Wall clock time and date at job start Tue Mar 31 2020 01:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00212 * 2 1 4 4 H 1.48504 * 109.47230 * 270.00263 * 3 2 1 5 5 H 1.48496 * 109.47062 * 30.00585 * 3 2 1 6 6 H 1.48500 * 109.47140 * 150.00753 * 3 2 1 7 7 C 1.37876 * 119.99682 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00393 * 359.97438 * 7 2 1 9 9 C 1.50709 * 120.00038 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47251 * 179.97438 * 9 7 2 11 11 N 1.46502 * 109.47118 * 180.02562 * 10 9 7 12 12 C 1.30766 * 119.99878 * 114.47431 * 11 10 9 13 13 N 1.38364 * 121.43813 * 354.01368 * 12 11 10 14 14 H 0.96998 * 119.95388 * 359.97438 * 13 12 11 15 15 C 1.36105 * 120.09925 * 179.97438 * 13 12 11 16 16 N 1.29646 * 123.35820 * 359.97438 * 15 13 12 17 17 C 1.35940 * 122.15783 * 359.97438 * 16 15 13 18 18 C 1.39511 * 121.37063 * 180.02562 * 17 16 15 19 19 C 1.37991 * 119.74155 * 180.23201 * 18 17 16 20 20 F 1.35101 * 119.64661 * 179.72529 * 19 18 17 21 21 C 1.39195 * 120.69804 * 359.48788 * 19 18 17 22 22 F 1.35097 * 119.80074 * 180.23714 * 21 19 18 23 23 C 1.38044 * 120.40613 * 0.51250 * 21 19 18 24 24 C 1.39127 * 119.56181 * 359.75099 * 23 21 19 25 25 H 0.97003 * 119.99424 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.46736 * 59.99544 * 9 7 2 27 27 H 1.08998 * 109.46989 * 299.99787 * 9 7 2 28 28 H 1.08994 * 109.47173 * 60.00213 * 10 9 7 29 29 H 1.08998 * 109.47132 * 299.99923 * 10 9 7 30 30 H 1.07996 * 118.32299 * 179.97438 * 15 13 12 31 31 H 1.07994 * 120.12584 * 359.95392 * 18 17 16 32 32 H 1.07996 * 120.21530 * 179.76668 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5469 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1942 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 7 5.4865 -2.6367 -0.0009 12 6 6.1403 -3.1058 1.0298 13 7 5.4842 -3.4958 2.1840 14 1 4.5186 -3.4233 2.2402 15 6 6.1919 -3.9809 3.2406 16 7 7.4822 -4.1064 3.2371 17 6 8.2401 -3.7591 2.1633 18 6 9.6278 -3.9016 2.1772 19 6 10.3648 -3.5340 1.0701 20 9 11.7091 -3.6676 1.0877 21 6 9.7375 -3.0316 -0.0664 22 9 10.4764 -2.6818 -1.1420 23 6 8.3654 -2.8834 -0.0992 24 6 7.6093 -3.2446 1.0113 25 1 -0.4849 0.8401 0.0004 26 1 3.8752 -0.6805 0.8888 27 1 3.8746 -0.6802 -0.8911 28 1 3.6579 -3.1506 -0.8907 29 1 3.6585 -3.1502 0.8892 30 1 5.6508 -4.2764 4.1273 31 1 10.1237 -4.2939 3.0527 32 1 7.8823 -2.4898 -0.9812 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343618667.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:11 Heat of formation + Delta-G solvation = -20.090366 kcal Electronic energy + Delta-G solvation = -20396.500250 eV Core-core repulsion = 16800.238293 eV Total energy + Delta-G solvation = -3596.261957 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.088 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.62333 -48.67764 -41.05998 -37.86731 -36.23914 -33.66666 -32.46512 -31.59513 -30.41525 -29.03064 -25.64596 -24.52612 -23.80631 -21.88765 -20.68780 -19.66586 -18.77937 -18.19905 -17.26476 -16.93555 -16.49350 -16.32368 -15.89646 -15.11032 -15.08254 -14.58207 -14.44538 -14.26599 -14.22598 -13.80620 -13.49272 -12.97090 -12.72446 -12.39521 -12.05016 -11.85914 -11.54482 -11.25983 -10.57318 -10.42868 -10.12997 -9.94918 -9.57373 -9.45243 -9.22421 -9.01573 -8.67832 -7.65783 -6.19277 -4.19840 0.23028 0.47754 2.03167 2.36693 2.73241 3.22848 3.30512 3.34553 3.47430 3.67349 3.74162 3.93744 4.22908 4.33283 4.35418 4.75472 4.84070 5.12487 5.14862 5.29698 5.40505 5.55958 5.67069 5.69089 5.91363 6.11745 6.22861 6.43298 6.51032 6.83131 7.07621 7.15204 7.59153 7.72833 8.03842 8.34090 8.82236 9.42358 10.93403 Molecular weight = 279.09amu Principal moments of inertia in cm(-1) A = 0.023952 B = 0.004064 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.701995 B = 6888.159124 C = 7575.535320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.880 3.120 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.529 4.529 8 H 0.073 0.927 9 C -0.004 4.004 10 C 0.060 3.940 11 N -0.535 5.535 12 C 0.379 3.621 13 N -0.676 5.676 14 H 0.425 0.575 15 C 0.404 3.596 16 N -0.556 5.556 17 C 0.169 3.831 18 C -0.125 4.125 19 C 0.102 3.898 20 F -0.125 7.125 21 C 0.042 3.958 22 F -0.127 7.127 23 C -0.052 4.052 24 C -0.090 4.090 25 H 0.265 0.735 26 H 0.013 0.987 27 H 0.024 0.976 28 H 0.088 0.912 29 H 0.030 0.970 30 H 0.201 0.799 31 H 0.157 0.843 32 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.251 -9.053 6.390 20.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.707 3.293 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.567 4.567 8 H 0.091 0.909 9 C -0.042 4.042 10 C -0.068 4.068 11 N -0.256 5.256 12 C 0.105 3.895 13 N -0.310 5.310 14 H 0.266 0.734 15 C 0.113 3.887 16 N -0.280 5.280 17 C 0.060 3.940 18 C -0.146 4.146 19 C 0.080 3.920 20 F -0.104 7.104 21 C 0.021 3.979 22 F -0.106 7.106 23 C -0.073 4.073 24 C -0.096 4.096 25 H 0.075 0.925 26 H 0.031 0.969 27 H 0.042 0.958 28 H 0.106 0.894 29 H 0.048 0.952 30 H 0.217 0.783 31 H 0.175 0.825 32 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 17.814 -8.792 5.975 20.744 hybrid contribution -0.646 1.070 -0.170 1.262 sum 17.168 -7.722 5.805 19.699 Atomic orbital electron populations 1.69903 1.06276 1.27169 1.50296 1.24970 0.94723 0.99188 0.94156 0.86774 0.80205 0.83473 0.78829 1.19999 1.21218 1.19185 1.21006 0.88901 0.94700 1.52130 0.90871 1.19571 0.96907 0.90577 0.97138 1.22154 0.83270 1.00958 1.00452 1.72836 1.12242 1.18327 1.22213 1.20764 0.91084 0.93688 0.83970 1.44372 1.12873 1.59737 1.14031 0.73357 1.24683 0.88960 0.84877 0.90131 1.68533 1.04045 1.28416 1.26977 1.18253 0.92889 0.94174 0.88715 1.20475 0.91726 1.04131 0.98293 1.17565 0.77738 1.02245 0.94413 1.91541 1.28526 1.93536 1.96778 1.17449 0.89517 1.06369 0.84605 1.91534 1.76413 1.90014 1.52605 1.20894 0.90234 0.96634 0.99587 1.18786 0.89993 1.05325 0.95518 0.92495 0.96888 0.95771 0.89416 0.95154 0.78282 0.82501 0.81906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.78 13.96 55.43 0.77 -26.01 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 7 C -0.53 -14.38 9.66 -34.44 -0.33 -14.72 16 8 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 9 C 0.00 -0.09 4.37 -27.88 -0.12 -0.21 16 10 C 0.06 1.14 6.23 -4.04 -0.03 1.11 16 11 N -0.54 -9.31 9.99 -58.37 -0.58 -9.89 16 12 C 0.38 5.58 7.68 -153.55 -1.18 4.40 16 13 N -0.68 -7.77 5.29 -11.65 -0.06 -7.83 16 14 H 0.42 4.56 6.42 -40.82 -0.26 4.30 16 15 C 0.40 3.65 12.29 -90.10 -1.11 2.54 16 16 N -0.56 -6.22 10.34 -12.01 -0.12 -6.34 16 17 C 0.17 2.08 6.62 -84.50 -0.56 1.52 16 18 C -0.13 -1.37 9.99 -39.20 -0.39 -1.76 16 19 C 0.10 1.19 7.29 -39.32 -0.29 0.91 16 20 F -0.13 -1.48 17.16 2.25 0.04 -1.44 16 21 C 0.04 0.52 7.30 -39.30 -0.29 0.23 16 22 F -0.13 -1.67 17.16 2.25 0.04 -1.63 16 23 C -0.05 -0.68 9.63 -39.32 -0.38 -1.06 16 24 C -0.09 -1.23 5.90 -104.70 -0.62 -1.84 16 25 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 27 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 28 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 29 H 0.03 0.51 5.61 -51.93 -0.29 0.22 16 30 H 0.20 0.81 8.06 -52.49 -0.42 0.39 16 31 H 0.16 1.41 8.06 -52.49 -0.42 0.98 16 32 H 0.16 2.14 7.75 -52.49 -0.41 1.73 16 LS Contribution 289.65 15.07 4.36 4.36 Total: -1.00 -31.71 289.65 -8.19 -39.89 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: -2.58 Total: -0.90 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -5.39 Total: -6.95 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: 0.00 Total: -50.07 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.08 Total: -3.07 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.71 -8.19 -39.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343618667.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.803 kcal (2) G-P(sol) polarization free energy of solvation -31.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds