Wall clock time and date at job start Tue Mar 31 2020 00:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45203 * 109.46730 * 2 1 4 4 C 1.34757 * 116.99838 * 180.02562 * 3 2 1 5 5 O 1.21505 * 119.99643 * 359.97438 * 4 3 2 6 6 C 1.47422 * 119.99958 * 179.97438 * 4 3 2 7 7 C 1.39630 * 120.15906 * 0.02829 * 6 4 3 8 8 C 1.38623 * 119.81623 * 179.97438 * 7 6 4 9 9 N 1.39575 * 119.93666 * 179.97438 * 8 7 6 10 10 C 1.34777 * 120.00077 * 33.53754 * 9 8 7 11 11 O 1.21770 * 119.99787 * 5.27868 * 10 9 8 12 12 C 1.41806 * 119.99997 * 185.28018 * 10 9 8 13 13 H 1.07996 * 120.00081 * 359.97438 * 12 10 9 14 14 C 1.40138 * 119.99664 * 180.02562 * 12 10 9 15 15 N 1.30627 * 119.99899 * 359.97438 * 14 12 10 16 16 Si 1.86804 * 119.99601 * 180.02562 * 14 12 10 17 17 H 1.48492 * 109.47231 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47127 * 120.00062 * 16 14 12 19 19 H 1.48506 * 109.46589 * 239.99757 * 16 14 12 20 20 C 1.39340 * 120.13168 * 0.02562 * 8 7 6 21 21 C 1.37883 * 120.31978 * 359.67886 * 20 8 7 22 22 C 1.38830 * 120.18258 * 0.59874 * 21 20 8 23 23 O 1.35652 * 120.06509 * 179.69675 * 22 21 20 24 24 H 1.08997 * 109.47341 * 300.00364 * 1 2 3 25 25 H 1.08996 * 109.47157 * 60.00344 * 1 2 3 26 26 H 1.09000 * 109.46717 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47106 * 240.00013 * 2 1 3 28 28 H 1.09004 * 109.47081 * 119.99338 * 2 1 3 29 29 H 1.08005 * 120.09008 * 359.94764 * 7 6 4 30 30 H 0.97002 * 120.00059 * 213.54065 * 9 8 7 31 31 H 0.97005 * 119.99387 * 180.02562 * 15 14 12 32 32 H 1.07992 * 119.84291 * 179.97438 * 20 8 7 33 33 H 1.08003 * 119.90691 * 180.30181 * 21 20 8 34 34 H 0.96705 * 114.00158 * 269.72655 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3499 1.5456 -0.0005 5 8 4.0900 0.5820 -0.0005 6 6 3.9133 2.9080 -0.0011 7 6 3.0658 4.0176 -0.0006 8 6 3.6032 5.2954 -0.0006 9 7 2.7583 6.4064 -0.0006 10 6 1.5760 6.3539 0.6443 11 8 1.2868 5.3739 1.3066 12 6 0.6690 7.4400 0.5516 13 1 0.9257 8.3093 -0.0354 14 6 -0.5601 7.3855 1.2227 15 7 -0.8703 6.3342 1.9331 16 14 -1.7553 8.8159 1.0999 17 1 -1.1711 9.8768 0.2407 18 1 -3.0321 8.3446 0.5060 19 1 -2.0126 9.3636 2.4561 20 6 4.9852 5.4730 -0.0018 21 6 5.8273 4.3811 0.0038 22 6 5.3033 3.0955 -0.0019 23 8 6.1340 2.0231 -0.0027 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8901 29 1 1.9944 3.8807 -0.0005 30 1 3.0220 7.2163 -0.4647 31 1 -1.7213 6.2964 2.3973 32 1 5.3989 6.4705 -0.0022 33 1 6.8975 4.5265 0.0078 34 1 6.3743 1.7123 -0.8863 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294336158.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:18 Heat of formation + Delta-G solvation = -140.420564 kcal Electronic energy + Delta-G solvation = -21382.755558 eV Core-core repulsion = 17860.070456 eV Total energy + Delta-G solvation = -3522.685102 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.35963 -39.15081 -37.90124 -36.14556 -35.87428 -33.25619 -32.46066 -31.76292 -30.66816 -28.50621 -26.27712 -24.48975 -22.84886 -22.20220 -20.85913 -19.80164 -18.09922 -17.94866 -17.17545 -16.56070 -16.24648 -15.66248 -15.25733 -15.00614 -14.86506 -14.10948 -13.83313 -13.60266 -13.18436 -12.80408 -12.72626 -12.60433 -12.27364 -11.86995 -11.76146 -11.57392 -11.39407 -11.30150 -11.14190 -10.70924 -10.60804 -10.36279 -10.28783 -9.87905 -9.35096 -8.93561 -8.74304 -7.81709 -7.12714 -6.43386 -4.96727 1.03882 1.72858 2.89238 2.96875 3.01445 3.09717 3.13935 3.92287 4.00283 4.38658 4.46180 4.57782 4.96089 5.07260 5.14313 5.20209 5.37917 5.51567 5.62483 5.77761 5.83045 5.91983 5.92890 6.14792 6.27732 6.40142 6.61620 6.69781 6.83695 7.03456 7.18751 7.74758 7.90172 7.97555 8.06947 8.12912 8.74610 9.18543 10.31505 10.50944 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.016605 B = 0.005489 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.791565 B = 5100.039704 C = 6642.883043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.065 3.935 3 O -0.346 6.346 4 C 0.515 3.485 5 O -0.506 6.506 6 C -0.139 4.139 7 C -0.058 4.058 8 C 0.175 3.825 9 N -0.700 5.700 10 C 0.540 3.460 11 O -0.563 6.563 12 C -0.536 4.536 13 H 0.071 0.929 14 C 0.087 3.913 15 N -0.744 5.744 16 Si 0.913 3.087 17 H -0.262 1.262 18 H -0.274 1.274 19 H -0.274 1.274 20 C -0.128 4.128 21 C -0.135 4.135 22 C 0.117 3.883 23 O -0.481 6.481 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.159 0.841 30 H 0.394 0.606 31 H 0.273 0.727 32 H 0.129 0.871 33 H 0.132 0.868 34 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.026 -4.691 -6.480 10.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.009 4.009 3 O -0.262 6.262 4 C 0.361 3.639 5 O -0.395 6.395 6 C -0.141 4.141 7 C -0.079 4.079 8 C 0.075 3.925 9 N -0.344 5.344 10 C 0.349 3.651 11 O -0.446 6.446 12 C -0.571 4.571 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.372 5.372 16 Si 0.737 3.263 17 H -0.186 1.186 18 H -0.199 1.199 19 H -0.199 1.199 20 C -0.150 4.150 21 C -0.154 4.154 22 C 0.070 3.930 23 O -0.290 6.290 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.176 0.824 30 H 0.228 0.772 31 H 0.084 0.916 32 H 0.147 0.853 33 H 0.150 0.850 34 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 5.701 -5.689 -5.255 9.616 hybrid contribution -0.360 0.960 -0.667 1.224 sum 5.340 -4.729 -5.922 9.271 Atomic orbital electron populations 1.21803 0.92632 1.02460 1.04166 1.22965 0.95459 0.80405 1.02073 1.86687 1.23792 1.31742 1.84013 1.21017 0.80526 0.89707 0.72690 1.90797 1.60294 1.42268 1.46181 1.19409 0.93006 0.90523 1.11174 1.21677 1.01756 0.89559 0.94930 1.17894 0.89581 0.88811 0.96182 1.44275 1.20762 1.13089 1.56258 1.17136 0.79226 0.89295 0.79398 1.90686 1.75124 1.35269 1.43542 1.20077 1.01316 1.03725 1.32027 0.91047 1.25767 0.98319 0.96336 0.93163 1.70018 1.20593 1.26368 1.20174 0.86226 0.79991 0.81269 0.78833 1.18553 1.19890 1.19927 1.21026 0.91879 0.99017 1.03031 1.20973 0.99961 0.90804 1.03679 1.18247 0.86611 0.86794 1.01305 1.84787 1.65459 1.46013 1.32776 0.91016 0.91402 0.90567 0.91602 0.91453 0.82398 0.77234 0.91609 0.85346 0.85049 0.76104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 10.29 37.16 0.38 -1.50 16 2 C 0.06 0.94 6.20 37.16 0.23 1.17 16 3 O -0.35 -6.51 9.47 -40.65 -0.38 -6.89 16 4 C 0.51 10.02 7.89 34.47 0.27 10.29 16 5 O -0.51 -10.01 14.94 -26.60 -0.40 -10.40 16 6 C -0.14 -2.69 5.88 -104.88 -0.62 -3.31 16 7 C -0.06 -1.23 8.21 -38.92 -0.32 -1.55 16 8 C 0.17 3.47 6.27 -83.78 -0.53 2.94 16 9 N -0.70 -14.83 5.31 -12.43 -0.07 -14.90 16 10 C 0.54 14.37 7.30 -14.90 -0.11 14.26 16 11 O -0.56 -17.04 12.56 5.13 0.06 -16.98 16 12 C -0.54 -14.03 9.32 -37.51 -0.35 -14.38 16 13 H 0.07 1.69 7.85 -52.49 -0.41 1.28 16 14 C 0.09 2.27 5.50 -17.35 -0.10 2.18 16 15 N -0.74 -20.90 11.73 55.55 0.65 -20.25 16 16 Si 0.91 18.75 29.56 -169.99 -5.02 13.73 16 17 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 18 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 19 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 20 C -0.13 -2.03 9.95 -39.30 -0.39 -2.42 16 21 C -0.14 -2.02 9.97 -39.49 -0.39 -2.41 16 22 C 0.12 2.00 6.72 -38.60 -0.26 1.74 16 23 O -0.48 -7.59 11.56 -40.58 -0.47 -8.06 16 24 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.16 3.85 5.96 -52.48 -0.31 3.54 16 30 H 0.39 6.95 8.77 -40.82 -0.36 6.59 16 31 H 0.27 6.91 8.29 -40.82 -0.34 6.57 16 32 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 34 H 0.38 4.30 9.06 45.56 0.41 4.71 16 LS Contribution 306.70 15.07 4.62 4.62 Total: -1.00 -33.96 306.70 -5.94 -39.91 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -2.76 Total: 12.22 kcal Atomic # 6 Polarization: 9.19 SS G_CDS: -2.17 Total: 7.01 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: 0.59 Total: -35.15 kcal Atomic # 8 Polarization: -41.14 SS G_CDS: -1.19 Total: -42.33 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.02 Total: 13.73 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.96 -5.94 -39.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294336158.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.514 kcal (2) G-P(sol) polarization free energy of solvation -33.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds