Wall clock time and date at job start Tue Mar 31 2020 01:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38344 * 120.45206 * 2 1 4 4 C 1.38837 * 118.50514 * 179.97438 * 3 2 1 5 5 N 1.48008 * 120.33487 * 179.97438 * 4 3 2 6 6 O 1.21797 * 119.99852 * 0.02562 * 5 4 3 7 7 O 1.21801 * 120.00019 * 180.02562 * 5 4 3 8 8 C 1.38071 * 119.33128 * 359.97438 * 4 3 2 9 9 N 1.31942 * 120.85151 * 359.74629 * 8 4 3 10 10 C 1.32424 * 121.62301 * 0.52135 * 9 8 4 11 11 N 1.39008 * 119.70633 * 179.75687 * 10 9 8 12 12 C 1.47958 * 110.99656 * 359.72201 * 11 10 9 13 13 C 1.53933 * 86.17823 * 222.41749 * 12 11 10 14 14 O 1.42904 * 113.73759 * 269.25746 * 13 12 11 15 15 C 1.50702 * 113.73068 * 138.07972 * 13 12 11 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 13 12 17 17 C 1.37884 * 119.99942 * 179.72127 * 15 13 12 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 13 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 13 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 C 1.47961 * 110.99820 * 260.36554 * 11 10 9 24 24 H 1.09006 * 109.47210 * 270.02287 * 1 2 3 25 25 H 1.09005 * 109.47085 * 30.02284 * 1 2 3 26 26 H 1.08995 * 109.47374 * 150.02348 * 1 2 3 27 27 H 1.08003 * 120.74600 * 359.95884 * 3 2 1 28 28 H 1.07998 * 119.57394 * 179.97438 * 8 4 3 29 29 H 1.09002 * 113.75733 * 108.10176 * 12 11 10 30 30 H 1.08999 * 113.76210 * 336.73874 * 12 11 10 31 31 H 0.96697 * 114.00189 * 178.10553 * 14 13 12 32 32 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 33 33 H 1.09003 * 113.75693 * 23.26038 * 23 11 10 34 34 H 1.09003 * 113.75376 * 251.89926 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2081 1.1926 0.0000 4 6 3.5957 1.1454 0.0005 5 7 4.3862 2.3967 0.0000 6 8 3.8196 3.4749 -0.0005 7 8 5.6032 2.3483 0.0000 8 6 4.2307 -0.0806 0.0016 9 7 3.5362 -1.2024 0.0071 10 6 2.2119 -1.1991 0.0016 11 7 1.5201 -2.4048 0.0026 12 6 2.4544 -3.5521 0.0035 13 6 1.5104 -4.1894 -1.0319 14 8 0.4835 -4.9976 -0.4535 15 6 2.2281 -4.8747 -2.1661 16 1 3.3077 -4.8845 -2.1946 17 6 1.5065 -5.4945 -3.1643 18 7 0.1919 -5.4828 -3.1295 19 14 2.3962 -6.3504 -4.5661 20 1 3.2553 -7.4318 -4.0202 21 1 1.4009 -6.9330 -5.5017 22 1 3.2398 -5.3666 -5.2912 23 6 1.0615 -2.7541 -1.3601 24 1 -0.3634 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3634 -0.8901 -0.5134 27 1 1.6878 2.1390 -0.0007 28 1 5.3099 -0.1218 0.0016 29 1 2.4914 -4.0876 0.9523 30 1 3.4424 -3.3143 -0.3907 31 1 -0.1291 -5.3764 -1.0986 32 1 -0.3158 -5.9185 -3.8319 33 1 1.6420 -2.2828 -2.1531 34 1 -0.0146 -2.6518 -1.5008 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000302426111.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:22 Heat of formation + Delta-G solvation = 13.741510 kcal Electronic energy + Delta-G solvation = -21666.250292 eV Core-core repulsion = 18182.542910 eV Total energy + Delta-G solvation = -3483.707382 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.40699 -42.42576 -40.21011 -37.74488 -36.47274 -35.13634 -34.17225 -33.48384 -29.98986 -28.65748 -27.67668 -27.15453 -25.94634 -23.98584 -23.00269 -20.73996 -20.10653 -19.93262 -19.64910 -18.71044 -18.10276 -18.06473 -17.14475 -16.59116 -16.17827 -15.67771 -15.28337 -14.82402 -14.67634 -14.55585 -13.95667 -13.88591 -13.51741 -13.40082 -13.22057 -12.86453 -12.78555 -12.64263 -12.45698 -12.33794 -12.30524 -12.25090 -11.65318 -11.38870 -11.11673 -10.83300 -10.67580 -10.29419 -9.67762 -8.31455 -6.48070 -1.40373 -0.28703 0.09936 0.21526 1.41557 1.44156 1.51102 2.02942 2.33479 2.50722 2.88748 2.96760 3.16759 3.23049 3.44985 3.77218 3.96896 4.09963 4.13589 4.26608 4.29840 4.49793 4.60739 4.69820 4.82646 4.84083 4.91957 4.95786 5.15502 5.26078 5.31822 5.68629 5.90227 5.95554 6.33972 6.45869 6.56258 7.25161 7.46801 8.73648 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.024593 B = 0.004627 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.239726 B = 6049.400456 C = 6573.279120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.132 4.132 3 C 0.008 3.992 4 C -0.132 4.132 5 N 0.044 4.956 6 O -0.168 6.168 7 O -0.177 6.177 8 C 0.193 3.807 9 N -0.517 5.517 10 C 0.314 3.686 11 N -0.431 5.431 12 C 0.028 3.972 13 C 0.224 3.776 14 O -0.580 6.580 15 C -0.562 4.562 16 H 0.063 0.937 17 C 0.036 3.964 18 N -0.913 5.913 19 Si 0.962 3.038 20 H -0.273 1.273 21 H -0.278 1.278 22 H -0.273 1.273 23 C 0.021 3.979 24 H 0.091 0.909 25 H 0.099 0.901 26 H 0.066 0.934 27 H 0.192 0.808 28 H 0.199 0.801 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.387 0.613 32 H 0.277 0.723 33 H 0.064 0.936 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.045 11.016 3.497 11.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.137 4.137 3 C -0.018 4.018 4 C -0.219 4.219 5 N 0.560 4.440 6 O -0.383 6.383 7 O -0.389 6.389 8 C 0.032 3.968 9 N -0.231 5.231 10 C 0.084 3.916 11 N -0.149 5.149 12 C -0.100 4.100 13 C 0.183 3.817 14 O -0.391 6.391 15 C -0.599 4.599 16 H 0.082 0.918 17 C -0.165 4.165 18 N -0.554 5.554 19 Si 0.788 3.212 20 H -0.198 1.198 21 H -0.203 1.203 22 H -0.198 1.198 23 C -0.104 4.104 24 H 0.109 0.891 25 H 0.118 0.882 26 H 0.085 0.915 27 H 0.209 0.791 28 H 0.216 0.784 29 H 0.098 0.902 30 H 0.121 0.879 31 H 0.241 0.759 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.710 9.740 4.473 10.741 hybrid contribution 0.519 0.328 -1.637 1.748 sum 1.230 10.068 2.836 10.532 Atomic orbital electron populations 1.20783 0.86456 1.04425 1.04313 1.20700 0.99963 0.89705 1.03350 1.21523 0.90149 1.00983 0.89154 1.22185 0.93311 0.85092 1.21321 1.43448 1.01182 1.02489 0.96893 1.94510 1.73339 1.16690 1.53739 1.94539 0.95787 1.94191 1.54396 1.22920 1.02471 0.84207 0.87252 1.68149 1.08172 1.29233 1.17552 1.21410 0.88421 0.94217 0.87541 1.66017 1.24613 0.98726 1.25497 1.24171 0.96479 0.88802 1.00548 1.20035 0.85491 0.86507 0.89669 1.86050 1.44691 1.68559 1.39836 1.21784 0.93885 1.36769 1.07503 0.91846 1.25698 0.95627 0.95272 0.99939 1.69363 1.06035 1.44261 1.35691 0.85537 0.78395 0.78788 0.78517 1.19818 1.20340 1.19820 1.24675 1.01134 0.99445 0.85150 0.89082 0.88195 0.91480 0.79117 0.78406 0.90181 0.87931 0.75866 0.91339 0.91795 0.89467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.18 9.77 71.23 0.70 -1.48 16 2 C -0.13 -3.40 5.87 -19.63 -0.12 -3.52 16 3 C 0.01 0.17 9.34 22.44 0.21 0.38 16 4 C -0.13 -3.33 6.87 36.48 0.25 -3.08 16 5 N 0.04 1.18 4.45 -46.22 -0.21 0.98 16 6 O -0.17 -4.52 18.52 18.89 0.35 -4.17 16 7 O -0.18 -4.96 18.47 18.88 0.35 -4.61 16 8 C 0.19 5.14 10.71 84.64 0.91 6.04 16 9 N -0.52 -16.56 8.21 -193.25 -1.59 -18.15 16 10 C 0.31 10.24 5.88 133.05 0.78 11.02 16 11 N -0.43 -16.16 5.60 -716.03 -4.01 -20.17 16 12 C 0.03 1.14 7.04 86.41 0.61 1.75 16 13 C 0.22 10.52 1.44 -10.90 -0.02 10.50 16 14 O -0.58 -29.11 13.48 -148.98 -2.01 -31.11 16 15 C -0.56 -28.26 8.62 25.60 0.22 -28.04 16 16 H 0.06 3.18 7.81 -2.91 -0.02 3.15 16 17 C 0.04 1.75 5.40 84.66 0.46 2.21 16 18 N -0.91 -45.54 11.08 21.45 0.24 -45.31 16 19 Si 0.96 39.58 29.54 68.60 2.03 41.61 16 20 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 21 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 22 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 23 C 0.02 0.88 6.26 86.40 0.54 1.42 16 24 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 25 H 0.10 1.50 8.10 -2.38 -0.02 1.48 16 26 H 0.07 1.72 5.78 -2.39 -0.01 1.71 16 27 H 0.19 3.07 7.69 -2.91 -0.02 3.05 16 28 H 0.20 4.34 7.61 -2.91 -0.02 4.32 16 29 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 30 H 0.10 4.19 6.62 -2.39 -0.02 4.17 16 31 H 0.39 19.81 6.45 -74.06 -0.48 19.33 16 32 H 0.28 13.09 8.31 -92.70 -0.77 12.32 16 33 H 0.06 2.67 7.86 -2.39 -0.02 2.65 16 34 H 0.09 3.55 7.36 -2.39 -0.02 3.53 16 Total: -1.00 -54.66 297.74 0.38 -54.29 By element: Atomic # 1 Polarization: 28.75 SS G_CDS: 0.68 Total: 29.43 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: 4.54 Total: -2.78 kcal Atomic # 7 Polarization: -77.09 SS G_CDS: -5.56 Total: -82.65 kcal Atomic # 8 Polarization: -38.58 SS G_CDS: -1.31 Total: -39.89 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 2.03 Total: 41.61 kcal Total: -54.66 0.38 -54.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302426111.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.027 kcal (2) G-P(sol) polarization free energy of solvation -54.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds