Wall clock time and date at job start Tue Mar 31 2020 01:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99908 * 2 1 4 4 H 1.48503 * 109.46603 * 239.99905 * 3 2 1 5 5 H 1.48492 * 109.47192 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47185 * 120.00122 * 3 2 1 7 7 C 1.37873 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00027 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00085 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47331 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47297 * 179.97438 * 10 9 7 12 12 C 1.39046 * 119.99869 * 180.02562 * 11 10 9 13 13 C 1.39233 * 119.93419 * 5.89612 * 12 11 10 14 14 C 1.37590 * 120.07217 * 179.97438 * 13 12 11 15 15 C 1.39816 * 119.93023 * 0.02562 * 14 13 12 16 16 C 1.47516 * 120.06880 * 180.02562 * 15 14 13 17 17 N 1.34778 * 120.00229 * 359.97438 * 16 15 14 18 18 O 1.21602 * 119.99747 * 179.97438 * 16 15 14 19 19 C 1.39780 * 119.86073 * 359.97438 * 15 14 13 20 20 C 1.37632 * 119.93084 * 359.74752 * 19 15 14 21 21 N 1.48010 * 119.96621 * 180.25220 * 20 19 15 22 22 O 1.21801 * 120.00463 * 37.52671 * 21 20 19 23 23 O 1.21802 * 120.00146 * 217.53229 * 21 20 19 24 24 H 0.97007 * 120.00310 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47066 * 59.99619 * 9 7 2 26 26 H 1.09003 * 109.46985 * 299.99653 * 9 7 2 27 27 H 1.08997 * 109.47115 * 300.00340 * 10 9 7 28 28 H 1.09008 * 109.46909 * 60.00035 * 10 9 7 29 29 H 0.97001 * 119.99865 * 359.97438 * 11 10 9 30 30 H 1.08004 * 119.96728 * 0.02562 * 13 12 11 31 31 H 1.08003 * 120.03434 * 180.02562 * 14 13 12 32 32 H 0.96995 * 119.99773 * 359.97438 * 17 16 15 33 33 H 0.97004 * 119.99823 * 180.02562 * 17 16 15 34 34 H 1.07997 * 120.03390 * 180.02562 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5127 -4.9308 0.0012 12 6 2.2079 -6.1349 0.0018 13 6 3.5947 -6.1364 0.1258 14 6 4.2855 -7.3264 0.1273 15 6 3.5934 -8.5349 0.0036 16 6 4.3309 -9.8125 0.0054 17 7 5.6733 -9.8156 0.1259 18 8 3.7277 -10.8629 -0.1018 19 6 2.2012 -8.5301 -0.1207 20 6 1.5154 -7.3368 -0.1158 21 7 0.0407 -7.3310 -0.2418 22 8 -0.6204 -8.1981 0.3011 23 8 -0.5119 -6.4593 -0.8885 24 1 -0.4851 0.8401 0.0004 25 1 0.6246 -2.5570 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 2.8718 -3.6043 -0.8894 28 1 2.8718 -3.6043 0.8906 29 1 0.5427 -4.9308 0.0019 30 1 4.1288 -5.2026 0.2218 31 1 5.3612 -7.3268 0.2240 32 1 6.1545 -8.9777 0.2111 33 1 6.1582 -10.6557 0.1267 34 1 1.6638 -9.4620 -0.2160 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273280777.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:29 Heat of formation + Delta-G solvation = -48.214024 kcal Electronic energy + Delta-G solvation = -20793.351470 eV Core-core repulsion = 17306.957495 eV Total energy + Delta-G solvation = -3486.393975 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.36945 -41.29044 -39.89234 -37.86366 -37.23326 -35.25523 -34.82596 -33.00514 -32.39080 -30.19260 -27.54135 -26.83190 -24.50185 -24.22622 -22.57927 -21.83594 -20.26076 -19.87752 -19.09097 -18.72710 -18.50778 -17.92840 -17.63617 -16.65820 -16.39976 -16.15956 -15.81055 -15.45655 -15.35497 -15.10115 -14.33702 -14.33332 -14.03328 -13.38335 -12.99922 -12.95644 -12.80562 -12.53976 -12.46035 -12.37106 -12.19063 -11.63690 -11.43861 -11.36475 -11.29596 -10.73869 -10.68318 -10.58684 -8.97217 -8.23999 -6.36881 -1.07736 -0.31397 0.10129 0.35025 1.43838 1.46357 1.54219 1.62423 1.99553 2.42373 2.48116 2.52180 3.11722 3.19093 3.69358 3.74317 3.79266 3.82455 4.24155 4.36064 4.42361 4.59571 4.77625 4.81452 4.90828 5.09606 5.23909 5.39270 5.49437 5.65938 5.85463 5.89012 6.03919 6.18921 6.39204 6.41989 6.79611 7.29437 7.34178 8.88270 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.022726 B = 0.003797 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.752519 B = 7373.082822 C = 8542.004917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.971 3.029 4 H -0.263 1.263 5 H -0.291 1.291 6 H -0.262 1.262 7 C -0.540 4.540 8 H 0.079 0.921 9 C 0.014 3.986 10 C 0.131 3.869 11 N -0.712 5.712 12 C 0.294 3.706 13 C -0.198 4.198 14 C 0.036 3.964 15 C -0.207 4.207 16 C 0.575 3.425 17 N -0.824 5.824 18 O -0.593 6.593 19 C 0.040 3.960 20 C -0.154 4.154 21 N 0.041 4.959 22 O -0.165 6.165 23 O -0.213 6.213 24 H 0.264 0.736 25 H -0.004 1.004 26 H -0.006 1.006 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.402 0.598 30 H 0.177 0.823 31 H 0.198 0.802 32 H 0.419 0.581 33 H 0.416 0.584 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.523 -14.713 1.130 22.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.795 3.205 4 H -0.188 1.188 5 H -0.217 1.217 6 H -0.187 1.187 7 C -0.578 4.578 8 H 0.097 0.903 9 C -0.024 4.024 10 C 0.009 3.991 11 N -0.334 5.334 12 C 0.176 3.824 13 C -0.221 4.221 14 C 0.016 3.984 15 C -0.214 4.214 16 C 0.362 3.638 17 N -0.389 5.389 18 O -0.474 6.474 19 C 0.020 3.980 20 C -0.244 4.244 21 N 0.553 4.447 22 O -0.384 6.384 23 O -0.415 6.415 24 H 0.073 0.927 25 H 0.014 0.986 26 H 0.013 0.987 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.240 0.760 30 H 0.194 0.806 31 H 0.215 0.785 32 H 0.253 0.747 33 H 0.249 0.751 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 16.607 -14.826 1.063 22.287 hybrid contribution -1.191 0.954 -0.077 1.528 sum 15.415 -13.872 0.987 20.762 Atomic orbital electron populations 1.70111 1.08133 1.28087 1.51030 1.26022 0.95665 1.03730 0.94484 0.85412 0.78087 0.77564 0.79462 1.18794 1.21694 1.18698 1.21439 0.94110 0.90931 1.51361 0.90327 1.19162 0.94673 0.92945 0.95582 1.21771 0.95184 0.79745 1.02379 1.45906 1.10335 1.04146 1.73032 1.18171 0.93454 0.83324 0.87405 1.21088 0.88798 1.02007 1.10160 1.21805 1.02384 0.88433 0.85750 1.19464 0.91656 0.94837 1.15449 1.17873 0.83506 0.87403 0.75033 1.43461 1.05657 1.14504 1.75256 1.90841 1.69557 1.34522 1.52514 1.20678 0.94623 0.95080 0.87668 1.20421 0.77632 0.96569 1.29767 1.43791 1.04461 0.99095 0.97390 1.94490 1.65590 1.31766 1.46561 1.94526 1.74575 1.32005 1.40349 0.92736 0.98582 0.98716 0.90055 0.89804 0.76002 0.80587 0.78503 0.74745 0.75132 0.83785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.86 13.29 21.45 0.28 -54.57 16 2 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 3 Si 0.97 41.13 29.54 68.60 2.03 43.15 16 4 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 5 H -0.29 -12.47 7.11 99.48 0.71 -11.77 16 6 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 7 C -0.54 -27.59 9.11 25.60 0.23 -27.35 16 8 H 0.08 3.62 7.74 -2.91 -0.02 3.60 16 9 C 0.01 0.67 5.09 29.85 0.15 0.82 16 10 C 0.13 4.46 4.88 86.38 0.42 4.88 16 11 N -0.71 -23.46 5.49 -339.43 -1.86 -25.32 16 12 C 0.29 7.96 6.61 38.47 0.25 8.21 16 13 C -0.20 -3.45 9.29 22.36 0.21 -3.25 16 14 C 0.04 0.41 9.53 22.50 0.21 0.62 16 15 C -0.21 -3.77 5.88 -20.08 -0.12 -3.89 16 16 C 0.58 10.38 8.03 86.69 0.70 11.08 16 17 N -0.82 -5.71 8.82 -175.82 -1.55 -7.26 16 18 O -0.59 -16.64 17.17 -4.04 -0.07 -16.71 16 19 C 0.04 1.02 9.20 22.50 0.21 1.22 16 20 C -0.15 -4.55 6.51 36.47 0.24 -4.32 16 21 N 0.04 1.48 4.29 -46.26 -0.20 1.28 16 22 O -0.17 -5.99 18.94 18.89 0.36 -5.63 16 23 O -0.21 -8.34 16.72 18.88 0.32 -8.03 16 24 H 0.26 14.71 8.31 -92.70 -0.77 13.94 16 25 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 26 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 27 H 0.08 2.51 8.13 -2.39 -0.02 2.49 16 28 H 0.08 2.50 7.70 -2.38 -0.02 2.48 16 29 H 0.40 15.13 6.03 -92.71 -0.56 14.57 16 30 H 0.18 2.37 6.70 -2.91 -0.02 2.35 16 31 H 0.20 -0.03 6.39 -2.91 -0.02 -0.05 16 32 H 0.42 -0.30 6.85 -92.71 -0.63 -0.93 16 33 H 0.42 2.03 8.93 -92.71 -0.83 1.20 16 34 H 0.14 3.92 7.59 -2.91 -0.02 3.89 16 Total: -1.00 -74.48 305.79 1.44 -73.04 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -0.83 Total: 11.58 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: 2.97 Total: -11.54 kcal Atomic # 7 Polarization: -82.55 SS G_CDS: -3.33 Total: -85.88 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: 0.60 Total: -30.36 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.15 kcal Total: -74.48 1.44 -73.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273280777.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.828 kcal (2) G-P(sol) polarization free energy of solvation -74.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds