Wall clock time and date at job start Tue Mar 31 2020 01:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37880 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00461 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99611 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46840 * 180.02562 * 10 9 7 12 12 C 1.39712 * 120.00096 * 180.02562 * 11 10 9 13 13 C 1.39031 * 119.99964 * 359.72711 * 12 11 10 14 14 C 1.38203 * 120.21540 * 179.74106 * 13 12 11 15 15 C 1.38031 * 120.22889 * 0.56113 * 14 13 12 16 16 C 1.39578 * 120.00407 * 359.69401 * 15 14 13 17 17 C 1.47864 * 120.10923 * 180.02562 * 16 15 14 18 18 N 1.34776 * 119.99683 * 0.02562 * 17 16 15 19 19 O 1.21548 * 119.99691 * 180.02562 * 17 16 15 20 20 C 1.38634 * 120.00851 * 180.02562 * 12 11 10 21 21 N 1.48027 * 120.11095 * 359.95278 * 20 12 11 22 22 O 1.21803 * 119.99445 * 89.99930 * 21 20 12 23 23 O 1.21799 * 120.00186 * 270.00372 * 21 20 12 24 24 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 26 26 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 27 27 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 28 28 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 29 29 H 0.97000 * 120.00420 * 0.02562 * 11 10 9 30 30 H 1.07990 * 119.89361 * 0.02562 * 13 12 11 31 31 H 1.07998 * 119.88753 * 180.25516 * 14 13 12 32 32 H 1.08001 * 119.99827 * 179.72314 * 15 14 13 33 33 H 0.96997 * 120.00159 * 0.02562 * 18 17 16 34 34 H 0.97000 * 119.99568 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 7 5.4864 -2.6366 -0.0009 12 6 6.1850 -3.8465 -0.0014 13 6 5.4899 -5.0506 0.0039 14 6 6.1764 -6.2501 -0.0019 15 6 7.5566 -6.2608 -0.0013 16 6 8.2640 -5.0575 -0.0012 17 6 9.7426 -5.0663 -0.0011 18 7 10.4095 -6.2375 -0.0016 19 8 10.3565 -4.0173 -0.0006 20 6 7.5714 -3.8467 -0.0008 21 7 8.3141 -2.5663 -0.0008 22 8 8.6192 -2.0394 1.0541 23 8 8.6201 -2.0397 -1.0555 24 1 -0.4850 0.8401 0.0004 25 1 3.8751 -0.6805 0.8889 26 1 3.8745 -0.6801 -0.8910 27 1 3.6584 -3.1503 0.8892 28 1 3.6578 -3.1506 -0.8908 29 1 5.9715 -1.7966 -0.0006 30 1 4.4100 -5.0486 0.0079 31 1 5.6310 -7.1822 -0.0019 32 1 8.0893 -7.2003 -0.0013 33 1 9.9195 -7.0746 -0.0024 34 1 11.3795 -6.2432 -0.0012 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342835828.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:51 Heat of formation + Delta-G solvation = -38.796469 kcal Electronic energy + Delta-G solvation = -21269.373528 eV Core-core repulsion = 17783.387929 eV Total energy + Delta-G solvation = -3485.985599 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.28507 -41.26817 -40.06259 -37.53654 -37.49212 -35.37677 -34.88275 -33.19105 -32.61864 -30.23237 -27.62897 -26.84074 -25.07225 -23.34798 -22.84104 -21.71194 -20.42804 -19.83390 -19.27251 -19.00822 -18.75862 -17.82964 -17.28973 -16.68385 -16.33352 -16.28530 -16.04038 -16.03519 -15.29290 -15.18123 -14.70640 -14.41834 -13.70278 -13.44694 -13.22756 -12.99079 -12.77687 -12.44896 -12.26444 -12.24746 -12.11837 -11.91129 -11.59379 -11.53039 -11.37579 -10.96892 -10.84716 -10.54939 -8.96874 -8.37610 -6.42719 -0.74500 -0.58292 0.01343 0.43039 1.30430 1.33781 1.42686 1.52321 1.87218 2.23355 2.28013 2.40867 2.97914 3.39107 3.50569 3.70620 3.85622 4.01163 4.12910 4.28279 4.31986 4.63551 4.71278 4.87443 5.00433 5.12030 5.19566 5.26013 5.38541 5.48026 5.63308 5.83239 6.04357 6.14285 6.18338 6.41668 6.64490 7.02369 7.22670 8.77766 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.027474 B = 0.004246 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.888766 B = 6592.379598 C = 7472.574468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.017 3.983 3 Si 0.939 3.061 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.257 1.257 7 C -0.529 4.529 8 H 0.052 0.948 9 C -0.022 4.022 10 C 0.146 3.854 11 N -0.743 5.743 12 C 0.247 3.753 13 C -0.161 4.161 14 C -0.021 4.021 15 C -0.109 4.109 16 C -0.073 4.073 17 C 0.548 3.452 18 N -0.807 5.807 19 O -0.586 6.586 20 C -0.105 4.105 21 N 0.045 4.955 22 O -0.171 6.171 23 O -0.170 6.170 24 H 0.269 0.731 25 H 0.020 0.980 26 H 0.019 0.981 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.391 0.609 30 H 0.163 0.837 31 H 0.200 0.800 32 H 0.197 0.803 33 H 0.425 0.575 34 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.446 -21.079 -0.006 26.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.182 4.182 3 Si 0.763 3.237 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.181 1.181 7 C -0.567 4.567 8 H 0.071 0.929 9 C -0.060 4.060 10 C 0.024 3.976 11 N -0.367 5.367 12 C 0.137 3.863 13 C -0.184 4.184 14 C -0.039 4.039 15 C -0.130 4.130 16 C -0.078 4.078 17 C 0.333 3.667 18 N -0.373 5.373 19 O -0.467 6.467 20 C -0.192 4.192 21 N 0.571 4.429 22 O -0.392 6.392 23 O -0.391 6.391 24 H 0.078 0.922 25 H 0.038 0.962 26 H 0.037 0.963 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.224 0.776 30 H 0.180 0.820 31 H 0.217 0.783 32 H 0.214 0.786 33 H 0.259 0.741 34 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 15.892 -20.914 -0.002 26.267 hybrid contribution 0.585 1.920 -0.016 2.007 sum 16.477 -18.993 -0.018 25.144 Atomic orbital electron populations 1.70004 1.07872 1.28303 1.51742 1.25789 0.95498 1.02839 0.94033 0.85831 0.79347 0.79397 0.79119 1.19351 1.20607 1.18120 1.21124 0.90434 0.93942 1.51220 0.92946 1.19675 0.95457 0.93921 0.96930 1.21406 0.75590 0.98712 1.01937 1.45407 1.07799 1.04729 1.78785 1.17744 0.86514 0.89605 0.92415 1.21414 1.02137 0.89254 1.05615 1.21781 0.93546 0.98852 0.89757 1.21650 0.94882 0.95686 1.00758 1.19586 0.93162 0.91895 1.03151 1.18409 0.87385 0.84946 0.75987 1.43336 1.11938 1.07173 1.74813 1.90945 1.70390 1.33708 1.51660 1.20536 0.90513 0.82810 1.25337 1.43520 0.97802 1.02123 0.99455 1.94484 1.57373 1.66174 1.21139 1.94482 1.57293 1.66187 1.21150 0.92203 0.96192 0.96288 0.90773 0.90744 0.77642 0.81968 0.78324 0.78649 0.74101 0.74779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.70 13.96 21.45 0.30 -56.40 16 2 C 0.02 0.96 5.47 84.66 0.46 1.43 16 3 Si 0.94 44.07 27.47 68.60 1.88 45.95 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.26 -11.62 6.54 99.48 0.65 -10.97 16 7 C -0.53 -28.66 9.66 25.60 0.25 -28.41 16 8 H 0.05 3.01 7.99 -2.91 -0.02 2.99 16 9 C -0.02 -0.99 4.16 29.85 0.12 -0.86 16 10 C 0.15 5.12 4.85 86.38 0.42 5.54 16 11 N -0.74 -24.89 5.72 -339.51 -1.94 -26.83 16 12 C 0.25 6.97 6.65 38.17 0.25 7.23 16 13 C -0.16 -3.01 9.31 22.45 0.21 -2.80 16 14 C -0.02 -0.20 10.02 22.21 0.22 0.03 16 15 C -0.11 -1.07 9.54 22.54 0.22 -0.86 16 16 C -0.07 -1.62 5.87 -20.10 -0.12 -1.74 16 17 C 0.55 12.90 8.05 86.79 0.70 13.60 16 18 N -0.81 -7.94 8.82 -175.59 -1.55 -9.49 16 19 O -0.59 -20.98 15.28 14.73 0.23 -20.76 16 20 C -0.10 -3.24 6.18 36.77 0.23 -3.01 16 21 N 0.05 1.77 1.66 -45.51 -0.08 1.69 16 22 O -0.17 -7.18 18.93 22.49 0.43 -6.76 16 23 O -0.17 -7.14 18.92 22.50 0.43 -6.71 16 24 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 25 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 26 H 0.02 0.85 7.57 -2.39 -0.02 0.83 16 27 H 0.07 2.46 7.94 -2.39 -0.02 2.44 16 28 H 0.07 2.47 7.95 -2.39 -0.02 2.45 16 29 H 0.39 14.40 7.72 -92.71 -0.72 13.68 16 30 H 0.16 2.73 6.71 -2.92 -0.02 2.71 16 31 H 0.20 -0.09 8.06 -2.91 -0.02 -0.11 16 32 H 0.20 -0.30 6.40 -2.91 -0.02 -0.32 16 33 H 0.42 0.22 6.86 -92.71 -0.64 -0.42 16 34 H 0.42 3.26 8.93 -92.71 -0.83 2.43 16 Total: -1.00 -83.47 302.89 1.61 -81.86 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -1.04 Total: 7.30 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: 2.96 Total: -9.86 kcal Atomic # 7 Polarization: -87.76 SS G_CDS: -3.27 Total: -91.03 kcal Atomic # 8 Polarization: -35.30 SS G_CDS: 1.08 Total: -34.23 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.88 Total: 45.95 kcal Total: -83.47 1.61 -81.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342835828.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.060 kcal (2) G-P(sol) polarization free energy of solvation -83.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds