Wall clock time and date at job start Tue Mar 31 2020 01:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34222 * 117.00220 * 2 1 4 4 O 1.20832 * 119.99756 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00364 * 179.97438 * 3 2 1 6 6 N 1.46499 * 109.47416 * 179.97438 * 5 3 2 7 7 C 1.34780 * 119.99972 * 179.97438 * 6 5 3 8 8 O 1.21595 * 120.00051 * 359.97438 * 7 6 5 9 9 C 1.47540 * 120.00019 * 180.02562 * 7 6 5 10 10 C 1.39668 * 120.19406 * 0.02562 * 9 7 6 11 11 C 1.37826 * 119.91429 * 180.02562 * 10 9 7 12 12 C 1.38570 * 120.32908 * 0.02562 * 11 10 9 13 13 C 1.38027 * 120.39755 * 0.02562 * 12 11 10 14 14 C 1.38832 * 120.07614 * 359.95142 * 13 12 11 15 15 O 1.35518 * 120.16662 * 180.02562 * 14 13 12 16 16 C 1.34817 * 116.99515 * 354.39983 * 15 14 13 17 17 H 1.07998 * 120.00286 * 5.05380 * 16 15 14 18 18 C 1.38705 * 119.99676 * 185.05364 * 16 15 14 19 19 N 1.31516 * 119.99555 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00179 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47116 * 89.99960 * 20 18 16 22 22 H 1.48496 * 109.47169 * 210.00207 * 20 18 16 23 23 H 1.48504 * 109.47217 * 330.00210 * 20 18 16 24 24 H 1.09004 * 109.47655 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47285 * 300.00289 * 1 2 3 26 26 H 1.09000 * 109.47283 * 59.99811 * 1 2 3 27 27 H 1.09005 * 109.47268 * 59.99706 * 5 3 2 28 28 H 1.09002 * 109.46972 * 300.00201 * 5 3 2 29 29 H 0.97003 * 120.00032 * 0.02562 * 6 5 3 30 30 H 1.07997 * 120.04235 * 0.27181 * 10 9 7 31 31 H 1.08005 * 119.83485 * 179.97438 * 11 10 9 32 32 H 1.08001 * 119.80371 * 179.97438 * 12 11 10 33 33 H 1.08005 * 119.96278 * 179.97438 * 13 12 11 34 34 H 0.97006 * 119.99663 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6797 -0.0002 7 6 5.2921 2.9949 0.0007 8 8 6.1295 2.1133 0.0026 9 6 5.7105 4.4098 0.0005 10 6 4.7520 5.4257 0.0000 11 6 5.1493 6.7454 -0.0007 12 6 6.4963 7.0707 -0.0014 13 6 7.4546 6.0774 -0.0019 14 6 7.0731 4.7425 -0.0008 15 8 8.0125 3.7658 -0.0008 16 6 9.2983 4.1534 -0.1192 17 1 9.5471 5.2043 -0.1263 18 6 10.3017 3.2023 -0.2319 19 7 11.5561 3.5805 -0.3469 20 14 9.8715 1.3846 -0.2189 21 1 9.6220 0.9251 -1.6087 22 1 10.9993 0.6132 0.3626 23 1 8.6512 1.1706 0.5998 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 3.9564 0.7805 -0.8892 28 1 3.9556 0.7808 0.8908 29 1 3.3136 3.3830 -0.0005 30 1 3.7010 5.1774 0.0042 31 1 4.4070 7.5300 -0.0015 32 1 6.7981 8.1077 -0.0023 33 1 8.5026 6.3389 -0.0029 34 1 12.2579 2.9154 -0.4254 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194083050.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:28 Heat of formation + Delta-G solvation = -133.939606 kcal Electronic energy + Delta-G solvation = -21130.295511 eV Core-core repulsion = 17607.891444 eV Total energy + Delta-G solvation = -3522.404066 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.85025 -41.27276 -39.89608 -38.17285 -37.76680 -35.61339 -34.50225 -32.46504 -30.80481 -30.06262 -27.86738 -27.16763 -24.68674 -23.06873 -22.20479 -21.70599 -19.90853 -19.75478 -18.65502 -18.25684 -17.82219 -17.41408 -16.90365 -16.34562 -16.29746 -15.83793 -15.63247 -15.52624 -15.42282 -14.62774 -14.54276 -14.30787 -14.07624 -14.02220 -13.65529 -13.10573 -12.99061 -12.84472 -12.57565 -12.39346 -12.00166 -11.88318 -11.80280 -11.54503 -10.95169 -10.85047 -10.34870 -9.87818 -9.16041 -8.55954 -6.25481 0.02066 0.64225 0.93068 1.28448 1.29702 1.33665 1.61215 1.95137 2.28334 2.32187 2.76789 3.00329 3.15548 3.55774 3.86983 4.01032 4.17710 4.23743 4.27780 4.33287 4.34500 4.47857 4.57642 4.71098 4.79923 5.04099 5.13004 5.24974 5.28353 5.47563 5.60889 5.69457 5.83839 6.14588 6.42173 6.51349 6.80378 7.23926 7.58293 8.54290 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.017222 B = 0.005217 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.439047 B = 5365.708427 C = 6967.902837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.356 6.356 3 C 0.474 3.526 4 O -0.524 6.524 5 C 0.125 3.875 6 N -0.716 5.716 7 C 0.565 3.435 8 O -0.562 6.562 9 C -0.234 4.234 10 C -0.031 4.031 11 C -0.190 4.190 12 C -0.039 4.039 13 C -0.249 4.249 14 C 0.166 3.834 15 O -0.207 6.207 16 C -0.405 4.405 17 H 0.092 0.908 18 C 0.025 3.975 19 N -0.912 5.912 20 Si 0.957 3.043 21 H -0.275 1.275 22 H -0.267 1.267 23 H -0.261 1.261 24 H 0.133 0.867 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.416 0.584 30 H 0.158 0.842 31 H 0.165 0.835 32 H 0.153 0.847 33 H 0.118 0.882 34 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.817 -1.888 0.700 22.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.272 6.272 3 C 0.317 3.683 4 O -0.413 6.413 5 C 0.001 3.999 6 N -0.375 5.375 7 C 0.355 3.645 8 O -0.441 6.441 9 C -0.239 4.239 10 C -0.050 4.050 11 C -0.208 4.208 12 C -0.057 4.057 13 C -0.269 4.269 14 C 0.113 3.887 15 O -0.111 6.111 16 C -0.481 4.481 17 H 0.109 0.891 18 C -0.175 4.175 19 N -0.551 5.551 20 Si 0.780 3.220 21 H -0.200 1.200 22 H -0.192 1.192 23 H -0.186 1.186 24 H 0.151 0.849 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.135 0.865 28 H 0.135 0.865 29 H 0.256 0.744 30 H 0.175 0.825 31 H 0.182 0.818 32 H 0.170 0.830 33 H 0.136 0.864 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -22.265 -2.584 0.704 22.426 hybrid contribution 0.221 -0.192 -0.063 0.300 sum -22.044 -2.776 0.641 22.227 Atomic orbital electron populations 1.23651 0.73772 1.06052 1.02987 1.86484 1.25683 1.31625 1.83377 1.23350 0.91395 0.81899 0.71648 1.90652 1.67142 1.36939 1.46584 1.20665 0.87221 0.84906 1.07130 1.45455 1.06997 1.07805 1.77267 1.18236 0.81761 0.88893 0.75606 1.90861 1.52316 1.50427 1.50490 1.19138 0.90880 0.93380 1.20471 1.21325 0.98356 0.91915 0.93386 1.21217 0.95927 0.96406 1.07266 1.21454 0.92802 0.99260 0.92216 1.21344 1.01287 0.92139 1.12081 1.19686 0.88733 0.88708 0.91605 1.83755 1.15151 1.32544 1.79609 1.20905 0.79726 0.95632 1.51791 0.89061 1.25079 0.93741 1.03554 0.95125 1.69689 0.99808 1.36889 1.48760 0.85391 0.78351 0.78843 0.79382 1.20039 1.19192 1.18557 0.84882 0.91461 0.91466 0.86464 0.86451 0.74377 0.82455 0.81754 0.82979 0.86443 0.90437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 113.37 1.20 1.51 16 2 O -0.36 -6.30 10.56 -51.34 -0.54 -6.84 16 3 C 0.47 9.95 8.03 71.23 0.57 10.52 16 4 O -0.52 -12.69 15.42 21.95 0.34 -12.35 16 5 C 0.13 2.95 6.26 85.63 0.54 3.49 16 6 N -0.72 -20.32 5.48 -469.99 -2.57 -22.90 16 7 C 0.56 22.22 7.76 86.70 0.67 22.89 16 8 O -0.56 -27.57 15.17 16.88 0.26 -27.31 16 9 C -0.23 -9.22 5.89 -19.98 -0.12 -9.34 16 10 C -0.03 -0.89 9.54 22.52 0.21 -0.68 16 11 C -0.19 -4.86 10.02 22.25 0.22 -4.63 16 12 C -0.04 -1.20 10.03 22.30 0.22 -0.97 16 13 C -0.25 -10.52 9.16 22.36 0.20 -10.31 16 14 C 0.17 7.96 6.66 22.91 0.15 8.11 16 15 O -0.21 -11.85 6.67 0.83 0.01 -11.84 16 16 C -0.40 -24.44 9.95 67.93 0.68 -23.77 16 17 H 0.09 5.58 5.44 -2.91 -0.02 5.57 16 18 C 0.03 1.52 5.49 84.85 0.47 1.99 16 19 N -0.91 -55.36 13.96 21.62 0.30 -55.06 16 20 Si 0.96 49.78 28.62 68.60 1.96 51.75 16 21 H -0.27 -14.07 7.11 99.48 0.71 -13.36 16 22 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 23 H -0.26 -14.44 7.11 99.48 0.71 -13.73 16 24 H 0.13 0.68 8.14 -2.38 -0.02 0.66 16 25 H 0.07 0.74 8.13 -2.39 -0.02 0.72 16 26 H 0.07 0.74 8.13 -2.39 -0.02 0.72 16 27 H 0.12 2.68 8.14 -2.38 -0.02 2.66 16 28 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 29 H 0.42 9.97 5.47 -92.71 -0.51 9.46 16 30 H 0.16 3.17 6.40 -2.91 -0.02 3.15 16 31 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 32 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 33 H 0.12 5.40 5.64 -2.91 -0.02 5.38 16 34 H 0.29 15.97 8.31 -92.70 -0.77 15.20 16 Total: -1.00 -77.91 304.61 5.42 -72.50 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 0.65 Total: 13.26 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: 5.02 Total: -1.20 kcal Atomic # 7 Polarization: -75.68 SS G_CDS: -2.27 Total: -77.96 kcal Atomic # 8 Polarization: -58.40 SS G_CDS: 0.06 Total: -58.34 kcal Atomic # 14 Polarization: 49.78 SS G_CDS: 1.96 Total: 51.75 kcal Total: -77.91 5.42 -72.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194083050.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.442 kcal (2) G-P(sol) polarization free energy of solvation -77.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds