Wall clock time and date at job start Tue Mar 31 2020 01:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38344 * 120.45206 * 2 1 4 4 C 1.38837 * 118.50514 * 179.97438 * 3 2 1 5 5 N 1.48008 * 120.33487 * 179.97438 * 4 3 2 6 6 O 1.21797 * 119.99852 * 0.02562 * 5 4 3 7 7 O 1.21801 * 120.00019 * 180.02562 * 5 4 3 8 8 C 1.38071 * 119.33128 * 359.97438 * 4 3 2 9 9 N 1.31942 * 120.85151 * 359.74629 * 8 4 3 10 10 C 1.32424 * 121.62301 * 0.52135 * 9 8 4 11 11 N 1.39008 * 119.70633 * 179.75687 * 10 9 8 12 12 C 1.47958 * 110.99656 * 359.72201 * 11 10 9 13 13 C 1.53933 * 86.17823 * 222.41749 * 12 11 10 14 14 O 1.42904 * 113.73759 * 269.25746 * 13 12 11 15 15 C 1.50702 * 113.73068 * 138.07972 * 13 12 11 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 13 12 17 17 C 1.37884 * 119.99942 * 179.72127 * 15 13 12 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 13 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 13 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 C 1.47961 * 110.99820 * 260.36554 * 11 10 9 24 24 H 1.09006 * 109.47210 * 270.02287 * 1 2 3 25 25 H 1.09005 * 109.47085 * 30.02284 * 1 2 3 26 26 H 1.08995 * 109.47374 * 150.02348 * 1 2 3 27 27 H 1.08003 * 120.74600 * 359.95884 * 3 2 1 28 28 H 1.07998 * 119.57394 * 179.97438 * 8 4 3 29 29 H 1.09002 * 113.75733 * 108.10176 * 12 11 10 30 30 H 1.08999 * 113.76210 * 336.73874 * 12 11 10 31 31 H 0.96697 * 114.00189 * 178.10553 * 14 13 12 32 32 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 33 33 H 1.09003 * 113.75693 * 23.26038 * 23 11 10 34 34 H 1.09003 * 113.75376 * 251.89926 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2081 1.1926 0.0000 4 6 3.5957 1.1454 0.0005 5 7 4.3862 2.3967 0.0000 6 8 3.8196 3.4749 -0.0005 7 8 5.6032 2.3483 0.0000 8 6 4.2307 -0.0806 0.0016 9 7 3.5362 -1.2024 0.0071 10 6 2.2119 -1.1991 0.0016 11 7 1.5201 -2.4048 0.0026 12 6 2.4544 -3.5521 0.0035 13 6 1.5104 -4.1894 -1.0319 14 8 0.4835 -4.9976 -0.4535 15 6 2.2281 -4.8747 -2.1661 16 1 3.3077 -4.8845 -2.1946 17 6 1.5065 -5.4945 -3.1643 18 7 0.1919 -5.4828 -3.1295 19 14 2.3962 -6.3504 -4.5661 20 1 3.2553 -7.4318 -4.0202 21 1 1.4009 -6.9330 -5.5017 22 1 3.2398 -5.3666 -5.2912 23 6 1.0615 -2.7541 -1.3601 24 1 -0.3634 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3634 -0.8901 -0.5134 27 1 1.6878 2.1390 -0.0007 28 1 5.3099 -0.1218 0.0016 29 1 2.4914 -4.0876 0.9523 30 1 3.4424 -3.3143 -0.3907 31 1 -0.1291 -5.3764 -1.0986 32 1 -0.3158 -5.9185 -3.8319 33 1 1.6420 -2.2828 -2.1531 34 1 -0.0146 -2.6518 -1.5008 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000302426111.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:22 Heat of formation + Delta-G solvation = 30.169725 kcal Electronic energy + Delta-G solvation = -21665.537911 eV Core-core repulsion = 18182.542910 eV Total energy + Delta-G solvation = -3482.995001 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.23719 -41.11559 -38.76619 -36.57511 -34.77713 -34.02480 -32.33962 -32.13209 -28.49878 -27.55172 -26.20832 -25.57689 -24.50497 -22.73548 -21.78654 -19.10077 -18.97020 -18.71082 -17.96534 -17.55498 -16.88074 -16.53604 -15.38808 -15.05808 -14.68221 -14.36650 -13.74739 -13.72495 -13.45321 -13.11328 -12.89325 -12.33476 -12.16255 -11.87687 -11.62832 -11.58617 -11.30223 -11.18263 -11.16261 -11.02502 -10.62708 -10.46836 -10.31002 -9.98428 -9.71689 -9.45032 -8.84511 -8.63287 -8.17397 -6.46805 -4.56729 -0.22265 0.79987 1.29089 1.37582 3.11075 3.17158 3.19572 3.22443 3.77045 4.10126 4.15828 4.25031 4.33752 4.66924 4.79023 4.99245 5.16816 5.38009 5.48431 5.58539 5.66897 5.74511 5.88896 5.95104 6.02165 6.11222 6.32405 6.46861 6.49592 6.59767 7.06656 7.43098 7.54125 7.56334 7.64541 7.74981 8.46280 9.14210 9.38931 10.59609 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.024593 B = 0.004627 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.239726 B = 6049.400456 C = 6573.279120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.138 4.138 3 C -0.006 4.006 4 C -0.136 4.136 5 N 0.044 4.956 6 O -0.173 6.173 7 O -0.168 6.168 8 C 0.197 3.803 9 N -0.499 5.499 10 C 0.342 3.658 11 N -0.435 5.435 12 C 0.020 3.980 13 C 0.248 3.752 14 O -0.569 6.569 15 C -0.539 4.539 16 H 0.070 0.930 17 C 0.073 3.927 18 N -0.898 5.898 19 Si 0.907 3.093 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.274 1.274 23 C 0.005 3.995 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.086 0.914 27 H 0.160 0.840 28 H 0.181 0.819 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.392 0.608 32 H 0.274 0.726 33 H 0.072 0.928 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.001 9.353 3.637 10.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.143 4.143 3 C -0.032 4.032 4 C -0.224 4.224 5 N 0.561 4.439 6 O -0.386 6.386 7 O -0.382 6.382 8 C 0.035 3.965 9 N -0.213 5.213 10 C 0.111 3.889 11 N -0.152 5.152 12 C -0.107 4.107 13 C 0.206 3.794 14 O -0.381 6.381 15 C -0.577 4.577 16 H 0.088 0.912 17 C -0.129 4.129 18 N -0.538 5.538 19 Si 0.734 3.266 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.200 1.200 23 C -0.120 4.120 24 H 0.097 0.903 25 H 0.088 0.912 26 H 0.104 0.896 27 H 0.178 0.822 28 H 0.197 0.803 29 H 0.102 0.898 30 H 0.121 0.879 31 H 0.248 0.752 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.639 8.065 4.597 9.305 hybrid contribution 0.488 0.723 -1.722 1.930 sum 1.127 8.788 2.875 9.314 Atomic orbital electron populations 1.20712 0.88081 1.03886 1.03392 1.20510 0.98864 0.90484 1.04472 1.21213 0.90668 1.00246 0.91050 1.22074 0.92796 0.85446 1.22057 1.43381 1.01178 1.02382 0.96999 1.94513 1.73409 1.16530 1.54143 1.94527 0.95604 1.94126 1.53939 1.22666 1.01668 0.84629 0.87525 1.68247 1.07979 1.27936 1.17126 1.21371 0.87953 0.94232 0.85353 1.66087 1.24667 0.98153 1.26331 1.24346 0.96640 0.88175 1.01563 1.19750 0.85114 0.85562 0.88977 1.86068 1.44392 1.67987 1.39682 1.21548 0.93942 1.35736 1.06452 0.91181 1.25070 0.94960 0.94790 0.98122 1.69302 1.05319 1.43985 1.35180 0.86402 0.79398 0.79888 0.80954 1.19707 1.20886 1.19967 1.25094 1.01502 1.01213 0.84173 0.90275 0.91231 0.89554 0.82200 0.80257 0.89816 0.87905 0.75238 0.91535 0.91007 0.89350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.23 9.77 36.00 0.35 -0.88 16 2 C -0.14 -1.94 5.87 -104.26 -0.61 -2.55 16 3 C -0.01 -0.08 9.34 -39.32 -0.37 -0.44 16 4 C -0.14 -1.89 6.87 -79.79 -0.55 -2.44 16 5 N 0.04 0.66 4.45 34.04 0.15 0.81 16 6 O -0.17 -2.59 18.52 -29.46 -0.55 -3.14 16 7 O -0.17 -2.52 18.47 -29.46 -0.54 -3.07 16 8 C 0.20 2.78 10.71 -17.57 -0.19 2.60 16 9 N -0.50 -8.20 8.21 -12.43 -0.10 -8.30 16 10 C 0.34 5.74 5.88 -155.01 -0.91 4.83 16 11 N -0.43 -8.17 5.60 -176.65 -0.99 -9.16 16 12 C 0.02 0.41 7.04 -2.77 -0.02 0.39 16 13 C 0.25 5.70 1.44 -90.84 -0.13 5.57 16 14 O -0.57 -13.97 13.48 -35.23 -0.47 -14.45 16 15 C -0.54 -13.34 8.62 -34.44 -0.30 -13.64 16 16 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 17 C 0.07 1.80 5.40 -17.82 -0.10 1.70 16 18 N -0.90 -22.22 11.08 55.43 0.61 -21.61 16 19 Si 0.91 19.31 29.54 -169.99 -5.02 14.29 16 20 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 21 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 22 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 23 C 0.00 0.10 6.26 -2.77 -0.02 0.08 16 24 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 26 H 0.09 1.17 5.78 -51.93 -0.30 0.87 16 27 H 0.16 1.66 7.69 -52.48 -0.40 1.26 16 28 H 0.18 2.11 7.61 -52.49 -0.40 1.71 16 29 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 30 H 0.10 2.06 6.62 -51.93 -0.34 1.72 16 31 H 0.39 9.78 6.45 45.56 0.29 10.08 16 32 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 33 H 0.07 1.48 7.86 -51.93 -0.41 1.07 16 34 H 0.09 1.77 7.36 -51.93 -0.38 1.39 16 LS Contribution 297.74 15.07 4.49 4.49 Total: -1.00 -25.85 297.74 -8.01 -33.86 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -2.75 Total: 11.06 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -2.84 Total: -4.78 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: -0.32 Total: -38.27 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -1.56 Total: -20.65 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.02 Total: 14.29 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -25.85 -8.01 -33.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302426111.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.031 kcal (2) G-P(sol) polarization free energy of solvation -25.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds