Wall clock time and date at job start Tue Mar 31 2020 01:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38137 * 119.96279 * 2 1 4 4 C 1.38853 * 119.92678 * 179.97438 * 3 2 1 5 5 N 1.39947 * 120.06635 * 180.25361 * 4 3 2 6 6 C 1.34779 * 119.99614 * 215.66764 * 5 4 3 7 7 O 1.21582 * 120.00225 * 355.05083 * 6 5 4 8 8 N 1.34773 * 119.99806 * 175.05016 * 6 5 4 9 9 C 1.46498 * 120.00315 * 180.02562 * 8 6 5 10 10 C 1.50692 * 109.47608 * 180.02562 * 9 8 6 11 11 H 1.08004 * 119.99788 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00367 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99779 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00368 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47141 * 60.00034 * 14 12 10 16 16 H 1.48502 * 109.47101 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47369 * 300.00152 * 14 12 10 18 18 C 1.38878 * 119.85942 * 359.97363 * 4 3 2 19 19 C 1.38093 * 119.93360 * 0.02562 * 18 4 3 20 20 C 1.38260 * 119.96696 * 179.97438 * 2 1 3 21 21 N 1.48022 * 119.92670 * 0.02757 * 20 2 1 22 22 O 1.21795 * 120.00054 * 173.49142 * 21 20 2 23 23 O 1.21801 * 120.00157 * 353.48155 * 21 20 2 24 24 H 1.08999 * 109.47718 * 263.37787 * 1 2 3 25 25 H 1.09005 * 109.47391 * 23.38188 * 1 2 3 26 26 H 1.09004 * 109.46690 * 143.37493 * 1 2 3 27 27 H 1.08000 * 120.04001 * 359.97438 * 3 2 1 28 28 H 0.96996 * 120.00135 * 35.66867 * 5 4 3 29 29 H 0.96998 * 119.99871 * 359.97438 * 8 6 5 30 30 H 1.09007 * 109.46802 * 300.00027 * 9 8 6 31 31 H 1.09007 * 109.47175 * 59.99659 * 9 8 6 32 32 H 0.96999 * 119.99685 * 180.02562 * 13 12 10 33 33 H 1.08003 * 120.03611 * 180.02562 * 18 4 3 34 34 H 1.08000 * 119.96536 * 180.02562 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1968 0.0000 4 6 3.5854 1.1959 0.0005 5 7 4.2873 2.4066 0.0059 6 6 5.4459 2.5168 -0.6738 7 8 5.9274 1.5413 -1.2167 8 7 6.0708 3.7084 -0.7517 9 6 7.3299 3.8284 -1.4909 10 6 7.8176 5.2527 -1.4247 11 1 7.2465 5.9945 -0.8862 12 6 8.9928 5.6088 -2.0516 13 7 9.6879 4.7056 -2.7078 14 14 9.5969 7.3745 -1.9702 15 1 9.8163 7.7578 -0.5523 16 1 10.8739 7.4958 -2.7184 17 1 8.5813 8.2737 -2.5745 18 6 4.2761 -0.0090 0.0016 19 6 3.5806 -1.2020 0.0016 20 6 2.1976 -1.1978 0.0005 21 7 1.4551 -2.4783 0.0005 22 8 2.0563 -3.5308 -0.1186 23 8 0.2429 -2.4795 0.1197 24 1 -0.3634 -0.1185 1.0208 25 1 -0.3634 0.9433 -0.4078 26 1 -0.3633 -0.8248 -0.6131 27 1 1.6569 2.1321 -0.0004 28 1 3.9400 3.1664 0.4988 29 1 5.6865 4.4867 -0.3188 30 1 8.0757 3.1684 -1.0477 31 1 7.1684 3.5472 -2.5316 32 1 10.5149 4.9561 -3.1485 33 1 5.3561 -0.0130 0.0025 34 1 4.1172 -2.1392 0.0029 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338329735.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:23 Heat of formation + Delta-G solvation = -28.586211 kcal Electronic energy + Delta-G solvation = -20586.966044 eV Core-core repulsion = 17101.423195 eV Total energy + Delta-G solvation = -3485.542849 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.29810 -41.85996 -40.08849 -37.73564 -36.58939 -36.03942 -34.49021 -33.73590 -31.89065 -29.32985 -28.69863 -26.62338 -24.96343 -23.79118 -23.29362 -21.89061 -20.26380 -20.05818 -19.52106 -18.78541 -18.63247 -17.97162 -16.95372 -16.79323 -16.32623 -15.98645 -15.72295 -15.11158 -14.87790 -14.63421 -14.23009 -14.17606 -14.06085 -13.75842 -13.35101 -12.94417 -12.71379 -12.69069 -12.47112 -12.26248 -12.23849 -11.83824 -11.73446 -11.52445 -11.29786 -10.81749 -10.17719 -10.08514 -9.56300 -8.30081 -6.46451 -1.19683 -0.05732 0.25564 0.42888 1.40691 1.47593 1.48325 1.56677 1.86815 2.33316 2.37641 3.05874 3.20850 3.36090 3.38172 3.79406 3.79812 4.12425 4.33421 4.48831 4.63483 4.75105 4.89558 4.94016 5.04610 5.09042 5.10922 5.23295 5.35800 5.40336 5.54984 5.62001 5.79820 6.01639 6.59126 6.63925 7.03198 7.23045 7.45418 8.81599 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.048512 B = 0.002936 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.033391 B = 9534.876650 C = 9986.172154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.011 3.989 3 C -0.140 4.140 4 C 0.231 3.769 5 N -0.667 5.667 6 C 0.692 3.308 7 O -0.620 6.620 8 N -0.708 5.708 9 C 0.283 3.717 10 C -0.556 4.556 11 H 0.087 0.913 12 C 0.006 3.994 13 N -0.930 5.930 14 Si 0.983 3.017 15 H -0.262 1.262 16 H -0.288 1.288 17 H -0.262 1.262 18 C -0.147 4.147 19 C -0.033 4.033 20 C -0.091 4.091 21 N 0.040 4.960 22 O -0.222 6.222 23 O -0.148 6.148 24 H 0.101 0.899 25 H 0.102 0.898 26 H 0.086 0.914 27 H 0.190 0.810 28 H 0.433 0.567 29 H 0.410 0.590 30 H -0.008 1.008 31 H -0.009 1.009 32 H 0.269 0.731 33 H 0.140 0.860 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.565 -2.500 8.836 20.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.009 3.991 3 C -0.161 4.161 4 C 0.132 3.868 5 N -0.316 5.316 6 C 0.392 3.608 7 O -0.500 6.500 8 N -0.361 5.361 9 C 0.160 3.840 10 C -0.594 4.594 11 H 0.105 0.895 12 C -0.194 4.194 13 N -0.568 5.568 14 Si 0.806 3.194 15 H -0.187 1.187 16 H -0.214 1.214 17 H -0.186 1.186 18 C -0.168 4.168 19 C -0.052 4.052 20 C -0.176 4.176 21 N 0.551 4.449 22 O -0.423 6.423 23 O -0.368 6.368 24 H 0.120 0.880 25 H 0.121 0.879 26 H 0.105 0.895 27 H 0.208 0.792 28 H 0.274 0.726 29 H 0.247 0.753 30 H 0.010 0.990 31 H 0.009 0.991 32 H 0.078 0.922 33 H 0.158 0.842 34 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -17.457 -2.748 8.199 19.481 hybrid contribution 0.621 0.573 0.064 0.847 sum -16.836 -2.176 8.263 18.880 Atomic orbital electron populations 1.21378 0.86362 1.05646 1.05196 1.19924 0.99114 0.89049 0.91024 1.21109 0.90519 0.99272 1.05216 1.18057 0.91460 0.85290 0.91967 1.42538 1.22496 1.13903 1.52702 1.16232 0.80629 0.84298 0.79634 1.90901 1.67613 1.38292 1.53168 1.45327 1.25676 1.08847 1.56265 1.18513 0.79279 0.96602 0.89583 1.21563 1.08342 0.94343 1.35158 0.89524 1.26013 0.96430 1.02899 0.94070 1.70122 1.16088 1.36415 1.34203 0.85234 0.77447 0.77880 0.78831 1.18664 1.21413 1.18647 1.21290 1.01798 0.90426 1.03293 1.20892 0.90954 1.00329 0.93073 1.21054 0.92379 0.83005 1.21151 1.43716 1.01016 1.03153 0.97010 1.94546 1.70448 1.20859 1.56433 1.94403 0.96682 1.93901 1.51836 0.88047 0.87906 0.89544 0.79249 0.72640 0.75324 0.98978 0.99109 0.92238 0.84186 0.82760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 8.68 71.24 0.62 -0.99 16 2 C 0.01 0.20 5.88 -19.88 -0.12 0.09 16 3 C -0.14 -2.18 9.59 22.39 0.21 -1.96 16 4 C 0.23 5.19 6.29 38.15 0.24 5.43 16 5 N -0.67 -15.07 5.34 -317.18 -1.69 -16.77 16 6 C 0.69 24.38 8.41 179.05 1.51 25.88 16 7 O -0.62 -27.81 13.82 -3.97 -0.05 -27.86 16 8 N -0.71 -26.19 5.55 -482.30 -2.68 -28.86 16 9 C 0.28 14.35 5.43 85.63 0.46 14.81 16 10 C -0.56 -28.16 9.28 25.60 0.24 -27.92 16 11 H 0.09 3.88 7.60 -2.91 -0.02 3.86 16 12 C 0.01 0.31 5.46 84.65 0.46 0.77 16 13 N -0.93 -53.89 13.29 21.45 0.28 -53.61 16 14 Si 0.98 40.17 29.54 68.60 2.03 42.20 16 15 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 16 H -0.29 -11.89 7.11 99.48 0.71 -11.18 16 17 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 18 C -0.15 -3.97 8.70 22.39 0.19 -3.78 16 19 C -0.03 -0.82 9.55 22.25 0.21 -0.61 16 20 C -0.09 -2.16 6.83 36.39 0.25 -1.91 16 21 N 0.04 1.08 4.45 -46.41 -0.21 0.88 16 22 O -0.22 -6.74 18.46 18.89 0.35 -6.39 16 23 O -0.15 -3.73 15.34 18.88 0.29 -3.44 16 24 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.10 0.71 8.04 -2.38 -0.02 0.69 16 26 H 0.09 1.35 5.84 -2.38 -0.01 1.34 16 27 H 0.19 1.37 8.06 -2.91 -0.02 1.35 16 28 H 0.43 5.79 8.84 -92.71 -0.82 4.97 16 29 H 0.41 11.76 8.34 -92.71 -0.77 10.98 16 30 H -0.01 -0.45 8.14 -2.38 -0.02 -0.46 16 31 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 32 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 33 H 0.14 4.54 6.27 -2.91 -0.02 4.52 16 34 H 0.15 3.68 7.62 -2.91 -0.02 3.66 16 Total: -1.00 -70.92 304.54 2.18 -68.74 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -0.42 Total: 15.30 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: 4.28 Total: 9.82 kcal Atomic # 7 Polarization: -94.07 SS G_CDS: -4.29 Total: -98.36 kcal Atomic # 8 Polarization: -38.28 SS G_CDS: 0.58 Total: -37.70 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal Total: -70.92 2.18 -68.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338329735.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.158 kcal (2) G-P(sol) polarization free energy of solvation -70.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds