Wall clock time and date at job start Tue Mar 31 2020 01:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34230 * 117.00018 * 2 1 4 4 O 1.20826 * 120.00015 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00046 * 180.02562 * 3 2 1 6 6 O 1.42903 * 109.46878 * 179.97438 * 5 3 2 7 7 C 1.35913 * 116.99828 * 179.97438 * 6 5 3 8 8 C 1.38875 * 119.98149 * 359.72828 * 7 6 5 9 9 C 1.38258 * 120.25158 * 179.72191 * 8 7 6 10 10 C 1.37985 * 120.21007 * 0.55068 * 9 8 7 11 11 C 1.39631 * 119.96359 * 359.72590 * 10 9 8 12 12 C 1.47735 * 120.13049 * 180.02562 * 11 10 9 13 13 O 1.21582 * 120.00506 * 179.97438 * 12 11 10 14 14 N 1.34785 * 119.99671 * 359.97438 * 12 11 10 15 15 C 1.36870 * 119.99762 * 180.02562 * 14 12 11 16 16 H 1.08001 * 120.00268 * 0.02562 * 15 14 12 17 17 C 1.39047 * 119.99821 * 180.02562 * 15 14 12 18 18 N 1.31365 * 119.99969 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00077 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.46923 * 59.99765 * 19 17 15 21 21 H 1.48507 * 109.46963 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46764 * 299.99639 * 19 17 15 23 23 C 1.38428 * 119.98231 * 180.02562 * 7 6 5 24 24 H 1.09001 * 109.47630 * 300.00318 * 1 2 3 25 25 H 1.08998 * 109.47321 * 60.00129 * 1 2 3 26 26 H 1.09002 * 109.47011 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47060 * 299.99765 * 5 3 2 28 28 H 1.09001 * 109.47380 * 59.99853 * 5 3 2 29 29 H 1.08002 * 119.87457 * 0.02562 * 8 7 6 30 30 H 1.07998 * 119.89437 * 180.27796 * 9 8 7 31 31 H 1.08001 * 120.01788 * 179.74406 * 10 9 8 32 32 H 0.97003 * 119.99591 * 0.02562 * 14 12 11 33 33 H 0.97001 * 120.00241 * 180.02562 * 18 17 15 34 34 H 1.08003 * 120.10809 * 359.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 8 3.9714 2.6453 -0.0011 7 6 5.3076 2.8937 -0.0011 8 6 6.2097 1.8378 0.0051 9 6 7.5702 2.0840 -0.0007 10 6 8.0411 3.3811 -0.0012 11 6 7.1420 4.4494 -0.0016 12 6 7.6420 5.8395 -0.0027 13 8 6.8571 6.7680 -0.0035 14 7 8.9685 6.0785 -0.0027 15 6 9.4318 7.3664 -0.0032 16 1 8.7346 8.1911 -0.0031 17 6 10.8003 7.6129 -0.0038 18 7 11.6484 6.6097 -0.0044 19 14 11.4327 9.3706 -0.0037 20 1 10.9421 10.0730 1.2091 21 1 12.9178 9.3623 -0.0038 22 1 10.9410 10.0736 -1.2159 23 6 5.7686 4.1989 -0.0010 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.9563 0.7806 0.8892 28 1 3.9557 0.7809 -0.8908 29 1 5.8472 0.8205 0.0094 30 1 8.2666 1.2586 -0.0004 31 1 9.1044 3.5698 -0.0015 32 1 9.5947 5.3377 -0.0024 33 1 12.6031 6.7816 -0.0045 34 1 5.0681 5.0209 -0.0014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299712413.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:31 Heat of formation + Delta-G solvation = -126.505846 kcal Electronic energy + Delta-G solvation = -20325.204934 eV Core-core repulsion = 16803.123220 eV Total energy + Delta-G solvation = -3522.081714 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.91410 -39.91924 -38.45116 -36.94336 -36.40645 -34.12439 -31.56128 -31.02049 -30.28709 -29.11582 -27.21836 -25.39617 -23.12479 -22.14501 -21.47479 -19.66942 -18.49935 -18.13692 -17.24134 -17.21038 -17.17033 -15.92630 -15.74805 -15.68112 -14.87187 -14.70199 -14.13491 -13.75212 -13.65139 -13.49808 -13.45065 -13.05989 -12.64594 -12.33593 -12.32825 -11.67862 -11.58356 -11.21244 -11.18993 -11.03478 -10.93097 -10.61165 -10.50010 -10.31626 -9.64976 -8.63800 -8.54002 -8.13372 -8.07264 -6.59809 -3.91893 1.26906 1.66930 1.82660 1.85279 3.14961 3.19662 3.24096 3.39445 3.62213 4.07289 4.31758 4.45014 4.63755 4.67301 4.73675 4.82619 4.83122 4.99687 5.11453 5.15099 5.25925 5.51466 5.56194 5.78693 5.93105 6.10082 6.23324 6.43796 6.66742 6.79841 6.89359 7.35294 7.39725 7.45571 7.92558 8.47081 9.02588 9.38010 9.94462 10.56831 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.048384 B = 0.002936 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.566936 B = 9533.661694 C =10091.781364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.358 6.358 3 C 0.462 3.538 4 O -0.480 6.480 5 C 0.071 3.929 6 O -0.296 6.296 7 C 0.116 3.884 8 C -0.212 4.212 9 C -0.084 4.084 10 C -0.136 4.136 11 C -0.053 4.053 12 C 0.462 3.538 13 O -0.594 6.594 14 N -0.539 5.539 15 C -0.294 4.294 16 H 0.109 0.891 17 C 0.024 3.976 18 N -0.888 5.888 19 Si 0.937 3.063 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.271 1.271 23 C -0.102 4.102 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.130 0.870 32 H 0.395 0.605 33 H 0.277 0.723 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.029 -17.327 0.013 21.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.275 6.275 3 C 0.303 3.697 4 O -0.365 6.365 5 C -0.006 4.006 6 O -0.210 6.210 7 C 0.071 3.929 8 C -0.231 4.231 9 C -0.102 4.102 10 C -0.155 4.155 11 C -0.057 4.057 12 C 0.250 3.750 13 O -0.481 6.481 14 N -0.173 5.173 15 C -0.424 4.424 16 H 0.126 0.874 17 C -0.180 4.180 18 N -0.528 5.528 19 Si 0.763 3.237 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.196 1.196 23 C -0.123 4.123 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.123 0.877 27 H 0.124 0.876 28 H 0.124 0.876 29 H 0.143 0.857 30 H 0.144 0.856 31 H 0.148 0.852 32 H 0.230 0.770 33 H 0.087 0.913 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.682 -16.226 0.012 20.594 hybrid contribution 0.683 0.099 0.001 0.690 sum -11.999 -16.127 0.013 20.101 Atomic orbital electron populations 1.23326 0.75406 1.03941 1.02957 1.86437 1.24013 1.32522 1.84539 1.23082 0.91145 0.81883 0.73634 1.90745 1.66628 1.36144 1.42947 1.21798 0.88543 0.84850 1.05411 1.86087 1.21405 1.23789 1.89703 1.18743 0.80769 0.94148 0.99190 1.21180 0.94177 0.97647 1.10097 1.20789 0.94418 0.96712 0.98324 1.21393 1.00036 0.92117 1.02000 1.20136 0.92615 0.94737 0.98172 1.17640 0.83307 0.87326 0.86740 1.90612 1.55482 1.44573 1.57387 1.41895 1.05064 1.09162 1.61150 1.19827 0.91431 0.84469 1.46644 0.87357 1.25406 0.95658 1.00225 0.96687 1.69579 1.03489 1.31625 1.48070 0.85814 0.77338 0.81179 0.79383 1.19585 1.20753 1.19578 1.20415 0.95223 0.94067 1.02556 0.91607 0.91600 0.87706 0.87607 0.87608 0.85714 0.85559 0.85173 0.77028 0.91305 0.84057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.19 10.56 -39.26 -0.41 -3.61 16 3 C 0.46 5.23 8.03 36.01 0.29 5.52 16 4 O -0.48 -7.32 16.25 -25.48 -0.41 -7.74 16 5 C 0.07 0.70 5.33 36.01 0.19 0.89 16 6 O -0.30 -4.40 9.67 -39.42 -0.38 -4.78 16 7 C 0.12 1.81 6.68 -39.28 -0.26 1.55 16 8 C -0.21 -2.71 9.03 -39.34 -0.36 -3.07 16 9 C -0.08 -1.14 10.02 -39.67 -0.40 -1.54 16 10 C -0.14 -2.31 9.54 -39.15 -0.37 -2.68 16 11 C -0.05 -1.08 5.87 -104.99 -0.62 -1.69 16 12 C 0.46 11.63 7.72 -12.38 -0.10 11.53 16 13 O -0.59 -16.99 15.92 5.29 0.08 -16.90 16 14 N -0.54 -13.87 5.23 -11.87 -0.06 -13.93 16 15 C -0.29 -8.13 9.68 -15.00 -0.15 -8.28 16 16 H 0.11 3.12 7.15 -52.49 -0.38 2.74 16 17 C 0.02 0.62 5.50 -17.45 -0.10 0.53 16 18 N -0.89 -23.35 13.05 55.50 0.72 -22.62 16 19 Si 0.94 20.46 29.55 -169.99 -5.02 15.44 16 20 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 21 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 22 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 23 C -0.10 -1.96 9.53 -39.00 -0.37 -2.33 16 24 H 0.07 0.43 8.13 -51.93 -0.42 0.00 16 25 H 0.07 0.43 8.13 -51.93 -0.42 0.01 16 26 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.11 0.77 7.64 -51.93 -0.40 0.37 16 28 H 0.11 0.77 7.67 -51.93 -0.40 0.37 16 29 H 0.13 1.11 6.28 -52.49 -0.33 0.78 16 30 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 31 H 0.13 2.16 6.40 -52.49 -0.34 1.83 16 32 H 0.39 9.51 5.92 -40.82 -0.24 9.27 16 33 H 0.28 6.84 8.31 -40.82 -0.34 6.50 16 34 H 0.14 2.89 7.65 -52.48 -0.40 2.49 16 LS Contribution 308.54 15.07 4.65 4.65 Total: -1.00 -33.82 308.54 -5.31 -39.12 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -3.30 Total: 8.63 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -1.17 Total: 1.74 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 0.66 Total: -36.55 kcal Atomic # 8 Polarization: -31.90 SS G_CDS: -1.13 Total: -33.02 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.82 -5.31 -39.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299712413.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.381 kcal (2) G-P(sol) polarization free energy of solvation -33.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds