Wall clock time and date at job start Tue Mar 31 2020 01:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34233 * 116.99972 * 2 1 4 4 O 1.20819 * 119.99903 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99907 * 180.02562 * 3 2 1 6 6 N 1.46501 * 109.46752 * 180.02562 * 5 3 2 7 7 C 1.36741 * 119.99858 * 96.21635 * 6 5 3 8 8 H 1.08005 * 119.99921 * 159.49668 * 7 6 5 9 9 C 1.39071 * 120.00151 * 339.49342 * 7 6 5 10 10 N 1.31360 * 120.00058 * 355.27414 * 9 7 6 11 11 Si 1.86803 * 119.99942 * 175.26785 * 9 7 6 12 12 H 1.48494 * 109.47291 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.46846 * 120.00352 * 11 9 7 14 14 H 1.48497 * 109.47094 * 240.00395 * 11 9 7 15 15 C 1.34781 * 119.99728 * 276.21036 * 6 5 3 16 16 O 1.21839 * 120.00308 * 5.05308 * 15 6 5 17 17 C 1.41334 * 119.99512 * 185.04460 * 15 6 5 18 18 C 1.35788 * 119.99889 * 187.39732 * 17 15 6 19 19 C 1.41522 * 120.00087 * 23.33321 * 18 17 15 20 20 C 1.38034 * 126.11033 * 192.40606 * 19 18 17 21 21 C 1.40285 * 106.52317 * 179.97438 * 20 19 18 22 22 C 1.35180 * 107.21663 * 359.97438 * 21 20 19 23 23 O 1.34038 * 109.03953 * 359.73439 * 22 21 20 24 24 H 1.09000 * 109.47057 * 299.99643 * 1 2 3 25 25 H 1.08991 * 109.47179 * 59.99860 * 1 2 3 26 26 H 1.09003 * 109.46751 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46934 * 60.00339 * 5 3 2 28 28 H 1.08994 * 109.47119 * 300.00146 * 5 3 2 29 29 H 0.97001 * 120.00166 * 179.97438 * 10 9 7 30 30 H 1.08003 * 120.00552 * 7.40070 * 17 15 6 31 31 H 1.07999 * 120.00205 * 203.33188 * 18 17 15 32 32 H 1.07990 * 126.73545 * 359.97438 * 20 19 18 33 33 H 1.07999 * 126.39187 * 179.97438 * 21 20 19 34 34 H 1.07999 * 125.47827 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 7 3.9817 2.6798 0.0002 7 6 4.2989 3.2983 1.1777 8 1 4.9060 4.1916 1.1720 9 6 3.8400 2.7772 2.3826 10 7 3.0260 1.7461 2.3847 11 14 4.3810 3.5433 3.9981 12 1 5.2916 4.6840 3.7246 13 1 3.1893 4.0286 4.7394 14 1 5.0918 2.5268 4.8145 15 6 4.0511 3.3626 -1.1599 16 8 3.6811 2.8409 -2.1969 17 6 4.5530 4.6837 -1.1732 18 6 4.4846 5.4246 -2.3091 19 6 3.5193 5.1171 -3.2973 20 6 3.4857 5.6150 -4.5843 21 6 2.3648 5.0430 -5.2043 22 6 1.7722 4.2374 -4.2948 23 8 2.4716 4.2792 -3.1521 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.9557 0.7810 -0.8908 28 1 3.9564 0.7806 0.8891 29 1 2.7062 1.3824 3.2251 30 1 4.9909 5.1041 -0.2799 31 1 5.1667 6.2484 -2.4584 32 1 4.1850 6.3087 -5.0270 33 1 2.0366 5.2143 -6.2188 34 1 0.8810 3.6511 -4.4632 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255516329.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:26 Heat of formation + Delta-G solvation = -51.836592 kcal Electronic energy + Delta-G solvation = -22412.553574 eV Core-core repulsion = 18893.709761 eV Total energy + Delta-G solvation = -3518.843813 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.72030 -39.48025 -38.38398 -35.54513 -34.67375 -33.18627 -32.19062 -31.61756 -29.05826 -27.76851 -26.27666 -24.93610 -22.88111 -21.03489 -20.54493 -19.69280 -18.87150 -17.46234 -16.66454 -16.49016 -15.81931 -15.43388 -15.28467 -15.11257 -14.48980 -14.39018 -13.58942 -13.45362 -13.24489 -12.52163 -12.41630 -12.37562 -12.19381 -11.89954 -11.55956 -11.47637 -11.35970 -11.22531 -10.77929 -10.56234 -10.37072 -9.80946 -9.70321 -9.44228 -9.22276 -9.02822 -8.55001 -7.98018 -7.16810 -6.54366 -4.05949 1.15037 2.84605 3.05625 3.12812 3.16715 3.36552 3.69969 3.77064 3.83685 4.01652 4.43861 4.78845 5.06423 5.36985 5.51561 5.57352 5.71139 5.78647 5.80638 5.96153 6.11246 6.24267 6.26547 6.35133 6.46002 6.66871 6.72151 6.82685 6.99036 7.18177 7.24074 7.47883 7.60191 7.91883 8.18557 8.90195 9.14837 9.32887 9.78359 10.48667 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.016722 B = 0.007329 C = 0.005463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.040114 B = 3819.397207 C = 5123.700122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.375 6.375 3 C 0.489 3.511 4 O -0.504 6.504 5 C 0.153 3.847 6 N -0.416 5.416 7 C -0.320 4.320 8 H 0.107 0.893 9 C 0.034 3.966 10 N -0.877 5.877 11 Si 0.936 3.064 12 H -0.267 1.267 13 H -0.280 1.280 14 H -0.278 1.278 15 C 0.480 3.520 16 O -0.583 6.583 17 C -0.145 4.145 18 C -0.070 4.070 19 C 0.039 3.961 20 C -0.214 4.214 21 C -0.232 4.232 22 C -0.037 4.037 23 O -0.106 6.106 24 H 0.053 0.947 25 H 0.049 0.951 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.138 0.862 29 H 0.274 0.726 30 H 0.136 0.864 31 H 0.145 0.855 32 H 0.141 0.859 33 H 0.138 0.862 34 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.345 1.650 -4.883 5.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.292 6.292 3 C 0.331 3.669 4 O -0.389 6.389 5 C 0.027 3.973 6 N -0.133 5.133 7 C -0.448 4.448 8 H 0.125 0.875 9 C -0.170 4.170 10 N -0.516 5.516 11 Si 0.762 3.238 12 H -0.191 1.191 13 H -0.206 1.206 14 H -0.204 1.204 15 C 0.274 3.726 16 O -0.470 6.470 17 C -0.166 4.166 18 C -0.092 4.092 19 C -0.012 4.012 20 C -0.234 4.234 21 C -0.251 4.251 22 C -0.108 4.108 23 O 0.003 5.997 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.104 0.896 27 H 0.093 0.907 28 H 0.155 0.845 29 H 0.085 0.915 30 H 0.153 0.847 31 H 0.163 0.837 32 H 0.159 0.841 33 H 0.156 0.844 34 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -0.226 1.375 -4.897 5.092 hybrid contribution -0.193 0.442 0.857 0.984 sum -0.419 1.818 -4.040 4.450 Atomic orbital electron populations 1.22916 0.78905 1.01744 1.01519 1.86464 1.21499 1.35571 1.85707 1.23927 0.92253 0.80446 0.70305 1.90521 1.66557 1.36391 1.45452 1.20660 0.87244 0.85502 1.03860 1.43401 1.55237 1.08458 1.06244 1.19836 1.30558 1.11553 0.82826 0.87509 1.25355 0.95084 0.96415 1.00166 1.69697 1.30522 1.23356 1.28071 0.85716 0.78427 0.78966 0.80699 1.19122 1.20593 1.20404 1.16860 0.84122 0.87392 0.84246 1.90736 1.53379 1.70578 1.32305 1.22454 1.01705 0.94822 0.97614 1.20349 0.95944 1.00743 0.92134 1.19817 0.91713 0.94168 0.95545 1.22035 1.01246 1.06299 0.93775 1.21480 0.99198 1.03711 1.00741 1.24121 0.99136 1.02349 0.85223 1.84666 1.31601 1.49250 1.34203 0.92783 0.93209 0.89628 0.90664 0.84481 0.91474 0.84663 0.83737 0.84105 0.84421 0.79514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 10.56 101.05 1.07 1.85 16 2 O -0.37 -8.30 10.57 -39.27 -0.41 -8.72 16 3 C 0.49 12.40 6.12 36.01 0.22 12.63 16 4 O -0.50 -14.32 15.94 -18.74 -0.30 -14.62 16 5 C 0.15 3.74 5.09 -5.19 -0.03 3.71 16 6 N -0.42 -10.55 2.17 -119.44 -0.26 -10.81 16 7 C -0.32 -7.90 9.18 -15.05 -0.14 -8.04 16 8 H 0.11 2.42 5.82 -52.48 -0.31 2.11 16 9 C 0.03 0.82 5.24 -17.44 -0.09 0.73 16 10 N -0.88 -22.33 8.74 55.50 0.49 -21.84 16 11 Si 0.94 18.98 29.56 -169.99 -5.02 13.96 16 12 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 13 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 14 H -0.28 -5.57 7.11 56.52 0.40 -5.16 16 15 C 0.48 11.96 6.73 -15.08 -0.10 11.86 16 16 O -0.58 -15.55 12.30 -20.17 -0.25 -15.80 16 17 C -0.15 -3.03 9.14 -39.28 -0.36 -3.39 16 18 C -0.07 -1.29 9.86 -39.21 -0.39 -1.68 16 19 C 0.04 0.79 6.00 -38.41 -0.23 0.56 16 20 C -0.21 -3.67 10.90 -38.89 -0.42 -4.09 16 21 C -0.23 -3.83 10.87 -39.90 -0.43 -4.26 16 22 C -0.04 -0.68 12.06 29.64 0.36 -0.33 16 23 O -0.11 -2.42 7.00 -20.61 -0.14 -2.57 16 24 H 0.05 0.99 8.13 -51.93 -0.42 0.57 16 25 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 26 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.08 1.74 7.69 -51.93 -0.40 1.34 16 28 H 0.14 3.33 6.07 -51.93 -0.32 3.02 16 29 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 30 H 0.14 2.53 6.04 -52.48 -0.32 2.21 16 31 H 0.15 1.97 8.06 -52.49 -0.42 1.55 16 32 H 0.14 1.95 8.06 -52.49 -0.42 1.53 16 33 H 0.14 1.81 8.06 -52.49 -0.42 1.39 16 34 H 0.19 2.83 8.06 -52.49 -0.42 2.41 16 LS Contribution 299.92 15.07 4.52 4.52 Total: -1.00 -32.76 299.92 -5.36 -38.13 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -3.43 Total: 8.22 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: -0.55 Total: 9.54 kcal Atomic # 7 Polarization: -32.88 SS G_CDS: 0.23 Total: -32.65 kcal Atomic # 8 Polarization: -40.60 SS G_CDS: -1.11 Total: -41.71 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.02 Total: 13.96 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.76 -5.36 -38.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255516329.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.711 kcal (2) G-P(sol) polarization free energy of solvation -32.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds