Wall clock time and date at job start Tue Mar 31 2020 00:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45203 * 109.46730 * 2 1 4 4 C 1.34757 * 116.99838 * 180.02562 * 3 2 1 5 5 O 1.21505 * 119.99643 * 359.97438 * 4 3 2 6 6 C 1.47422 * 119.99958 * 179.97438 * 4 3 2 7 7 C 1.39630 * 120.15906 * 0.02829 * 6 4 3 8 8 C 1.38623 * 119.81623 * 179.97438 * 7 6 4 9 9 N 1.39575 * 119.93666 * 179.97438 * 8 7 6 10 10 C 1.34777 * 120.00077 * 33.53754 * 9 8 7 11 11 O 1.21770 * 119.99787 * 5.27868 * 10 9 8 12 12 C 1.41806 * 119.99997 * 185.28018 * 10 9 8 13 13 H 1.07996 * 120.00081 * 359.97438 * 12 10 9 14 14 C 1.40138 * 119.99664 * 180.02562 * 12 10 9 15 15 N 1.30627 * 119.99899 * 359.97438 * 14 12 10 16 16 Si 1.86804 * 119.99601 * 180.02562 * 14 12 10 17 17 H 1.48492 * 109.47231 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47127 * 120.00062 * 16 14 12 19 19 H 1.48506 * 109.46589 * 239.99757 * 16 14 12 20 20 C 1.39340 * 120.13168 * 0.02562 * 8 7 6 21 21 C 1.37883 * 120.31978 * 359.67886 * 20 8 7 22 22 C 1.38830 * 120.18258 * 0.59874 * 21 20 8 23 23 O 1.35652 * 120.06509 * 179.69675 * 22 21 20 24 24 H 1.08997 * 109.47341 * 300.00364 * 1 2 3 25 25 H 1.08996 * 109.47157 * 60.00344 * 1 2 3 26 26 H 1.09000 * 109.46717 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47106 * 240.00013 * 2 1 3 28 28 H 1.09004 * 109.47081 * 119.99338 * 2 1 3 29 29 H 1.08005 * 120.09008 * 359.94764 * 7 6 4 30 30 H 0.97002 * 120.00059 * 213.54065 * 9 8 7 31 31 H 0.97005 * 119.99387 * 180.02562 * 15 14 12 32 32 H 1.07992 * 119.84291 * 179.97438 * 20 8 7 33 33 H 1.08003 * 119.90691 * 180.30181 * 21 20 8 34 34 H 0.96705 * 114.00158 * 269.72655 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3499 1.5456 -0.0005 5 8 4.0900 0.5820 -0.0005 6 6 3.9133 2.9080 -0.0011 7 6 3.0658 4.0176 -0.0006 8 6 3.6032 5.2954 -0.0006 9 7 2.7583 6.4064 -0.0006 10 6 1.5760 6.3539 0.6443 11 8 1.2868 5.3739 1.3066 12 6 0.6690 7.4400 0.5516 13 1 0.9257 8.3093 -0.0354 14 6 -0.5601 7.3855 1.2227 15 7 -0.8703 6.3342 1.9331 16 14 -1.7553 8.8159 1.0999 17 1 -1.1711 9.8768 0.2407 18 1 -3.0321 8.3446 0.5060 19 1 -2.0126 9.3636 2.4561 20 6 4.9852 5.4730 -0.0018 21 6 5.8273 4.3811 0.0038 22 6 5.3033 3.0955 -0.0019 23 8 6.1340 2.0231 -0.0027 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8901 29 1 1.9944 3.8807 -0.0005 30 1 3.0220 7.2163 -0.4647 31 1 -1.7213 6.2964 2.3973 32 1 5.3989 6.4705 -0.0022 33 1 6.8975 4.5265 0.0078 34 1 6.3743 1.7123 -0.8863 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294336158.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:18 Heat of formation + Delta-G solvation = -165.191365 kcal Electronic energy + Delta-G solvation = -21383.829701 eV Core-core repulsion = 17860.070456 eV Total energy + Delta-G solvation = -3523.759244 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.80939 -40.69171 -39.50065 -37.68459 -37.33494 -35.02673 -34.37896 -33.03972 -31.97097 -30.17159 -28.09956 -25.85851 -24.22603 -23.61929 -22.36608 -21.47622 -19.71306 -19.34723 -18.79516 -18.08567 -17.62483 -17.57163 -16.68628 -16.39634 -16.35764 -15.78419 -15.16754 -15.04327 -14.71007 -14.60349 -14.23229 -13.78081 -13.59698 -13.37115 -13.23425 -13.01321 -12.92677 -12.77302 -12.64024 -12.55189 -12.05299 -11.97604 -11.58021 -11.29188 -11.06464 -10.76434 -10.16132 -9.82454 -8.73616 -8.37460 -7.00276 -0.39034 0.32439 1.38325 1.41670 1.45462 1.59474 1.64534 2.21648 2.35180 2.70414 2.91454 3.24545 3.58605 3.68164 3.93932 3.94130 4.00687 4.23564 4.27285 4.36476 4.55047 4.72566 4.83611 4.91141 5.03190 5.06471 5.23819 5.25519 5.33158 5.41481 5.59924 5.89570 6.17728 6.31193 6.65621 6.75720 6.84319 7.40304 8.39510 8.58039 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.016605 B = 0.005489 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.791565 B = 5100.039704 C = 6642.883043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.055 3.945 3 O -0.369 6.369 4 C 0.511 3.489 5 O -0.515 6.515 6 C -0.161 4.161 7 C -0.080 4.080 8 C 0.143 3.857 9 N -0.692 5.692 10 C 0.527 3.473 11 O -0.612 6.612 12 C -0.562 4.562 13 H 0.094 0.906 14 C 0.032 3.968 15 N -0.800 5.800 16 Si 1.000 3.000 17 H -0.244 1.244 18 H -0.269 1.269 19 H -0.269 1.269 20 C -0.101 4.101 21 C -0.119 4.119 22 C 0.131 3.869 23 O -0.487 6.487 24 H 0.052 0.948 25 H 0.063 0.937 26 H 0.114 0.886 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.112 0.888 30 H 0.411 0.589 31 H 0.278 0.722 32 H 0.169 0.831 33 H 0.179 0.821 34 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.804 -3.366 -7.394 11.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.018 4.018 3 O -0.286 6.286 4 C 0.358 3.642 5 O -0.406 6.406 6 C -0.164 4.164 7 C -0.102 4.102 8 C 0.045 3.955 9 N -0.337 5.337 10 C 0.337 3.663 11 O -0.499 6.499 12 C -0.596 4.596 13 H 0.112 0.888 14 C -0.187 4.187 15 N -0.429 5.429 16 Si 0.819 3.181 17 H -0.166 1.166 18 H -0.194 1.194 19 H -0.194 1.194 20 C -0.122 4.122 21 C -0.138 4.138 22 C 0.084 3.916 23 O -0.300 6.300 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.132 0.868 27 H 0.100 0.900 28 H 0.088 0.912 29 H 0.130 0.870 30 H 0.247 0.753 31 H 0.088 0.912 32 H 0.186 0.814 33 H 0.196 0.804 34 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 7.540 -4.367 -6.222 10.707 hybrid contribution -0.756 0.402 -0.424 0.956 sum 6.784 -3.965 -6.646 10.291 Atomic orbital electron populations 1.21840 0.91050 1.04538 1.03049 1.23333 0.96775 0.78737 1.02972 1.86699 1.23774 1.34333 1.83785 1.21157 0.80704 0.89893 0.72494 1.90761 1.60393 1.42431 1.47018 1.19579 0.94289 0.89873 1.12612 1.21299 0.99908 0.91361 0.97653 1.18134 0.91238 0.87611 0.98497 1.43726 1.19760 1.14281 1.55982 1.17471 0.80749 0.88835 0.79286 1.90652 1.76708 1.36866 1.45697 1.20619 1.01968 1.04423 1.32638 0.88806 1.27017 1.00307 0.99352 0.91984 1.70182 1.21645 1.29315 1.21729 0.84931 0.76827 0.77170 0.79170 1.16627 1.19415 1.19395 1.21398 0.89688 1.01377 0.99689 1.21421 1.02034 0.89096 1.01208 1.18459 0.85655 0.88184 0.99305 1.84722 1.64668 1.45793 1.34788 0.92840 0.91761 0.86796 0.89972 0.91185 0.86956 0.75264 0.91182 0.81374 0.80404 0.73457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 10.29 71.98 0.74 -2.98 16 2 C 0.05 1.64 6.20 71.98 0.45 2.09 16 3 O -0.37 -14.78 9.47 -56.68 -0.54 -15.32 16 4 C 0.51 20.57 7.89 70.24 0.55 21.12 16 5 O -0.51 -20.46 14.94 26.83 0.40 -20.06 16 6 C -0.16 -6.37 5.88 -20.03 -0.12 -6.49 16 7 C -0.08 -3.60 8.21 22.70 0.19 -3.41 16 8 C 0.14 5.69 6.27 38.27 0.24 5.93 16 9 N -0.69 -29.68 5.31 -311.44 -1.65 -31.33 16 10 C 0.53 29.16 7.30 85.12 0.62 29.78 16 11 O -0.61 -39.42 12.56 -4.57 -0.06 -39.48 16 12 C -0.56 -29.88 9.32 23.61 0.22 -29.66 16 13 H 0.09 4.37 7.85 -2.91 -0.02 4.35 16 14 C 0.03 1.67 5.50 85.33 0.47 2.14 16 15 N -0.80 -46.93 11.73 21.85 0.26 -46.68 16 16 Si 1.00 38.51 29.56 68.60 2.03 40.54 16 17 H -0.24 -8.56 7.11 99.48 0.71 -7.85 16 18 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 19 H -0.27 -10.05 7.11 99.48 0.71 -9.35 16 20 C -0.10 -2.88 9.95 22.45 0.22 -2.66 16 21 C -0.12 -3.07 9.97 22.33 0.22 -2.85 16 22 C 0.13 4.19 6.72 22.90 0.15 4.35 16 23 O -0.49 -14.05 11.56 -68.71 -0.79 -14.85 16 24 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.11 6.04 5.96 -2.91 -0.02 6.02 16 30 H 0.41 14.18 8.77 -92.71 -0.81 13.37 16 31 H 0.28 14.70 8.29 -92.70 -0.77 13.93 16 32 H 0.17 3.50 8.06 -2.91 -0.02 3.48 16 33 H 0.18 3.06 8.06 -2.91 -0.02 3.03 16 34 H 0.41 7.89 9.06 -74.05 -0.67 7.22 16 Total: -1.00 -79.03 306.70 3.28 -75.75 By element: Atomic # 1 Polarization: 34.38 SS G_CDS: -0.32 Total: 34.06 kcal Atomic # 6 Polarization: 13.41 SS G_CDS: 3.96 Total: 17.37 kcal Atomic # 7 Polarization: -76.61 SS G_CDS: -1.40 Total: -78.01 kcal Atomic # 8 Polarization: -88.72 SS G_CDS: -0.99 Total: -89.71 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 2.03 Total: 40.54 kcal Total: -79.03 3.28 -75.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294336158.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.445 kcal (2) G-P(sol) polarization free energy of solvation -79.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds