Wall clock time and date at job start Tue Mar 31 2020 01:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31937 * 119.57345 * 2 1 4 4 C 1.32352 * 121.63746 * 179.97438 * 3 2 1 5 5 N 1.39399 * 119.69814 * 179.97438 * 4 3 2 6 6 C 1.34776 * 120.00091 * 5.31787 * 5 4 3 7 7 O 1.21280 * 120.00012 * 355.14051 * 6 5 4 8 8 C 1.50703 * 120.00261 * 175.14087 * 6 5 4 9 9 C 1.53001 * 109.47178 * 179.97438 * 8 6 5 10 10 C 1.50694 * 109.47027 * 179.97438 * 9 8 6 11 11 H 1.08000 * 120.00224 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00282 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99704 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00485 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47105 * 59.99674 * 14 12 10 16 16 H 1.48500 * 109.47318 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46700 * 299.99867 * 14 12 10 18 18 C 1.39038 * 120.60457 * 0.02562 * 4 3 2 19 19 C 1.38359 * 119.10288 * 359.74222 * 18 4 3 20 20 C 1.38069 * 119.58125 * 180.02562 * 2 1 3 21 21 N 1.48018 * 120.34084 * 359.97438 * 20 2 1 22 22 O 1.21809 * 119.99755 * 322.37603 * 21 20 2 23 23 O 1.21799 * 120.00386 * 142.10612 * 21 20 2 24 24 H 1.08993 * 109.47146 * 273.06729 * 1 2 3 25 25 H 1.08999 * 109.47119 * 33.06742 * 1 2 3 26 26 H 1.09003 * 109.46625 * 153.06594 * 1 2 3 27 27 H 0.97006 * 120.00302 * 185.31384 * 5 4 3 28 28 H 1.08995 * 109.46802 * 300.00234 * 8 6 5 29 29 H 1.08997 * 109.46930 * 59.99897 * 8 6 5 30 30 H 1.09004 * 109.47017 * 300.00015 * 9 8 6 31 31 H 1.08998 * 109.46770 * 59.99819 * 9 8 6 32 32 H 0.97004 * 119.99764 * 180.02562 * 13 12 10 33 33 H 1.08001 * 120.44858 * 179.97438 * 18 4 3 34 34 H 1.08003 * 120.75806 * 180.27481 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1582 1.1475 0.0000 4 6 3.4808 1.1952 0.0005 5 7 4.1274 2.4301 -0.0001 6 6 3.4103 3.5663 0.1071 7 8 2.1984 3.5200 0.1152 8 6 4.1144 4.8942 0.2168 9 6 3.0773 6.0139 0.3250 10 6 3.7813 7.3417 0.4353 11 1 4.8605 7.3829 0.4293 12 6 3.0478 8.5039 0.5450 13 7 1.7336 8.4538 0.5529 14 14 3.9205 10.1500 0.6811 15 1 4.7585 10.3672 -0.5254 16 1 2.9139 11.2366 0.7875 17 1 4.7828 10.1546 1.8900 18 6 4.2313 0.0247 0.0005 19 6 3.5769 -1.1943 0.0054 20 6 2.1886 -1.2007 -0.0005 21 7 1.4468 -2.4816 -0.0005 22 8 0.4188 -2.5900 0.6438 23 8 1.8615 -3.4257 -0.6488 24 1 -0.3633 0.0550 1.0261 25 1 -0.3633 0.8612 -0.5607 26 1 -0.3633 -0.9162 -0.4655 27 1 5.0935 2.4718 -0.0775 28 1 4.7473 4.8976 1.1041 29 1 4.7295 5.0535 -0.6689 30 1 2.4447 6.0102 -0.5627 31 1 2.4619 5.8546 1.2104 32 1 1.2175 9.2716 0.6297 33 1 5.3105 0.0666 0.0005 34 1 4.1334 -2.1199 0.0100 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291313687.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:13 Heat of formation + Delta-G solvation = 1.555245 kcal Electronic energy + Delta-G solvation = -20682.074875 eV Core-core repulsion = 17197.839057 eV Total energy + Delta-G solvation = -3484.235818 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.44003 -41.10074 -39.20169 -36.71841 -35.42146 -33.69037 -33.52682 -32.21775 -30.97852 -28.71213 -26.85540 -25.45020 -23.64245 -22.89189 -21.83359 -20.17802 -19.47419 -18.85454 -18.00277 -17.92271 -17.15393 -16.33390 -15.77933 -15.60680 -14.72883 -14.67920 -14.57600 -14.30294 -13.58504 -13.38959 -13.20812 -12.70425 -12.47096 -12.29942 -11.71762 -11.38942 -11.36532 -11.18746 -11.13172 -10.99206 -10.72631 -10.36218 -10.35325 -10.13777 -9.78405 -9.30358 -9.17595 -8.89486 -8.43127 -6.06819 -4.12536 -0.24315 0.54822 0.94356 1.22569 2.56285 2.68762 3.27108 3.27606 3.32764 3.33807 3.70202 3.92515 4.17148 4.22545 4.38312 4.84618 4.91520 5.07417 5.17975 5.28369 5.36514 5.41982 5.48578 5.84742 5.94171 5.94674 6.11240 6.29386 6.58083 6.92937 7.49101 7.54779 7.60021 7.67510 7.92236 8.18827 8.34122 8.94670 9.51903 11.03915 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.045096 B = 0.003069 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.750151 B = 9121.124952 C = 9673.644315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.243 3.757 3 N -0.466 5.466 4 C 0.421 3.579 5 N -0.661 5.661 6 C 0.494 3.506 7 O -0.451 6.451 8 C -0.126 4.126 9 C 0.036 3.964 10 C -0.532 4.532 11 H 0.056 0.944 12 C 0.060 3.940 13 N -0.888 5.888 14 Si 0.895 3.105 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.276 1.276 18 C -0.220 4.220 19 C 0.016 3.984 20 C -0.146 4.146 21 N 0.039 4.961 22 O -0.152 6.152 23 O -0.167 6.167 24 H 0.104 0.896 25 H 0.095 0.905 26 H 0.082 0.918 27 H 0.422 0.578 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.025 0.975 31 H 0.025 0.975 32 H 0.263 0.737 33 H 0.159 0.841 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.303 -18.992 -1.303 20.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.101 3.899 3 N -0.183 5.183 4 C 0.187 3.813 5 N -0.307 5.307 6 C 0.282 3.718 7 O -0.317 6.317 8 C -0.166 4.166 9 C -0.001 4.001 10 C -0.570 4.570 11 H 0.075 0.925 12 C -0.143 4.143 13 N -0.526 5.526 14 Si 0.722 3.278 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.244 4.244 19 C -0.010 4.010 20 C -0.234 4.234 21 N 0.559 4.441 22 O -0.369 6.369 23 O -0.381 6.381 24 H 0.122 0.878 25 H 0.113 0.887 26 H 0.101 0.899 27 H 0.260 0.740 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.176 0.824 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 5.176 -17.306 -1.272 18.108 hybrid contribution 1.430 -0.161 0.045 1.440 sum 6.606 -17.468 -1.227 18.715 Atomic orbital electron populations 1.21082 0.86509 1.04561 1.05454 1.21238 0.98363 0.84610 0.85739 1.68108 1.07274 1.25287 1.17625 1.19057 0.88857 0.86658 0.86770 1.44524 1.11764 1.03453 1.70944 1.22232 0.88852 0.85431 0.75273 1.90814 1.13626 1.85754 1.41466 1.21976 1.01572 0.90037 1.03038 1.18939 0.92647 0.89741 0.98794 1.21114 0.92907 0.91287 1.51727 0.92541 1.25023 0.94822 0.99312 0.95116 1.69980 1.04913 1.28294 1.49393 0.86623 0.79263 0.83276 0.78609 1.20195 1.21200 1.20203 1.21495 1.01997 0.89953 1.10963 1.21063 0.90646 0.99900 0.89402 1.21825 0.93426 0.84538 1.23617 1.43332 1.00470 1.02038 0.98293 1.94537 1.12633 1.89145 1.40629 1.94536 1.71789 1.30941 1.40837 0.87806 0.88667 0.89941 0.74048 0.89510 0.89546 0.95613 0.95625 0.92729 0.82366 0.82276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.41 9.12 36.01 0.33 -1.08 16 2 C 0.24 3.25 6.77 -82.61 -0.56 2.69 16 3 N -0.47 -7.18 7.80 -8.60 -0.07 -7.25 16 4 C 0.42 5.25 7.42 -154.71 -1.15 4.10 16 5 N -0.66 -7.88 5.39 -11.42 -0.06 -7.94 16 6 C 0.49 8.46 7.79 -10.98 -0.09 8.37 16 7 O -0.45 -9.81 14.25 5.56 0.08 -9.73 16 8 C -0.13 -2.25 5.64 -27.88 -0.16 -2.41 16 9 C 0.04 0.91 4.26 -27.89 -0.12 0.79 16 10 C -0.53 -14.33 9.11 -34.44 -0.31 -14.65 16 11 H 0.06 1.42 7.74 -52.49 -0.41 1.01 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 14 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 15 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 C -0.22 -1.86 9.94 -39.24 -0.39 -2.25 16 19 C 0.02 0.15 9.81 -39.32 -0.39 -0.24 16 20 C -0.15 -1.75 6.49 -79.79 -0.52 -2.26 16 21 N 0.04 0.50 4.10 34.04 0.14 0.64 16 22 O -0.15 -2.03 16.60 -29.46 -0.49 -2.51 16 23 O -0.17 -2.19 19.01 -29.46 -0.56 -2.75 16 24 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 25 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 26 H 0.08 0.90 6.30 -51.93 -0.33 0.57 16 27 H 0.42 3.04 8.70 -40.82 -0.36 2.68 16 28 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.03 0.71 8.10 -51.93 -0.42 0.29 16 31 H 0.03 0.71 8.10 -51.93 -0.42 0.29 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.16 0.70 8.06 -52.49 -0.42 0.27 16 34 H 0.16 1.01 8.06 -52.48 -0.42 0.58 16 LS Contribution 309.05 15.07 4.66 4.66 Total: -1.00 -34.49 309.05 -7.63 -42.12 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: -3.60 Total: -2.01 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -3.45 Total: -5.35 kcal Atomic # 7 Polarization: -41.08 SS G_CDS: 0.75 Total: -40.33 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -0.97 Total: -15.00 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -34.49 -7.63 -42.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291313687.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.678 kcal (2) G-P(sol) polarization free energy of solvation -34.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds