Wall clock time and date at job start Tue Mar 31 2020 00:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47023 * 2 1 4 4 O 1.45202 * 109.47530 * 239.99349 * 2 1 3 5 5 C 1.34756 * 116.99730 * 90.00135 * 4 2 1 6 6 O 1.21514 * 120.00085 * 0.02562 * 5 4 2 7 7 C 1.47389 * 120.00029 * 180.02562 * 5 4 2 8 8 C 1.39733 * 120.20532 * 0.02562 * 7 5 4 9 9 C 1.37798 * 119.91851 * 180.02562 * 8 7 5 10 10 C 1.38598 * 120.33078 * 359.97438 * 9 8 7 11 11 C 1.38016 * 120.41232 * 0.02733 * 10 9 8 12 12 C 1.38839 * 120.07969 * 359.97438 * 11 10 9 13 13 O 1.35503 * 120.16664 * 180.02562 * 12 11 10 14 14 C 1.34818 * 116.99847 * 354.41394 * 13 12 11 15 15 H 1.07993 * 120.00260 * 5.07057 * 14 13 12 16 16 C 1.38709 * 119.99807 * 185.07457 * 14 13 12 17 17 N 1.31518 * 119.99862 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99750 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47112 * 89.99906 * 18 16 14 20 20 H 1.48500 * 109.46654 * 209.99473 * 18 16 14 21 21 H 1.48493 * 109.47197 * 329.99636 * 18 16 14 22 22 C 1.50707 * 109.46503 * 119.99620 * 2 1 3 23 23 N 1.34772 * 120.00168 * 299.99673 * 22 2 1 24 24 O 1.21281 * 119.99833 * 120.00275 * 22 2 1 25 25 H 1.09004 * 109.47460 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47728 * 300.00728 * 1 2 3 27 27 H 1.09000 * 109.46642 * 60.00627 * 1 2 3 28 28 H 1.08003 * 120.04009 * 0.02562 * 8 7 5 29 29 H 1.08003 * 119.83590 * 180.02562 * 9 8 7 30 30 H 1.07997 * 119.78999 * 180.02562 * 10 9 8 31 31 H 1.07998 * 119.96341 * 179.72327 * 11 10 9 32 32 H 0.96999 * 119.99709 * 180.02562 * 17 16 14 33 33 H 0.97005 * 119.99993 * 0.02562 * 23 22 2 34 34 H 0.96999 * 120.00010 * 180.02562 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0141 -0.6846 -1.1855 5 6 2.2180 0.0668 -2.2853 6 8 1.9978 1.2614 -2.2545 7 6 2.7082 -0.5604 -3.5258 8 6 2.9623 -1.9339 -3.5662 9 6 3.4210 -2.5140 -4.7289 10 6 3.6316 -1.7420 -5.8606 11 6 3.3851 -0.3843 -5.8359 12 6 2.9227 0.2180 -4.6735 13 8 2.6796 1.5508 -4.6474 14 6 3.0160 2.2559 -5.7462 15 1 3.3814 1.7451 -6.6247 16 6 2.8928 3.6375 -5.7483 17 7 2.4474 4.2595 -4.6785 18 14 3.3596 4.6145 -7.2705 19 1 2.1724 4.7558 -8.1513 20 1 3.8394 5.9606 -6.8667 21 1 4.4380 3.9038 -8.0034 22 6 2.0322 -0.7104 1.2306 23 7 1.7066 -0.2498 2.4546 24 8 2.7294 -1.6965 1.1194 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3635 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 2.7994 -2.5400 -2.6873 29 1 3.6166 -3.5758 -4.7588 30 1 3.9909 -2.2058 -6.7673 31 1 3.5560 0.2112 -6.7205 32 1 2.3610 5.2257 -4.6801 33 1 1.1486 0.5387 2.5436 34 1 2.0301 -0.7069 3.2467 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194857980.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:59 Heat of formation + Delta-G solvation = -121.492097 kcal Electronic energy + Delta-G solvation = -21459.780399 eV Core-core repulsion = 17937.916097 eV Total energy + Delta-G solvation = -3521.864302 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.25784 -39.33110 -38.43325 -36.42379 -35.59047 -33.99213 -32.42561 -31.55984 -30.33013 -28.96423 -25.55163 -24.98511 -23.38063 -21.67867 -20.67517 -19.96119 -18.09024 -17.90646 -17.73659 -16.66228 -16.35601 -15.52337 -15.51660 -14.73438 -14.64449 -14.39601 -14.11348 -13.75211 -13.66373 -13.43861 -12.94677 -12.59967 -12.53163 -12.18874 -11.77186 -11.49333 -11.34491 -11.12417 -10.93936 -10.79153 -10.50356 -10.38774 -9.84042 -9.83645 -9.74090 -9.29122 -8.94564 -8.32485 -7.38624 -6.53174 -4.12575 1.58925 2.31671 2.53299 2.77040 3.07825 3.09182 3.13784 3.40593 3.72481 3.87530 4.54120 4.70188 4.92604 5.00249 5.10770 5.13226 5.26924 5.57064 5.63138 5.70319 5.79958 6.02879 6.09830 6.14556 6.56056 6.61525 6.66118 6.86380 6.94731 7.09009 7.15301 7.22375 7.28467 7.66101 7.85787 8.13816 8.64573 8.87435 9.56432 10.60725 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.018000 B = 0.005326 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.222558 B = 5255.612565 C = 6552.467436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.068 3.932 3 H 0.112 0.888 4 O -0.338 6.338 5 C 0.499 3.501 6 O -0.476 6.476 7 C -0.216 4.216 8 C -0.013 4.013 9 C -0.233 4.233 10 C -0.042 4.042 11 C -0.240 4.240 12 C 0.192 3.808 13 O -0.126 6.126 14 C -0.402 4.402 15 H 0.096 0.904 16 C 0.045 3.955 17 N -0.833 5.833 18 Si 0.943 3.057 19 H -0.271 1.271 20 H -0.276 1.276 21 H -0.265 1.265 22 C 0.524 3.476 23 N -0.852 5.852 24 O -0.521 6.521 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.127 0.873 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.135 0.865 32 H 0.272 0.728 33 H 0.402 0.598 34 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.744 -6.791 7.559 10.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.009 3.991 3 H 0.129 0.871 4 O -0.255 6.255 5 C 0.345 3.655 6 O -0.363 6.363 7 C -0.219 4.219 8 C -0.031 4.031 9 C -0.252 4.252 10 C -0.061 4.061 11 C -0.259 4.259 12 C 0.133 3.867 13 O -0.024 6.024 14 C -0.478 4.478 15 H 0.114 0.886 16 C -0.163 4.163 17 N -0.465 5.465 18 Si 0.767 3.233 19 H -0.197 1.197 20 H -0.201 1.201 21 H -0.190 1.190 22 C 0.307 3.693 23 N -0.419 5.419 24 O -0.396 6.396 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.098 0.902 28 H 0.145 0.855 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.152 0.848 32 H 0.082 0.918 33 H 0.231 0.769 34 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -2.531 -6.586 7.561 10.342 hybrid contribution 0.059 0.815 -0.326 0.880 sum -2.472 -5.771 7.235 9.579 Atomic orbital electron populations 1.22145 0.92306 1.03593 1.04059 1.22221 0.95668 0.97997 0.83201 0.87054 1.86676 1.78435 1.41295 1.19136 1.21217 0.75775 0.85487 0.83068 1.90987 1.47233 1.14900 1.83164 1.17957 1.19940 0.93807 0.90158 1.21034 0.92236 0.92279 0.97574 1.20562 1.11297 0.99350 0.94039 1.20982 0.94538 0.93247 0.97305 1.21102 1.10376 0.95448 0.98938 1.19220 0.90469 0.85460 0.91554 1.84136 1.66432 1.12836 1.39004 1.21536 1.45542 0.89190 0.91530 0.88635 1.25410 0.96237 0.95817 0.98833 1.70113 1.39160 1.09755 1.27445 0.85691 0.79113 0.78912 0.79606 1.19670 1.20088 1.18963 1.20312 0.79769 0.84376 0.84804 1.43707 1.56508 1.34143 1.07520 1.90768 1.36571 1.25592 1.86627 0.91148 0.90691 0.90150 0.85496 0.86892 0.86914 0.84791 0.91762 0.76890 0.76429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 9.45 37.16 0.35 -1.67 16 2 C 0.07 1.07 2.99 -27.88 -0.08 0.98 16 3 H 0.11 1.78 7.16 -51.93 -0.37 1.41 16 4 O -0.34 -6.65 8.67 -47.33 -0.41 -7.06 16 5 C 0.50 11.47 7.86 34.46 0.27 11.75 16 6 O -0.48 -12.50 14.43 -26.59 -0.38 -12.89 16 7 C -0.22 -4.93 5.89 -104.83 -0.62 -5.54 16 8 C -0.01 -0.25 9.61 -39.18 -0.38 -0.62 16 9 C -0.23 -4.05 10.02 -39.61 -0.40 -4.45 16 10 C -0.04 -0.75 10.03 -39.53 -0.40 -1.15 16 11 C -0.24 -5.11 9.16 -39.44 -0.36 -5.48 16 12 C 0.19 4.78 6.66 -38.57 -0.26 4.52 16 13 O -0.13 -3.64 7.84 -21.02 -0.16 -3.81 16 14 C -0.40 -11.14 9.49 30.91 0.29 -10.84 16 15 H 0.10 2.39 5.21 -52.49 -0.27 2.12 16 16 C 0.04 1.22 5.49 -17.51 -0.10 1.12 16 17 N -0.83 -24.40 13.67 55.48 0.76 -23.64 16 18 Si 0.94 20.02 29.55 -169.99 -5.02 15.00 16 19 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 20 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 21 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 22 C 0.52 7.45 7.51 -10.98 -0.08 7.37 16 23 N -0.85 -7.35 8.77 31.22 0.27 -7.08 16 24 O -0.52 -9.68 17.34 -14.10 -0.24 -9.92 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.07 0.64 7.56 -51.93 -0.39 0.24 16 27 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 28 H 0.13 2.22 7.61 -52.48 -0.40 1.82 16 29 H 0.11 1.61 8.06 -52.48 -0.42 1.18 16 30 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.13 2.78 5.64 -52.49 -0.30 2.48 16 32 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.40 2.27 8.25 -40.82 -0.34 1.93 16 34 H 0.40 2.84 8.93 -40.82 -0.36 2.47 16 LS Contribution 306.80 15.07 4.62 4.62 Total: -1.00 -35.82 306.80 -5.58 -41.40 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -3.26 Total: 7.37 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -1.75 Total: -4.00 kcal Atomic # 7 Polarization: -31.75 SS G_CDS: 1.03 Total: -30.72 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -1.20 Total: -33.67 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -35.82 -5.58 -41.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194857980.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.088 kcal (2) G-P(sol) polarization free energy of solvation -35.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds