Wall clock time and date at job start Tue Mar 31 2020 01:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34222 * 117.00220 * 2 1 4 4 O 1.20832 * 119.99756 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00364 * 179.97438 * 3 2 1 6 6 N 1.46499 * 109.47416 * 179.97438 * 5 3 2 7 7 C 1.34780 * 119.99972 * 179.97438 * 6 5 3 8 8 O 1.21595 * 120.00051 * 359.97438 * 7 6 5 9 9 C 1.47540 * 120.00019 * 180.02562 * 7 6 5 10 10 C 1.39668 * 120.19406 * 0.02562 * 9 7 6 11 11 C 1.37826 * 119.91429 * 180.02562 * 10 9 7 12 12 C 1.38570 * 120.32908 * 0.02562 * 11 10 9 13 13 C 1.38027 * 120.39755 * 0.02562 * 12 11 10 14 14 C 1.38832 * 120.07614 * 359.95142 * 13 12 11 15 15 O 1.35518 * 120.16662 * 180.02562 * 14 13 12 16 16 C 1.34817 * 116.99515 * 354.39983 * 15 14 13 17 17 H 1.07998 * 120.00286 * 5.05380 * 16 15 14 18 18 C 1.38705 * 119.99676 * 185.05364 * 16 15 14 19 19 N 1.31516 * 119.99555 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00179 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47116 * 89.99960 * 20 18 16 22 22 H 1.48496 * 109.47169 * 210.00207 * 20 18 16 23 23 H 1.48504 * 109.47217 * 330.00210 * 20 18 16 24 24 H 1.09004 * 109.47655 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47285 * 300.00289 * 1 2 3 26 26 H 1.09000 * 109.47283 * 59.99811 * 1 2 3 27 27 H 1.09005 * 109.47268 * 59.99706 * 5 3 2 28 28 H 1.09002 * 109.46972 * 300.00201 * 5 3 2 29 29 H 0.97003 * 120.00032 * 0.02562 * 6 5 3 30 30 H 1.07997 * 120.04235 * 0.27181 * 10 9 7 31 31 H 1.08005 * 119.83485 * 179.97438 * 11 10 9 32 32 H 1.08001 * 119.80371 * 179.97438 * 12 11 10 33 33 H 1.08005 * 119.96278 * 179.97438 * 13 12 11 34 34 H 0.97006 * 119.99663 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6797 -0.0002 7 6 5.2921 2.9949 0.0007 8 8 6.1295 2.1133 0.0026 9 6 5.7105 4.4098 0.0005 10 6 4.7520 5.4257 0.0000 11 6 5.1493 6.7454 -0.0007 12 6 6.4963 7.0707 -0.0014 13 6 7.4546 6.0774 -0.0019 14 6 7.0731 4.7425 -0.0008 15 8 8.0125 3.7658 -0.0008 16 6 9.2983 4.1534 -0.1192 17 1 9.5471 5.2043 -0.1263 18 6 10.3017 3.2023 -0.2319 19 7 11.5561 3.5805 -0.3469 20 14 9.8715 1.3846 -0.2189 21 1 9.6220 0.9251 -1.6087 22 1 10.9993 0.6132 0.3626 23 1 8.6512 1.1706 0.5998 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 3.9564 0.7805 -0.8892 28 1 3.9556 0.7808 0.8908 29 1 3.3136 3.3830 -0.0005 30 1 3.7010 5.1774 0.0042 31 1 4.4070 7.5300 -0.0015 32 1 6.7981 8.1077 -0.0023 33 1 8.5026 6.3389 -0.0029 34 1 12.2579 2.9154 -0.4254 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194083050.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:29 Heat of formation + Delta-G solvation = -111.014175 kcal Electronic energy + Delta-G solvation = -21129.301389 eV Core-core repulsion = 17607.891444 eV Total energy + Delta-G solvation = -3521.409945 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.84981 -39.75240 -38.31190 -36.84933 -36.54125 -34.24343 -32.46728 -31.01099 -29.22396 -29.05549 -26.94614 -25.27633 -23.24141 -21.63465 -21.03769 -20.26198 -18.46293 -17.93159 -17.57989 -16.94469 -16.85602 -16.05733 -15.50078 -14.99502 -14.67434 -14.39447 -14.08378 -13.99510 -13.71824 -13.50453 -13.44755 -12.78598 -12.49164 -12.37416 -12.34316 -12.17823 -11.41368 -11.29418 -11.15350 -10.89592 -10.80776 -10.72883 -10.06606 -9.67617 -9.18091 -8.97686 -8.90080 -8.40433 -7.49851 -6.48429 -4.13628 1.53984 1.85123 2.18310 2.21871 3.30665 3.36808 3.48453 3.49842 3.64710 4.34021 4.42638 4.48809 4.71728 4.77893 4.85482 5.07417 5.16419 5.19818 5.20591 5.39022 5.41540 5.64902 5.92018 5.97528 6.02903 6.36418 6.48101 6.56312 6.81716 6.99332 7.13713 7.36406 7.46791 7.65011 7.82397 7.93452 8.72178 8.86905 9.49410 10.56638 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.017222 B = 0.005217 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.439047 B = 5365.708427 C = 6967.902837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.355 6.355 3 C 0.461 3.539 4 O -0.506 6.506 5 C 0.131 3.869 6 N -0.736 5.736 7 C 0.567 3.433 8 O -0.515 6.515 9 C -0.227 4.227 10 C -0.039 4.039 11 C -0.220 4.220 12 C -0.049 4.049 13 C -0.227 4.227 14 C 0.203 3.797 15 O -0.166 6.166 16 C -0.397 4.397 17 H 0.109 0.891 18 C 0.072 3.928 19 N -0.869 5.869 20 Si 0.901 3.099 21 H -0.274 1.274 22 H -0.286 1.286 23 H -0.238 1.238 24 H 0.103 0.897 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.406 0.594 30 H 0.116 0.884 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.139 0.861 34 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.727 -2.767 0.652 18.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.270 6.270 3 C 0.304 3.696 4 O -0.393 6.393 5 C 0.006 3.994 6 N -0.396 5.396 7 C 0.358 3.642 8 O -0.391 6.391 9 C -0.232 4.232 10 C -0.057 4.057 11 C -0.239 4.239 12 C -0.068 4.068 13 C -0.246 4.246 14 C 0.145 3.855 15 O -0.065 6.065 16 C -0.472 4.472 17 H 0.126 0.874 18 C -0.134 4.134 19 N -0.505 5.505 20 Si 0.726 3.274 21 H -0.199 1.199 22 H -0.212 1.212 23 H -0.161 1.161 24 H 0.121 0.879 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.129 0.871 28 H 0.129 0.871 29 H 0.244 0.756 30 H 0.134 0.866 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.157 0.843 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.084 -3.484 0.654 18.428 hybrid contribution -0.544 -0.156 -0.060 0.569 sum -18.628 -3.640 0.594 18.990 Atomic orbital electron populations 1.23312 0.75823 1.03908 1.02738 1.86497 1.23781 1.32796 1.83959 1.23749 0.92115 0.81634 0.72110 1.90662 1.66902 1.36302 1.45439 1.20535 0.85967 0.86544 1.06351 1.45719 1.08510 1.06118 1.79303 1.18177 0.80749 0.89320 0.75987 1.90874 1.50676 1.49307 1.48240 1.18712 0.91363 0.91794 1.21346 1.20820 0.97154 0.92442 0.95329 1.20555 0.95717 0.95515 1.12139 1.20985 0.92769 0.98393 0.94604 1.21285 1.01046 0.91852 1.10392 1.18988 0.87824 0.88005 0.90674 1.83771 1.15695 1.31403 1.75680 1.20936 0.78372 0.96221 1.51656 0.87403 1.24504 0.93657 1.00701 0.94539 1.69640 0.99269 1.36032 1.45521 0.86191 0.79296 0.81898 0.80064 1.19915 1.21237 1.16103 0.87860 0.91710 0.91699 0.87114 0.87113 0.75565 0.86638 0.86903 0.86751 0.84338 0.90800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.56 101.05 1.07 1.32 16 2 O -0.35 -3.58 10.56 -39.24 -0.41 -3.99 16 3 C 0.46 5.39 8.03 36.00 0.29 5.68 16 4 O -0.51 -6.84 15.42 -18.76 -0.29 -7.13 16 5 C 0.13 1.65 6.26 -5.20 -0.03 1.62 16 6 N -0.74 -11.21 5.48 -62.53 -0.34 -11.55 16 7 C 0.57 11.32 7.76 -12.47 -0.10 11.22 16 8 O -0.52 -12.35 15.17 -16.57 -0.25 -12.60 16 9 C -0.23 -4.62 5.89 -104.81 -0.62 -5.23 16 10 C -0.04 -0.63 9.54 -39.20 -0.37 -1.01 16 11 C -0.22 -3.46 10.02 -39.61 -0.40 -3.86 16 12 C -0.05 -0.83 10.03 -39.54 -0.40 -1.23 16 13 C -0.23 -4.75 9.16 -39.44 -0.36 -5.11 16 14 C 0.20 4.75 6.66 -38.60 -0.26 4.50 16 15 O -0.17 -4.50 6.67 -21.06 -0.14 -4.64 16 16 C -0.40 -11.25 9.95 30.90 0.31 -10.94 16 17 H 0.11 3.04 5.44 -52.49 -0.29 2.76 16 18 C 0.07 2.04 5.49 -17.51 -0.10 1.94 16 19 N -0.87 -25.08 13.96 55.48 0.77 -24.31 16 20 Si 0.90 22.86 28.62 -169.99 -4.86 18.00 16 21 H -0.27 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.24 -6.33 7.11 56.52 0.40 -5.93 16 24 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 26 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 27 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.41 5.57 5.47 -40.82 -0.22 5.35 16 30 H 0.12 1.52 6.40 -52.49 -0.34 1.19 16 31 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 32 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.14 3.00 5.64 -52.48 -0.30 2.70 16 34 H 0.28 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 304.61 15.07 4.59 4.59 Total: -1.00 -33.30 304.61 -5.14 -38.44 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -3.23 Total: 4.29 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -0.97 Total: -1.10 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.43 Total: -35.86 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -1.10 Total: -28.37 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -4.86 Total: 18.00 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.30 -5.14 -38.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194083050.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.574 kcal (2) G-P(sol) polarization free energy of solvation -33.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds