Wall clock time and date at job start Tue Mar 31 2020 01:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00212 * 2 1 4 4 H 1.48504 * 109.47230 * 270.00263 * 3 2 1 5 5 H 1.48496 * 109.47062 * 30.00585 * 3 2 1 6 6 H 1.48500 * 109.47140 * 150.00753 * 3 2 1 7 7 C 1.37876 * 119.99682 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00393 * 359.97438 * 7 2 1 9 9 C 1.50709 * 120.00038 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47251 * 179.97438 * 9 7 2 11 11 N 1.46502 * 109.47118 * 180.02562 * 10 9 7 12 12 C 1.30766 * 119.99878 * 114.47431 * 11 10 9 13 13 N 1.38364 * 121.43813 * 354.01368 * 12 11 10 14 14 H 0.96998 * 119.95388 * 359.97438 * 13 12 11 15 15 C 1.36105 * 120.09925 * 179.97438 * 13 12 11 16 16 N 1.29646 * 123.35820 * 359.97438 * 15 13 12 17 17 C 1.35940 * 122.15783 * 359.97438 * 16 15 13 18 18 C 1.39511 * 121.37063 * 180.02562 * 17 16 15 19 19 C 1.37991 * 119.74155 * 180.23201 * 18 17 16 20 20 F 1.35101 * 119.64661 * 179.72529 * 19 18 17 21 21 C 1.39195 * 120.69804 * 359.48788 * 19 18 17 22 22 F 1.35097 * 119.80074 * 180.23714 * 21 19 18 23 23 C 1.38044 * 120.40613 * 0.51250 * 21 19 18 24 24 C 1.39127 * 119.56181 * 359.75099 * 23 21 19 25 25 H 0.97003 * 119.99424 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.46736 * 59.99544 * 9 7 2 27 27 H 1.08998 * 109.46989 * 299.99787 * 9 7 2 28 28 H 1.08994 * 109.47173 * 60.00213 * 10 9 7 29 29 H 1.08998 * 109.47132 * 299.99923 * 10 9 7 30 30 H 1.07996 * 118.32299 * 179.97438 * 15 13 12 31 31 H 1.07994 * 120.12584 * 359.95392 * 18 17 16 32 32 H 1.07996 * 120.21530 * 179.76668 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5469 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1942 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 7 5.4865 -2.6367 -0.0009 12 6 6.1403 -3.1058 1.0298 13 7 5.4842 -3.4958 2.1840 14 1 4.5186 -3.4233 2.2402 15 6 6.1919 -3.9809 3.2406 16 7 7.4822 -4.1064 3.2371 17 6 8.2401 -3.7591 2.1633 18 6 9.6278 -3.9016 2.1772 19 6 10.3648 -3.5340 1.0701 20 9 11.7091 -3.6676 1.0877 21 6 9.7375 -3.0316 -0.0664 22 9 10.4764 -2.6818 -1.1420 23 6 8.3654 -2.8834 -0.0992 24 6 7.6093 -3.2446 1.0113 25 1 -0.4849 0.8401 0.0004 26 1 3.8752 -0.6805 0.8888 27 1 3.8746 -0.6802 -0.8911 28 1 3.6579 -3.1506 -0.8907 29 1 3.6585 -3.1502 0.8892 30 1 5.6508 -4.2764 4.1273 31 1 10.1237 -4.2939 3.0527 32 1 7.8823 -2.4898 -0.9812 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343618667.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:11 Heat of formation + Delta-G solvation = -39.344661 kcal Electronic energy + Delta-G solvation = -20397.335179 eV Core-core repulsion = 16800.238293 eV Total energy + Delta-G solvation = -3597.096886 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.088 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.59070 -49.65635 -42.02781 -38.87962 -37.38310 -35.39663 -33.87115 -32.80571 -31.66428 -30.27408 -27.15814 -25.41453 -25.06376 -23.15702 -22.15237 -20.68520 -19.73238 -19.44638 -18.74727 -18.20433 -17.45927 -17.29481 -17.01894 -16.46074 -16.07754 -16.01804 -15.68029 -15.35948 -15.23886 -15.06461 -14.84301 -14.56028 -13.91253 -13.76317 -13.32769 -13.13877 -12.86163 -12.75420 -12.29173 -12.04774 -11.85269 -11.55019 -11.06558 -10.84040 -10.61881 -10.46796 -10.03912 -8.72846 -8.35748 -6.40501 -0.70833 -0.47857 1.04779 1.31142 1.33059 1.38379 1.43653 1.77736 2.29764 2.53700 2.71230 2.74311 2.99248 2.99719 3.29594 3.46332 3.74789 4.01561 4.11409 4.21314 4.37771 4.46967 4.53624 4.61313 4.76321 4.78427 4.94952 5.20100 5.21055 5.36706 5.50958 5.56321 5.94645 6.18629 6.66338 6.79632 6.92519 7.25411 8.80017 Molecular weight = 279.09amu Principal moments of inertia in cm(-1) A = 0.023952 B = 0.004064 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.701995 B = 6888.159124 C = 7575.535320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.016 3.984 3 Si 0.944 3.056 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.257 1.257 7 C -0.532 4.532 8 H 0.045 0.955 9 C 0.003 3.997 10 C 0.073 3.927 11 N -0.576 5.576 12 C 0.393 3.607 13 N -0.674 5.674 14 H 0.429 0.571 15 C 0.413 3.587 16 N -0.565 5.565 17 C 0.171 3.829 18 C -0.115 4.115 19 C 0.109 3.891 20 F -0.124 7.124 21 C 0.033 3.967 22 F -0.134 7.134 23 C -0.052 4.052 24 C -0.114 4.114 25 H 0.268 0.732 26 H 0.012 0.988 27 H 0.013 0.987 28 H 0.075 0.925 29 H 0.048 0.952 30 H 0.255 0.745 31 H 0.182 0.818 32 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.986 -9.377 8.296 22.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.183 4.183 3 Si 0.768 3.232 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.182 1.182 7 C -0.571 4.571 8 H 0.063 0.937 9 C -0.035 4.035 10 C -0.056 4.056 11 N -0.299 5.299 12 C 0.119 3.881 13 N -0.307 5.307 14 H 0.272 0.728 15 C 0.125 3.875 16 N -0.288 5.288 17 C 0.061 3.939 18 C -0.136 4.136 19 C 0.087 3.913 20 F -0.103 7.103 21 C 0.012 3.988 22 F -0.112 7.112 23 C -0.074 4.074 24 C -0.120 4.120 25 H 0.077 0.923 26 H 0.030 0.970 27 H 0.031 0.969 28 H 0.093 0.907 29 H 0.066 0.934 30 H 0.270 0.730 31 H 0.199 0.801 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 19.565 -9.142 7.915 23.000 hybrid contribution -1.113 1.035 -0.661 1.657 sum 18.451 -8.107 7.255 21.420 Atomic orbital electron populations 1.70030 1.07950 1.28252 1.52008 1.25825 0.95477 1.02932 0.94017 0.85759 0.79194 0.79173 0.79071 1.19576 1.20461 1.18153 1.21317 0.91120 0.93608 1.51006 0.93704 1.19414 0.94112 0.93670 0.96333 1.21779 0.84974 0.98031 1.00857 1.72820 1.10591 1.22328 1.24149 1.21010 0.91694 0.91372 0.84065 1.44478 1.13270 1.59283 1.13718 0.72829 1.25759 0.88566 0.82710 0.90439 1.68617 1.04877 1.28973 1.26315 1.18456 0.93570 0.93377 0.88481 1.20676 0.91187 1.03126 0.98592 1.17595 0.77754 1.01650 0.94252 1.91548 1.28523 1.93458 1.96758 1.17497 0.89369 1.07086 0.84884 1.91516 1.76487 1.90191 1.53028 1.20834 0.90481 0.96630 0.99429 1.18860 0.89445 1.07196 0.96474 0.92273 0.96957 0.96855 0.90712 0.93379 0.72988 0.80111 0.82648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.14 13.96 21.45 0.30 -56.84 16 2 C 0.02 0.89 5.47 84.65 0.46 1.35 16 3 Si 0.94 44.09 27.47 68.60 1.88 45.98 16 4 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.26 -11.52 6.54 99.48 0.65 -10.87 16 7 C -0.53 -29.41 9.66 25.60 0.25 -29.16 16 8 H 0.04 2.66 7.99 -2.91 -0.02 2.64 16 9 C 0.00 0.13 4.37 29.85 0.13 0.26 16 10 C 0.07 2.75 6.23 86.38 0.54 3.29 16 11 N -0.58 -19.81 9.99 -338.60 -3.38 -23.19 16 12 C 0.39 11.01 7.68 136.01 1.05 12.06 16 13 N -0.67 -13.76 5.29 -190.78 -1.01 -14.77 16 14 H 0.43 8.17 6.42 -92.71 -0.60 7.58 16 15 C 0.41 5.86 12.29 180.17 2.21 8.08 16 16 N -0.57 -10.60 10.34 -191.91 -1.98 -12.58 16 17 C 0.17 3.77 6.62 39.51 0.26 4.03 16 18 C -0.12 -2.20 9.99 22.52 0.22 -1.97 16 19 C 0.11 2.34 7.29 22.44 0.16 2.51 16 20 F -0.12 -2.69 17.16 44.97 0.77 -1.92 16 21 C 0.03 0.79 7.30 22.45 0.16 0.95 16 22 F -0.13 -3.45 17.16 44.97 0.77 -2.68 16 23 C -0.05 -1.34 9.63 22.44 0.22 -1.12 16 24 C -0.11 -2.92 5.90 -19.91 -0.12 -3.04 16 25 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 26 H 0.01 0.56 7.20 -2.39 -0.02 0.55 16 27 H 0.01 0.63 7.57 -2.39 -0.02 0.62 16 28 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 29 H 0.05 1.58 5.61 -2.39 -0.01 1.57 16 30 H 0.25 0.68 8.06 -2.91 -0.02 0.66 16 31 H 0.18 2.56 8.06 -2.91 -0.02 2.54 16 32 H 0.16 4.16 7.75 -2.91 -0.02 4.14 16 Total: -1.00 -69.06 289.65 3.44 -65.62 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: 0.54 Total: 3.16 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: 5.55 Total: -2.78 kcal Atomic # 7 Polarization: -101.31 SS G_CDS: -6.07 Total: -107.38 kcal Atomic # 9 Polarization: -6.14 SS G_CDS: 1.54 Total: -4.60 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.88 Total: 45.98 kcal Total: -69.06 3.44 -65.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343618667.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.276 kcal (2) G-P(sol) polarization free energy of solvation -69.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds