Wall clock time and date at job start Tue Mar 31 2020 00:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17409 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47378 * 82.93207 * 3 2 1 5 5 C 1.37094 * 119.99917 * 264.09155 * 4 3 2 6 6 H 1.08006 * 120.00256 * 198.05243 * 5 4 3 7 7 C 1.38947 * 120.00212 * 18.05420 * 5 4 3 8 8 N 1.31410 * 119.99942 * 21.03195 * 7 5 4 9 9 Si 1.86804 * 120.00069 * 201.03247 * 7 5 4 10 10 H 1.48501 * 109.46984 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47010 * 119.99660 * 9 7 5 12 12 H 1.48495 * 109.46992 * 239.99915 * 9 7 5 13 13 C 1.34778 * 119.99854 * 84.08385 * 4 3 2 14 14 O 1.21292 * 120.00365 * 0.02562 * 13 4 3 15 15 C 1.50703 * 119.99979 * 180.02562 * 13 4 3 16 16 C 1.50695 * 109.47474 * 180.02562 * 15 13 4 17 17 C 1.38418 * 120.02623 * 89.99781 * 16 15 13 18 18 F 1.35091 * 120.01332 * 359.70259 * 17 16 15 19 19 C 1.38472 * 119.97120 * 179.97438 * 17 16 15 20 20 C 1.38204 * 120.03051 * 0.02562 * 19 17 16 21 21 C 1.38215 * 120.04991 * 359.97438 * 20 19 17 22 22 C 1.38420 * 120.02006 * 269.98082 * 16 15 13 23 23 F 1.35097 * 120.01947 * 359.97438 * 22 16 15 24 24 H 4.40639 * 5.51417 * 180.02562 * 4 1 2 25 25 H 1.09003 * 109.47206 * 322.93187 * 3 2 1 26 26 H 1.09003 * 109.46709 * 202.93143 * 3 2 1 27 27 H 0.97003 * 119.99811 * 180.02562 * 8 7 5 28 28 H 1.09003 * 109.47106 * 59.99945 * 15 13 4 29 29 H 1.09005 * 109.47259 * 300.00846 * 15 13 4 30 30 H 1.08006 * 119.98559 * 180.02562 * 19 17 16 31 31 H 1.08000 * 119.98169 * 180.02562 * 20 19 17 32 32 H 1.07995 * 119.98530 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.1691 -1.3707 5 6 3.4788 -1.4154 -1.8263 6 1 4.0997 -1.5171 -2.7042 7 6 3.0290 -2.5479 -1.1586 8 7 1.9759 -2.4744 -0.3760 9 14 3.9212 -4.1750 -1.3736 10 1 5.0674 -3.9923 -2.3000 11 1 4.4202 -4.6437 -0.0559 12 1 2.9856 -5.1820 -1.9355 13 6 3.2452 0.9001 -2.1838 14 8 2.9409 2.0028 -1.7807 15 6 3.7472 0.7254 -3.5940 16 6 3.7767 2.0637 -4.2862 17 6 4.9143 2.8500 -4.2254 18 9 5.9966 2.4207 -3.5404 19 6 4.9403 4.0793 -4.8622 20 6 3.8310 4.5215 -5.5579 21 6 2.6946 3.7372 -5.6193 22 6 2.6663 2.5074 -4.9835 23 9 1.5557 1.7407 -5.0444 24 1 -1.0499 0.0002 -0.0001 25 1 3.0098 -0.8192 0.6195 26 1 3.0089 0.9473 0.4004 27 1 1.6622 -3.2650 0.0904 28 1 3.0835 0.0508 -4.1350 29 1 4.7529 0.3056 -3.5724 30 1 5.8280 4.6928 -4.8153 31 1 3.8524 5.4802 -6.0547 32 1 1.8282 4.0840 -6.1628 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000302375065.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:17 Heat of formation + Delta-G solvation = -49.295738 kcal Electronic energy + Delta-G solvation = -21398.953435 eV Core-core repulsion = 17769.132286 eV Total energy + Delta-G solvation = -3629.821148 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.081 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.00049 -49.98231 -40.76711 -39.52352 -37.06590 -34.17697 -33.71404 -33.13713 -31.21075 -29.46383 -27.78869 -26.34717 -23.80259 -23.19531 -21.12096 -19.69287 -19.08034 -18.51773 -18.34134 -18.06936 -16.87814 -16.82383 -16.57140 -16.27948 -16.21485 -16.11957 -15.90612 -15.39272 -14.60708 -14.56988 -14.41126 -13.85620 -13.69566 -13.44362 -13.16768 -12.88130 -12.82050 -12.61739 -12.49104 -12.19931 -12.08174 -11.28542 -11.25745 -10.66666 -10.53398 -9.91446 -9.76958 -9.69109 -8.31867 -5.96843 0.03934 0.04447 1.37933 1.47580 1.60210 1.81520 2.06105 2.30153 2.37146 2.42584 2.98436 3.03353 3.16923 3.48488 3.54533 3.73477 3.88054 3.94291 4.27883 4.29164 4.48299 4.56542 4.70608 4.84637 4.93341 4.96124 5.10254 5.10728 5.22545 5.34311 5.40911 5.71157 5.85653 6.32588 7.04853 7.08932 7.45366 7.87157 8.67869 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.020105 B = 0.005935 C = 0.005390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.344538 B = 4716.639725 C = 5193.955463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.147 4.147 3 C 0.244 3.756 4 N -0.446 5.446 5 C -0.369 4.369 6 H 0.111 0.889 7 C 0.000 4.000 8 N -0.875 5.875 9 Si 0.989 3.011 10 H -0.257 1.257 11 H -0.276 1.276 12 H -0.282 1.282 13 C 0.454 3.546 14 O -0.627 6.627 15 C -0.076 4.076 16 C -0.150 4.150 17 C 0.112 3.888 18 F -0.142 7.142 19 C -0.156 4.156 20 C -0.053 4.053 21 C -0.158 4.158 22 C 0.107 3.893 23 F -0.147 7.147 24 H 0.236 0.764 25 H 0.097 0.903 26 H 0.064 0.936 27 H 0.271 0.729 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.172 0.828 31 H 0.192 0.808 32 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.344 8.704 -9.744 13.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 C -0.149 4.149 3 C 0.121 3.879 4 N -0.163 5.163 5 C -0.496 4.496 6 H 0.128 0.872 7 C -0.204 4.204 8 N -0.511 5.511 9 Si 0.813 3.187 10 H -0.181 1.181 11 H -0.202 1.202 12 H -0.208 1.208 13 C 0.244 3.756 14 O -0.516 6.516 15 C -0.115 4.115 16 C -0.152 4.152 17 C 0.093 3.907 18 F -0.121 7.121 19 C -0.174 4.174 20 C -0.070 4.070 21 C -0.176 4.176 22 C 0.087 3.913 23 F -0.126 7.126 24 H 0.252 0.748 25 H 0.115 0.885 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.113 0.887 29 H 0.122 0.878 30 H 0.190 0.810 31 H 0.209 0.791 32 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 4.113 9.026 -9.373 13.647 hybrid contribution -0.196 -1.647 0.563 1.751 sum 3.917 7.379 -8.810 12.142 Atomic orbital electron populations 1.25123 0.96362 1.05467 1.00432 1.23508 0.95171 0.96279 0.99933 1.17962 0.84692 0.99913 0.85290 1.43896 1.55505 1.07192 1.09739 1.20022 1.31970 0.81585 1.16014 0.87188 1.26164 0.95085 1.02749 0.96439 1.70246 1.19997 1.31421 1.29422 0.84940 0.78443 0.76894 0.78453 1.18071 1.20167 1.20845 1.20530 0.82969 0.84299 0.87816 1.90501 1.57277 1.26552 1.77239 1.20161 1.03983 0.94681 0.92683 1.19638 0.94549 0.98622 1.02358 1.17547 0.82932 0.94815 0.95444 1.91464 1.52664 1.90145 1.77798 1.21569 1.02664 0.93759 0.99428 1.21342 0.89574 1.00427 0.95673 1.21561 1.02310 0.91891 1.01886 1.17653 0.81973 0.91610 1.00022 1.91468 1.50806 1.75442 1.94839 0.74780 0.88466 0.91802 0.91856 0.88667 0.87783 0.81024 0.79094 0.81387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -11.98 19.25 74.32 1.43 -10.55 16 2 C -0.15 -7.70 11.52 31.12 0.36 -7.34 16 3 C 0.24 12.69 5.06 84.57 0.43 13.12 16 4 N -0.45 -23.68 2.60 -645.42 -1.68 -25.36 16 5 C -0.37 -18.97 9.12 84.04 0.77 -18.21 16 6 H 0.11 5.28 6.57 -2.91 -0.02 5.26 16 7 C 0.00 -0.01 4.87 84.93 0.41 0.40 16 8 N -0.87 -46.08 9.47 21.66 0.21 -45.88 16 9 Si 0.99 39.30 29.60 68.60 2.03 41.33 16 10 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 11 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 12 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 13 C 0.45 23.48 7.56 87.66 0.66 24.14 16 14 O -0.63 -35.25 15.71 -3.07 -0.05 -35.30 16 15 C -0.08 -3.25 3.94 29.10 0.11 -3.14 16 16 C -0.15 -5.65 4.38 -19.78 -0.09 -5.74 16 17 C 0.11 3.69 7.24 22.37 0.16 3.85 16 18 F -0.14 -5.04 16.48 44.97 0.74 -4.29 16 19 C -0.16 -3.56 10.02 22.32 0.22 -3.33 16 20 C -0.05 -0.97 10.04 22.26 0.22 -0.74 16 21 C -0.16 -3.78 10.03 22.32 0.22 -3.55 16 22 C 0.11 3.68 7.24 22.37 0.16 3.85 16 23 F -0.15 -5.70 16.48 44.97 0.74 -4.96 16 24 H 0.24 8.62 7.80 -4.42 -0.03 8.59 16 25 H 0.10 5.07 6.47 -2.39 -0.02 5.05 16 26 H 0.06 3.24 7.61 -2.39 -0.02 3.22 16 27 H 0.27 13.54 8.31 -92.71 -0.77 12.76 16 28 H 0.10 4.11 7.60 -2.39 -0.02 4.09 16 29 H 0.10 4.19 7.18 -2.38 -0.02 4.18 16 30 H 0.17 2.71 8.06 -2.91 -0.02 2.69 16 31 H 0.19 1.56 8.06 -2.91 -0.02 1.54 16 32 H 0.17 2.93 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -69.23 297.66 8.23 -60.99 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 1.16 Total: 20.69 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: 5.08 Total: -7.23 kcal Atomic # 7 Polarization: -69.76 SS G_CDS: -1.47 Total: -71.23 kcal Atomic # 8 Polarization: -35.25 SS G_CDS: -0.05 Total: -35.30 kcal Atomic # 9 Polarization: -10.73 SS G_CDS: 1.48 Total: -9.25 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.33 kcal Total: -69.23 8.23 -60.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302375065.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.698 kcal (2) G-P(sol) polarization free energy of solvation -69.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds