Wall clock time and date at job start Tue Mar 31 2020 01:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34230 * 117.00018 * 2 1 4 4 O 1.20826 * 120.00015 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00046 * 180.02562 * 3 2 1 6 6 O 1.42903 * 109.46878 * 179.97438 * 5 3 2 7 7 C 1.35913 * 116.99828 * 179.97438 * 6 5 3 8 8 C 1.38875 * 119.98149 * 359.72828 * 7 6 5 9 9 C 1.38258 * 120.25158 * 179.72191 * 8 7 6 10 10 C 1.37985 * 120.21007 * 0.55068 * 9 8 7 11 11 C 1.39631 * 119.96359 * 359.72590 * 10 9 8 12 12 C 1.47735 * 120.13049 * 180.02562 * 11 10 9 13 13 O 1.21582 * 120.00506 * 179.97438 * 12 11 10 14 14 N 1.34785 * 119.99671 * 359.97438 * 12 11 10 15 15 C 1.36870 * 119.99762 * 180.02562 * 14 12 11 16 16 H 1.08001 * 120.00268 * 0.02562 * 15 14 12 17 17 C 1.39047 * 119.99821 * 180.02562 * 15 14 12 18 18 N 1.31365 * 119.99969 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00077 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.46923 * 59.99765 * 19 17 15 21 21 H 1.48507 * 109.46963 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46764 * 299.99639 * 19 17 15 23 23 C 1.38428 * 119.98231 * 180.02562 * 7 6 5 24 24 H 1.09001 * 109.47630 * 300.00318 * 1 2 3 25 25 H 1.08998 * 109.47321 * 60.00129 * 1 2 3 26 26 H 1.09002 * 109.47011 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47060 * 299.99765 * 5 3 2 28 28 H 1.09001 * 109.47380 * 59.99853 * 5 3 2 29 29 H 1.08002 * 119.87457 * 0.02562 * 8 7 6 30 30 H 1.07998 * 119.89437 * 180.27796 * 9 8 7 31 31 H 1.08001 * 120.01788 * 179.74406 * 10 9 8 32 32 H 0.97003 * 119.99591 * 0.02562 * 14 12 11 33 33 H 0.97001 * 120.00241 * 180.02562 * 18 17 15 34 34 H 1.08003 * 120.10809 * 359.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 8 3.9714 2.6453 -0.0011 7 6 5.3076 2.8937 -0.0011 8 6 6.2097 1.8378 0.0051 9 6 7.5702 2.0840 -0.0007 10 6 8.0411 3.3811 -0.0012 11 6 7.1420 4.4494 -0.0016 12 6 7.6420 5.8395 -0.0027 13 8 6.8571 6.7680 -0.0035 14 7 8.9685 6.0785 -0.0027 15 6 9.4318 7.3664 -0.0032 16 1 8.7346 8.1911 -0.0031 17 6 10.8003 7.6129 -0.0038 18 7 11.6484 6.6097 -0.0044 19 14 11.4327 9.3706 -0.0037 20 1 10.9421 10.0730 1.2091 21 1 12.9178 9.3623 -0.0038 22 1 10.9410 10.0736 -1.2159 23 6 5.7686 4.1989 -0.0010 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.9563 0.7806 0.8892 28 1 3.9557 0.7809 -0.8908 29 1 5.8472 0.8205 0.0094 30 1 8.2666 1.2586 -0.0004 31 1 9.1044 3.5698 -0.0015 32 1 9.5947 5.3377 -0.0024 33 1 12.6031 6.7816 -0.0045 34 1 5.0681 5.0209 -0.0014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299712413.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:30 Heat of formation + Delta-G solvation = -150.198129 kcal Electronic energy + Delta-G solvation = -20326.232308 eV Core-core repulsion = 16803.123220 eV Total energy + Delta-G solvation = -3523.109089 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.82884 -41.13206 -40.09793 -38.14400 -37.46153 -36.16251 -33.51686 -32.20877 -31.55051 -30.12369 -27.88632 -27.29497 -24.58350 -23.39389 -22.47255 -21.16350 -20.27330 -19.45395 -18.46452 -18.08043 -18.01759 -17.42965 -17.02062 -16.55819 -16.55265 -16.14569 -15.74275 -15.54288 -14.88731 -14.62610 -14.53863 -14.42549 -13.87885 -13.57797 -13.45549 -13.03889 -12.97115 -12.84215 -12.42846 -12.13971 -12.13431 -12.11230 -11.88874 -11.61942 -11.58185 -10.57471 -10.17415 -9.95817 -9.30991 -8.58519 -6.03368 -0.08714 0.41495 0.98758 1.05808 1.40623 1.41129 1.52138 2.03729 2.24137 2.45880 2.81964 3.12529 3.26610 3.56080 3.83570 4.00737 4.04042 4.05221 4.22348 4.26563 4.29233 4.31548 4.40507 4.62197 4.70748 4.94601 5.19368 5.21092 5.31378 5.39971 5.47865 5.61536 5.91640 6.28319 6.47330 6.58888 6.99139 7.39082 7.96899 8.58350 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.048384 B = 0.002936 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.566936 B = 9533.661694 C =10091.781364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.349 6.349 3 C 0.464 3.536 4 O -0.532 6.532 5 C 0.060 3.940 6 O -0.324 6.324 7 C 0.123 3.877 8 C -0.178 4.178 9 C -0.067 4.067 10 C -0.138 4.138 11 C -0.084 4.084 12 C 0.457 3.543 13 O -0.642 6.642 14 N -0.545 5.545 15 C -0.341 4.341 16 H 0.082 0.918 17 C -0.006 4.006 18 N -0.906 5.906 19 Si 1.000 3.000 20 H -0.270 1.270 21 H -0.263 1.263 22 H -0.270 1.270 23 C -0.129 4.129 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.141 0.859 27 H 0.145 0.855 28 H 0.144 0.856 29 H 0.184 0.816 30 H 0.176 0.824 31 H 0.129 0.871 32 H 0.401 0.599 33 H 0.285 0.715 34 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.444 -21.366 0.018 24.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.265 6.265 3 C 0.308 3.692 4 O -0.421 6.421 5 C -0.014 4.014 6 O -0.238 6.238 7 C 0.078 3.922 8 C -0.197 4.197 9 C -0.085 4.085 10 C -0.158 4.158 11 C -0.087 4.087 12 C 0.246 3.754 13 O -0.532 6.532 14 N -0.179 5.179 15 C -0.471 4.471 16 H 0.100 0.900 17 C -0.208 4.208 18 N -0.545 5.545 19 Si 0.822 3.178 20 H -0.196 1.196 21 H -0.187 1.187 22 H -0.195 1.195 23 C -0.149 4.149 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.159 0.841 27 H 0.162 0.838 28 H 0.162 0.838 29 H 0.201 0.799 30 H 0.193 0.807 31 H 0.147 0.853 32 H 0.237 0.763 33 H 0.095 0.905 34 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -12.087 -20.338 0.017 23.658 hybrid contribution 0.281 1.083 -0.001 1.119 sum -11.806 -19.255 0.017 22.586 Atomic orbital electron populations 1.23634 0.74039 1.06188 1.02577 1.86441 1.25324 1.31011 1.83774 1.23501 0.91878 0.81736 0.72109 1.90740 1.67833 1.37904 1.45639 1.22315 0.87577 0.82636 1.08911 1.86047 1.20839 1.27444 1.89514 1.18628 0.81889 0.93305 0.98338 1.21785 0.93156 0.99248 1.05518 1.21307 0.95702 0.96027 0.95438 1.21488 0.99398 0.92946 1.01964 1.19729 0.93770 0.92744 1.02497 1.18527 0.82797 0.89279 0.84761 1.90548 1.56615 1.46960 1.59061 1.41852 1.05391 1.08805 1.61886 1.19767 0.92082 0.84832 1.50382 0.90025 1.26189 0.94997 1.04309 0.95314 1.69621 1.03951 1.33142 1.47763 0.84899 0.77514 0.76255 0.79138 1.19551 1.18738 1.19543 1.20252 0.94311 0.95494 1.04886 0.92068 0.92064 0.84087 0.83808 0.83819 0.79917 0.80662 0.85326 0.76324 0.90549 0.87451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 113.37 1.20 1.50 16 2 O -0.35 -5.20 10.56 -51.41 -0.54 -5.74 16 3 C 0.46 9.50 8.03 71.24 0.57 10.08 16 4 O -0.53 -16.19 16.25 28.40 0.46 -15.73 16 5 C 0.06 0.93 5.33 71.24 0.38 1.31 16 6 O -0.32 -9.01 9.67 -73.49 -0.71 -9.72 16 7 C 0.12 3.59 6.68 22.47 0.15 3.74 16 8 C -0.18 -3.55 9.03 22.43 0.20 -3.35 16 9 C -0.07 -1.47 10.02 22.21 0.22 -1.25 16 10 C -0.14 -4.51 9.54 22.55 0.22 -4.30 16 11 C -0.08 -3.55 5.87 -20.10 -0.12 -3.67 16 12 C 0.46 24.64 7.72 86.75 0.67 25.31 16 13 O -0.64 -39.91 15.92 -3.97 -0.06 -39.98 16 14 N -0.54 -29.67 5.23 -309.72 -1.62 -31.29 16 15 C -0.34 -19.95 9.68 84.10 0.81 -19.14 16 16 H 0.08 5.08 7.15 -2.91 -0.02 5.06 16 17 C -0.01 -0.33 5.50 84.96 0.47 0.14 16 18 N -0.91 -47.98 13.05 21.68 0.28 -47.70 16 19 Si 1.00 42.55 29.55 68.60 2.03 44.58 16 20 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 21 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 22 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 23 C -0.13 -5.12 9.53 22.64 0.22 -4.91 16 24 H 0.06 0.72 8.13 -2.39 -0.02 0.71 16 25 H 0.06 0.73 8.13 -2.39 -0.02 0.71 16 26 H 0.14 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.14 1.18 7.64 -2.39 -0.02 1.16 16 28 H 0.14 1.18 7.67 -2.39 -0.02 1.17 16 29 H 0.18 1.60 6.28 -2.91 -0.02 1.58 16 30 H 0.18 2.29 8.06 -2.91 -0.02 2.26 16 31 H 0.13 4.18 6.40 -2.91 -0.02 4.16 16 32 H 0.40 20.15 5.92 -92.71 -0.55 19.60 16 33 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 34 H 0.11 4.86 7.65 -2.91 -0.02 4.84 16 Total: -1.00 -81.77 308.54 5.43 -76.34 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: 0.60 Total: 23.77 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 4.99 Total: 5.46 kcal Atomic # 7 Polarization: -77.65 SS G_CDS: -1.34 Total: -78.99 kcal Atomic # 8 Polarization: -70.31 SS G_CDS: -0.86 Total: -71.17 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -81.77 5.43 -76.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299712413.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.856 kcal (2) G-P(sol) polarization free energy of solvation -81.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds