Wall clock time and date at job start Tue Mar 31 2020 01:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 117.00251 * 2 1 4 4 O 1.20828 * 119.99441 * 0.02562 * 3 2 1 5 5 C 1.50689 * 120.00266 * 179.97438 * 3 2 1 6 6 O 1.42902 * 109.47396 * 180.02562 * 5 3 2 7 7 C 1.35899 * 117.00399 * 180.02562 * 6 5 3 8 8 C 1.38862 * 119.97166 * 0.27696 * 7 6 5 9 9 C 1.37969 * 120.03031 * 180.23211 * 8 7 6 10 10 C 1.39105 * 119.96738 * 359.47189 * 9 8 7 11 11 N 1.39520 * 120.02568 * 180.29853 * 10 9 8 12 12 C 1.34779 * 120.00150 * 33.44130 * 11 10 9 13 13 O 1.21773 * 119.99655 * 5.26996 * 12 11 10 14 14 C 1.41764 * 119.99903 * 185.27786 * 12 11 10 15 15 H 1.07999 * 119.99992 * 359.97438 * 14 12 11 16 16 C 1.40136 * 120.00073 * 179.97438 * 14 12 11 17 17 N 1.30635 * 120.00064 * 0.02562 * 16 14 12 18 18 Si 1.86795 * 120.00216 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46956 * 60.00767 * 18 16 14 20 20 H 1.48503 * 109.47090 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47409 * 300.00437 * 18 16 14 22 22 C 1.39101 * 119.94305 * 0.27114 * 10 9 8 23 23 C 1.37964 * 119.97454 * 0.02562 * 22 10 9 24 24 H 1.09000 * 109.47201 * 299.99250 * 1 2 3 25 25 H 1.08999 * 109.47683 * 59.99761 * 1 2 3 26 26 H 1.09005 * 109.46859 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47107 * 60.00803 * 5 3 2 28 28 H 1.08996 * 109.47762 * 300.00230 * 5 3 2 29 29 H 1.08007 * 119.98640 * 0.02562 * 8 7 6 30 30 H 1.07999 * 120.01765 * 179.74696 * 9 8 7 31 31 H 0.96995 * 119.99556 * 213.43779 * 11 10 9 32 32 H 0.96995 * 120.00029 * 180.02562 * 17 16 14 33 33 H 1.08003 * 120.01318 * 180.02562 * 22 10 9 34 34 H 1.08001 * 119.98867 * 179.97438 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 8 3.9715 2.6452 0.0011 7 6 5.3076 2.8936 0.0011 8 6 6.2095 1.8377 -0.0052 9 6 7.5662 2.0884 -0.0003 10 6 8.0305 3.3997 -0.0003 11 7 9.4022 3.6546 -0.0016 12 6 10.2420 2.8205 -0.6462 13 8 9.7971 1.8993 -1.3068 14 6 11.6432 3.0154 -0.5548 15 1 12.0377 3.8325 0.0310 16 6 12.5165 2.1478 -1.2244 17 7 12.0393 1.1597 -1.9333 18 14 14.3628 2.4050 -1.1046 19 1 14.7843 2.3118 0.3162 20 1 15.0604 1.3612 -1.8978 21 1 14.7113 3.7465 -1.6374 22 6 7.1260 4.4565 0.0006 23 6 5.7698 4.2031 0.0019 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.9563 0.7807 -0.8892 28 1 3.9557 0.7809 0.8907 29 1 5.8487 0.8197 -0.0105 30 1 8.2674 1.2670 -0.0010 31 1 9.7513 4.4322 0.4612 32 1 12.6438 0.5589 -2.3965 33 1 7.4852 5.4750 0.0002 34 1 5.0673 5.0234 0.0030 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274747260.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:34 Heat of formation + Delta-G solvation = -149.219619 kcal Electronic energy + Delta-G solvation = -20447.377643 eV Core-core repulsion = 16924.310986 eV Total energy + Delta-G solvation = -3523.066657 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.79041 -41.06475 -39.92318 -38.06644 -37.45679 -35.06770 -34.34206 -32.05741 -31.03842 -29.85619 -28.27696 -27.57187 -24.12860 -23.57329 -22.10236 -21.59279 -19.57991 -19.39301 -18.37076 -18.06676 -18.00656 -17.71199 -17.44911 -16.49884 -16.37380 -15.79236 -15.29668 -14.98449 -14.67206 -14.62089 -14.40057 -14.11208 -13.98801 -13.49744 -13.35607 -13.07503 -12.97720 -12.76050 -12.66954 -12.27897 -12.05168 -11.92776 -11.89034 -11.57141 -10.98220 -10.48001 -10.01169 -9.74502 -8.43241 -8.36750 -6.99104 0.44014 0.54066 0.96409 1.09082 1.41101 1.43282 1.55906 2.22377 2.37903 2.56885 2.87844 3.07023 3.58025 3.68014 3.90865 4.00574 4.00819 4.08993 4.27882 4.31633 4.42042 4.52846 4.68883 4.70106 5.07497 5.14445 5.18107 5.23757 5.43247 5.56105 5.66157 5.91168 6.20480 6.24920 6.51025 6.57795 6.75855 7.44329 8.41061 8.59244 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.041935 B = 0.002995 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.532199 B = 9347.092875 C = 9916.538306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.354 6.354 3 C 0.471 3.529 4 O -0.524 6.524 5 C 0.061 3.939 6 O -0.313 6.313 7 C 0.084 3.916 8 C -0.178 4.178 9 C -0.116 4.116 10 C 0.131 3.869 11 N -0.696 5.696 12 C 0.531 3.469 13 O -0.614 6.614 14 C -0.567 4.567 15 H 0.090 0.910 16 C 0.032 3.968 17 N -0.801 5.801 18 Si 1.000 3.000 19 H -0.253 1.253 20 H -0.273 1.273 21 H -0.254 1.254 22 C -0.126 4.126 23 C -0.121 4.121 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.138 0.862 27 H 0.125 0.875 28 H 0.131 0.869 29 H 0.150 0.850 30 H 0.103 0.897 31 H 0.406 0.594 32 H 0.279 0.721 33 H 0.153 0.847 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.171 -0.333 5.560 16.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.271 6.271 3 C 0.314 3.686 4 O -0.413 6.413 5 C -0.015 4.015 6 O -0.227 6.227 7 C 0.039 3.961 8 C -0.197 4.197 9 C -0.138 4.138 10 C 0.033 3.967 11 N -0.341 5.341 12 C 0.340 3.660 13 O -0.502 6.502 14 C -0.602 4.602 15 H 0.108 0.892 16 C -0.186 4.186 17 N -0.430 5.430 18 Si 0.819 3.181 19 H -0.177 1.177 20 H -0.198 1.198 21 H -0.178 1.178 22 C -0.147 4.147 23 C -0.140 4.140 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.156 0.844 27 H 0.142 0.858 28 H 0.149 0.851 29 H 0.168 0.832 30 H 0.121 0.879 31 H 0.241 0.759 32 H 0.089 0.911 33 H 0.170 0.830 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -15.777 -0.729 4.981 16.560 hybrid contribution 0.847 0.116 0.037 0.855 sum -14.930 -0.613 5.018 15.763 Atomic orbital electron populations 1.23651 0.73782 1.06160 1.02812 1.86459 1.25599 1.31243 1.83751 1.23246 0.91358 0.81794 0.72162 1.90696 1.67551 1.37479 1.45560 1.22111 0.88039 0.83692 1.07663 1.85969 1.20718 1.25929 1.90129 1.18840 0.80921 0.94342 1.01978 1.21216 0.92267 0.99413 1.06843 1.20996 0.95471 0.96351 1.00949 1.18217 0.85024 0.93906 0.99514 1.43671 1.03793 1.30497 1.56162 1.17376 0.87811 0.81660 0.79176 1.90605 1.78752 1.34999 1.45815 1.20567 0.90685 1.15941 1.32962 0.89164 1.27007 1.06875 0.92788 0.91941 1.70154 1.38928 1.12107 1.21763 0.85027 0.74087 0.79232 0.79745 1.17740 1.19803 1.17771 1.20935 0.91514 0.98621 1.03629 1.20365 0.94975 0.94475 1.04208 0.91638 0.91816 0.84404 0.85776 0.85143 0.83222 0.87856 0.75898 0.91120 0.82951 0.83048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.55 16 2 O -0.35 -6.45 10.57 -51.42 -0.54 -7.00 16 3 C 0.47 10.83 8.03 71.23 0.57 11.41 16 4 O -0.52 -15.75 16.25 28.39 0.46 -15.29 16 5 C 0.06 1.28 5.33 71.23 0.38 1.66 16 6 O -0.31 -9.03 9.67 -73.34 -0.71 -9.74 16 7 C 0.08 2.64 6.69 22.57 0.15 2.79 16 8 C -0.18 -5.98 9.03 22.36 0.20 -5.78 16 9 C -0.12 -4.98 8.64 22.41 0.19 -4.79 16 10 C 0.13 5.44 6.28 38.33 0.24 5.68 16 11 N -0.70 -31.47 5.31 -311.33 -1.65 -33.12 16 12 C 0.53 29.97 7.30 85.11 0.62 30.59 16 13 O -0.61 -39.58 12.56 -4.58 -0.06 -39.63 16 14 C -0.57 -30.85 9.31 23.60 0.22 -30.63 16 15 H 0.09 4.34 7.85 -2.91 -0.02 4.32 16 16 C 0.03 1.72 5.50 85.33 0.47 2.19 16 17 N -0.80 -47.06 11.73 21.85 0.26 -46.81 16 18 Si 1.00 38.98 29.56 68.60 2.03 41.00 16 19 H -0.25 -9.30 7.11 99.48 0.71 -8.59 16 20 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 21 H -0.25 -9.32 7.11 99.48 0.71 -8.61 16 22 C -0.13 -4.15 9.96 22.41 0.22 -3.93 16 23 C -0.12 -3.69 9.98 22.36 0.22 -3.46 16 24 H 0.06 0.81 8.13 -2.39 -0.02 0.79 16 25 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 26 H 0.14 0.75 8.14 -2.38 -0.02 0.73 16 27 H 0.12 2.20 7.64 -2.38 -0.02 2.18 16 28 H 0.13 2.11 7.67 -2.39 -0.02 2.09 16 29 H 0.15 3.98 6.29 -2.91 -0.02 3.97 16 30 H 0.10 5.22 6.41 -2.91 -0.02 5.21 16 31 H 0.41 15.33 8.77 -92.71 -0.81 14.51 16 32 H 0.28 14.78 8.29 -92.71 -0.77 14.01 16 33 H 0.15 4.09 8.06 -2.91 -0.02 4.07 16 34 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -78.45 307.04 4.81 -73.64 By element: Atomic # 1 Polarization: 29.33 SS G_CDS: 0.34 Total: 29.67 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: 4.69 Total: 7.27 kcal Atomic # 7 Polarization: -78.53 SS G_CDS: -1.40 Total: -79.92 kcal Atomic # 8 Polarization: -70.81 SS G_CDS: -0.85 Total: -71.66 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.00 kcal Total: -78.45 4.81 -73.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274747260.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.584 kcal (2) G-P(sol) polarization free energy of solvation -78.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds