Wall clock time and date at job start Tue Mar 31 2020 01:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31937 * 119.57345 * 2 1 4 4 C 1.32352 * 121.63746 * 179.97438 * 3 2 1 5 5 N 1.39399 * 119.69814 * 179.97438 * 4 3 2 6 6 C 1.34776 * 120.00091 * 5.31787 * 5 4 3 7 7 O 1.21280 * 120.00012 * 355.14051 * 6 5 4 8 8 C 1.50703 * 120.00261 * 175.14087 * 6 5 4 9 9 C 1.53001 * 109.47178 * 179.97438 * 8 6 5 10 10 C 1.50694 * 109.47027 * 179.97438 * 9 8 6 11 11 H 1.08000 * 120.00224 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00282 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99704 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00485 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47105 * 59.99674 * 14 12 10 16 16 H 1.48500 * 109.47318 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46700 * 299.99867 * 14 12 10 18 18 C 1.39038 * 120.60457 * 0.02562 * 4 3 2 19 19 C 1.38359 * 119.10288 * 359.74222 * 18 4 3 20 20 C 1.38069 * 119.58125 * 180.02562 * 2 1 3 21 21 N 1.48018 * 120.34084 * 359.97438 * 20 2 1 22 22 O 1.21809 * 119.99755 * 322.37603 * 21 20 2 23 23 O 1.21799 * 120.00386 * 142.10612 * 21 20 2 24 24 H 1.08993 * 109.47146 * 273.06729 * 1 2 3 25 25 H 1.08999 * 109.47119 * 33.06742 * 1 2 3 26 26 H 1.09003 * 109.46625 * 153.06594 * 1 2 3 27 27 H 0.97006 * 120.00302 * 185.31384 * 5 4 3 28 28 H 1.08995 * 109.46802 * 300.00234 * 8 6 5 29 29 H 1.08997 * 109.46930 * 59.99897 * 8 6 5 30 30 H 1.09004 * 109.47017 * 300.00015 * 9 8 6 31 31 H 1.08998 * 109.46770 * 59.99819 * 9 8 6 32 32 H 0.97004 * 119.99764 * 180.02562 * 13 12 10 33 33 H 1.08001 * 120.44858 * 179.97438 * 18 4 3 34 34 H 1.08003 * 120.75806 * 180.27481 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1582 1.1475 0.0000 4 6 3.4808 1.1952 0.0005 5 7 4.1274 2.4301 -0.0001 6 6 3.4103 3.5663 0.1071 7 8 2.1984 3.5200 0.1152 8 6 4.1144 4.8942 0.2168 9 6 3.0773 6.0139 0.3250 10 6 3.7813 7.3417 0.4353 11 1 4.8605 7.3829 0.4293 12 6 3.0478 8.5039 0.5450 13 7 1.7336 8.4538 0.5529 14 14 3.9205 10.1500 0.6811 15 1 4.7585 10.3672 -0.5254 16 1 2.9139 11.2366 0.7875 17 1 4.7828 10.1546 1.8900 18 6 4.2313 0.0247 0.0005 19 6 3.5769 -1.1943 0.0054 20 6 2.1886 -1.2007 -0.0005 21 7 1.4468 -2.4816 -0.0005 22 8 0.4188 -2.5900 0.6438 23 8 1.8615 -3.4257 -0.6488 24 1 -0.3633 0.0550 1.0261 25 1 -0.3633 0.8612 -0.5607 26 1 -0.3633 -0.9162 -0.4655 27 1 5.0935 2.4718 -0.0775 28 1 4.7473 4.8976 1.1041 29 1 4.7295 5.0535 -0.6689 30 1 2.4447 6.0102 -0.5627 31 1 2.4619 5.8546 1.2104 32 1 1.2175 9.2716 0.6297 33 1 5.3105 0.0666 0.0005 34 1 4.1334 -2.1199 0.0100 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291313687.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:12 Heat of formation + Delta-G solvation = -21.312781 kcal Electronic energy + Delta-G solvation = -20683.066507 eV Core-core repulsion = 17197.839057 eV Total energy + Delta-G solvation = -3485.227450 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.41294 -42.11521 -40.42941 -37.72359 -36.56818 -35.59288 -34.43019 -33.48842 -32.61016 -29.64633 -28.33781 -26.84927 -24.75717 -23.94749 -23.30499 -21.49632 -20.43162 -19.86694 -19.06606 -18.99265 -18.65740 -17.75874 -16.97362 -16.87623 -16.48934 -15.85963 -15.54741 -15.21827 -14.90164 -14.49503 -14.31358 -14.20914 -13.78020 -13.64946 -13.29550 -12.79666 -12.73782 -12.53815 -12.36970 -12.22545 -12.14083 -11.93287 -11.68874 -11.49283 -11.29823 -11.27102 -10.56766 -10.45299 -9.84014 -8.19176 -6.33238 -1.21486 -0.25348 -0.03182 0.27255 1.42331 1.46164 1.47270 1.53774 1.59429 2.29824 2.41888 2.77166 3.07481 3.14630 3.38363 3.43482 3.83571 4.11991 4.17514 4.32085 4.42901 4.44492 4.51659 4.55161 4.68806 4.87680 5.02411 5.12043 5.34862 5.49092 5.59936 5.83366 5.91730 6.14555 6.46569 6.58813 6.85400 7.12096 7.37583 8.93099 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.045096 B = 0.003069 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.750151 B = 9121.124952 C = 9673.644315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.221 3.779 3 N -0.513 5.513 4 C 0.395 3.605 5 N -0.639 5.639 6 C 0.501 3.499 7 O -0.512 6.512 8 C -0.114 4.114 9 C 0.039 3.961 10 C -0.543 4.543 11 H 0.080 0.920 12 C -0.007 4.007 13 N -0.938 5.938 14 Si 0.972 3.028 15 H -0.262 1.262 16 H -0.291 1.291 17 H -0.262 1.262 18 C -0.182 4.182 19 C 0.021 3.979 20 C -0.148 4.148 21 N 0.040 4.960 22 O -0.175 6.175 23 O -0.160 6.160 24 H 0.105 0.895 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.447 0.553 28 H 0.116 0.884 29 H 0.117 0.883 30 H -0.017 1.017 31 H -0.018 1.018 32 H 0.262 0.738 33 H 0.213 0.787 34 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.414 -20.029 -1.416 22.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.080 3.920 3 N -0.231 5.231 4 C 0.162 3.838 5 N -0.288 5.288 6 C 0.290 3.710 7 O -0.382 6.382 8 C -0.153 4.153 9 C 0.002 3.998 10 C -0.580 4.580 11 H 0.098 0.902 12 C -0.205 4.205 13 N -0.578 5.578 14 Si 0.796 3.204 15 H -0.186 1.186 16 H -0.217 1.217 17 H -0.186 1.186 18 C -0.206 4.206 19 C -0.005 4.005 20 C -0.236 4.236 21 N 0.558 4.442 22 O -0.388 6.388 23 O -0.377 6.377 24 H 0.123 0.877 25 H 0.100 0.900 26 H 0.106 0.894 27 H 0.290 0.710 28 H 0.134 0.866 29 H 0.135 0.865 30 H 0.001 0.999 31 H 0.001 0.999 32 H 0.071 0.929 33 H 0.230 0.770 34 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 9.327 -18.389 -1.366 20.665 hybrid contribution 0.184 0.045 0.049 0.196 sum 9.512 -18.344 -1.317 20.706 Atomic orbital electron populations 1.21051 0.86729 1.04183 1.05423 1.21234 0.98661 0.84948 0.87173 1.67939 1.09599 1.26691 1.18824 1.19401 0.88533 0.87725 0.88130 1.43929 1.12623 1.02099 1.70108 1.21954 0.88032 0.86640 0.74415 1.90811 1.16108 1.86757 1.44544 1.21706 0.99651 0.88143 1.05826 1.18716 0.93587 0.92687 0.94830 1.21681 0.94140 0.91898 1.50331 0.90174 1.26126 0.95458 1.04099 0.94775 1.70172 1.07078 1.29326 1.51223 0.85399 0.77965 0.77550 0.79497 1.18615 1.21706 1.18642 1.21950 1.04091 0.87576 1.06952 1.21582 0.89270 1.01678 0.87951 1.21989 0.94654 0.83391 1.23522 1.43474 1.00395 1.02311 0.98006 1.94548 1.13290 1.89486 1.41452 1.94516 1.71542 1.31314 1.40370 0.87664 0.89967 0.89352 0.71031 0.86589 0.86525 0.99857 0.99914 0.92920 0.77000 0.78608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.97 9.12 71.24 0.65 -2.32 16 2 C 0.22 6.00 6.77 42.50 0.29 6.29 16 3 N -0.51 -15.98 7.80 -181.12 -1.41 -17.40 16 4 C 0.40 9.02 7.42 132.92 0.99 10.00 16 5 N -0.64 -13.64 5.39 -308.45 -1.66 -15.31 16 6 C 0.50 17.02 7.79 87.66 0.68 17.70 16 7 O -0.51 -23.45 14.25 -3.03 -0.04 -23.49 16 8 C -0.11 -3.91 5.64 29.85 0.17 -3.75 16 9 C 0.04 2.06 4.26 29.85 0.13 2.18 16 10 C -0.54 -29.24 9.11 25.60 0.23 -29.00 16 11 H 0.08 3.84 7.74 -2.91 -0.02 3.82 16 12 C -0.01 -0.39 5.46 84.65 0.46 0.07 16 13 N -0.94 -58.26 13.29 21.45 0.28 -57.97 16 14 Si 0.97 42.79 29.54 68.60 2.03 44.82 16 15 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 16 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 17 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 18 C -0.18 -2.23 9.94 22.49 0.22 -2.00 16 19 C 0.02 0.30 9.81 22.44 0.22 0.52 16 20 C -0.15 -3.30 6.49 36.48 0.24 -3.06 16 21 N 0.04 0.99 4.10 -46.22 -0.19 0.80 16 22 O -0.18 -4.67 16.60 18.88 0.31 -4.35 16 23 O -0.16 -3.89 19.01 18.89 0.36 -3.53 16 24 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 25 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.09 2.05 6.30 -2.39 -0.02 2.04 16 27 H 0.45 4.46 8.70 -92.70 -0.81 3.65 16 28 H 0.12 3.33 8.14 -2.39 -0.02 3.31 16 29 H 0.12 3.32 8.14 -2.39 -0.02 3.30 16 30 H -0.02 -1.02 8.10 -2.38 -0.02 -1.04 16 31 H -0.02 -1.05 8.10 -2.39 -0.02 -1.07 16 32 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 33 H 0.21 0.28 8.06 -2.91 -0.02 0.26 16 34 H 0.20 1.37 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -81.63 309.05 4.30 -77.33 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: 0.34 Total: 2.48 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: 4.28 Total: -3.37 kcal Atomic # 7 Polarization: -86.90 SS G_CDS: -2.98 Total: -89.88 kcal Atomic # 8 Polarization: -32.01 SS G_CDS: 0.63 Total: -31.38 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -81.63 4.30 -77.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291313687.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.017 kcal (2) G-P(sol) polarization free energy of solvation -81.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds