0.78805 0.72215 1.21432 1.17817 1.15971 1.24139 0.85164 1.02294 0.92345 0.92740 0.87706 0.92788 0.91175 0.90599 0.88756 0.90729 0.90978 0.90670 0.87096 0.77853 0.93140 0.87320 0.90616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 11.01 113.37 1.25 1.47 16 2 O -0.39 -8.10 9.82 -148.98 -1.46 -9.56 16 3 C 0.07 1.48 5.44 71.98 0.39 1.87 16 4 C -0.58 -13.62 3.36 30.59 0.10 -13.52 16 5 H 0.16 3.20 8.14 -2.39 -0.02 3.18 16 6 C -0.14 -3.02 8.87 71.98 0.64 -2.38 16 7 S 2.63 84.60 5.37 -56.49 -0.30 84.29 16 8 O -0.98 -35.86 17.91 -127.65 -2.29 -38.14 16 9 O -0.98 -36.75 18.02 -127.65 -2.30 -39.05 16 10 N -1.03 -36.38 3.69 -532.76 -1.97 -38.35 16 11 C 0.15 5.57 8.31 86.49 0.72 6.29 16 12 C 0.19 8.14 1.07 -10.88 -0.01 8.12 16 13 O -0.58 -26.44 13.47 -148.98 -2.01 -28.44 16 14 C -0.61 -31.29 9.04 25.60 0.23 -31.06 16 15 H 0.04 2.25 8.06 -2.91 -0.02 2.23 16 16 C 0.00 -0.20 5.44 84.65 0.46 0.26 16 17 N -0.92 -53.05 13.70 21.45 0.29 -52.76 16 18 Si 1.06 43.48 24.55 68.60 1.68 45.16 16 19 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 20 H -0.25 -9.30 5.81 99.48 0.58 -8.73 16 21 H -0.24 -8.33 6.48 99.48 0.64 -7.68 16 22 C 0.09 3.24 5.28 86.44 0.46 3.70 16 23 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 24 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 25 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 26 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.09 1.92 7.56 -2.38 -0.02 1.90 16 29 H 0.07 1.66 7.00 -2.39 -0.02 1.64 16 30 H 0.07 1.58 8.11 -2.39 -0.02 1.56 16 31 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 32 H 0.11 3.64 8.09 -2.39 -0.02 3.62 16 33 H 0.37 15.73 6.07 -74.06 -0.45 15.28 16 34 H 0.26 15.09 8.73 -92.70 -0.81 14.28 16 35 H 0.11 3.70 7.49 -2.39 -0.02 3.68 16 36 H 0.08 2.78 6.87 -2.38 -0.02 2.76 16 Total: -1.00 -68.47 308.69 -3.71 -72.18 By element: Atomic # 1 Polarization: 29.53 SS G_CDS: 0.40 Total: 29.93 kcal Atomic # 6 Polarization: -29.49 SS G_CDS: 4.24 Total: -25.26 kcal Atomic # 7 Polarization: -89.43 SS G_CDS: -1.67 Total: -91.11 kcal Atomic # 8 Polarization: -107.14 SS G_CDS: -8.06 Total: -115.20 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.68 Total: 45.16 kcal Atomic # 16 Polarization: 84.60 SS G_CDS: -0.30 Total: 84.29 kcal Total: -68.47 -3.71 -72.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192893774.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.644 kcal (2) G-P(sol) polarization free energy of solvation -68.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds