Wall clock time and date at job start Tue Mar 31 2020 00:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46504 * 119.99858 * 2 1 4 4 H 1.08996 * 110.43036 * 185.41438 * 3 2 1 5 5 C 1.54109 * 110.48403 * 307.95406 * 3 2 1 6 6 O 1.43737 * 107.29198 * 116.64906 * 5 3 2 7 7 C 1.44385 * 106.97792 * 26.51345 * 6 5 3 8 8 C 1.54808 * 110.48851 * 62.72086 * 3 2 1 9 9 H 1.08994 * 110.90445 * 102.24764 * 8 3 2 10 10 O 1.42896 * 110.90842 * 338.64296 * 8 3 2 11 11 S 1.65593 * 120.00070 * 179.97438 * 2 1 3 12 12 O 1.42104 * 104.27906 * 206.07367 * 11 2 1 13 13 O 1.42101 * 104.27929 * 333.92822 * 11 2 1 14 14 C 1.81394 * 104.45159 * 89.99700 * 11 2 1 15 15 C 1.53002 * 109.47536 * 180.02562 * 14 11 2 16 16 C 1.50692 * 109.47198 * 180.02562 * 15 14 11 17 17 H 1.07997 * 120.00329 * 359.97438 * 16 15 14 18 18 C 1.37885 * 120.00126 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99366 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00213 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46936 * 89.99969 * 20 18 16 22 22 H 1.48499 * 109.46931 * 209.99907 * 20 18 16 23 23 H 1.48501 * 109.47066 * 330.00035 * 20 18 16 24 24 H 1.08997 * 109.47409 * 95.60005 * 1 2 3 25 25 H 1.09000 * 109.47146 * 215.60124 * 1 2 3 26 26 H 1.09004 * 109.47439 * 335.59615 * 1 2 3 27 27 H 1.09005 * 109.87350 * 236.07284 * 5 3 2 28 28 H 1.09000 * 109.87773 * 357.07448 * 5 3 2 29 29 H 1.08996 * 110.61984 * 78.43893 * 7 6 5 30 30 H 1.08998 * 110.62251 * 201.43921 * 7 6 5 31 31 H 0.96703 * 113.99578 * 180.02562 * 10 8 3 32 32 H 1.09003 * 109.47340 * 300.00508 * 14 11 2 33 33 H 1.09004 * 109.47149 * 60.00133 * 14 11 2 34 34 H 1.09004 * 109.46619 * 300.00408 * 15 14 11 35 35 H 1.08999 * 109.47262 * 59.99611 * 15 14 11 36 36 H 0.96998 * 119.99564 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 1 3.2683 1.0899 -0.0964 5 6 1.6982 2.1798 -1.1383 6 8 1.1252 3.3490 -0.5296 7 6 1.7726 3.5186 0.7497 8 6 1.8928 2.0704 1.2889 9 1 2.7133 1.9875 2.0015 10 8 0.6633 1.6416 1.8774 11 16 2.2930 -1.4341 0.0006 12 8 3.5395 -1.1188 0.6058 13 8 1.3970 -2.3558 0.6063 14 6 2.5193 -1.8269 -1.7557 15 6 3.2808 -3.1473 -1.8891 16 6 3.4693 -3.4732 -3.3482 17 1 3.0841 -2.8058 -4.1048 18 6 4.1326 -4.6243 -3.7174 19 7 4.6012 -5.4373 -2.7960 20 14 4.3656 -5.0288 -5.5261 21 1 5.6404 -4.4368 -6.0055 22 1 4.4071 -6.5027 -5.7024 23 1 3.2346 -4.4683 -6.3084 24 1 -0.3634 -0.1003 -1.0227 25 1 -0.3633 -0.8356 0.5982 26 1 -0.3634 0.9359 0.4246 27 1 2.5336 2.4661 -1.7773 28 1 0.9435 1.6578 -1.7267 29 1 2.7592 3.9647 0.6245 30 1 1.1574 4.1255 1.4139 31 1 0.4290 2.1148 2.6875 32 1 1.5450 -1.9197 -2.2358 33 1 3.0866 -1.0298 -2.2362 34 1 4.2550 -3.0548 -1.4090 35 1 2.7132 -3.9442 -1.4087 36 1 5.0682 -6.2469 -3.0557 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352344319.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:49 Heat of formation + Delta-G solvation = -155.649579 kcal Electronic energy + Delta-G solvation = -20983.951162 eV Core-core repulsion = 17596.049632 eV Total energy + Delta-G solvation = -3387.901530 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.12550 -36.64638 -36.24239 -35.54883 -35.23782 -33.89303 -31.16221 -30.32981 -28.66606 -26.01449 -25.55107 -22.97195 -21.68804 -21.03162 -18.74388 -18.02914 -17.17462 -16.78652 -16.47810 -16.18294 -15.79923 -15.36469 -15.02940 -14.55745 -14.05561 -13.71959 -13.55055 -13.33511 -13.06866 -12.52789 -12.36221 -12.15607 -12.03794 -11.77609 -11.69897 -11.57601 -11.18560 -11.08668 -10.96941 -10.85438 -10.45263 -10.40436 -10.38631 -9.83004 -9.71366 -9.29408 -8.68913 -8.50929 -6.13050 -4.18688 0.74460 2.95852 3.25689 3.32011 3.34889 3.64305 3.86753 4.22993 4.33214 4.39355 4.50987 4.53170 4.76570 4.89175 5.02530 5.17980 5.22154 5.30089 5.37757 5.53904 5.62813 5.70549 5.77224 5.79420 6.15247 6.31458 6.47814 6.51994 6.68583 7.29093 7.35128 7.42220 7.79979 8.16912 8.84748 9.46134 10.98025 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.030622 B = 0.004629 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.158905 B = 6047.651748 C = 6473.109204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.987 5.987 3 C 0.126 3.874 4 H 0.122 0.878 5 C 0.034 3.966 6 O -0.369 6.369 7 C 0.016 3.984 8 C 0.059 3.941 9 H 0.082 0.918 10 O -0.534 6.534 11 S 2.589 3.411 12 O -0.968 6.968 13 O -0.960 6.960 14 C -0.590 4.590 15 C 0.028 3.972 16 C -0.520 4.520 17 H 0.061 0.939 18 C 0.058 3.942 19 N -0.891 5.891 20 Si 0.900 3.100 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.273 1.273 24 H 0.042 0.958 25 H 0.076 0.924 26 H 0.099 0.901 27 H 0.070 0.930 28 H 0.098 0.902 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.371 0.629 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.033 0.967 35 H 0.033 0.967 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.529 17.777 6.890 20.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.822 5.822 3 C 0.018 3.982 4 H 0.140 0.860 5 C -0.045 4.045 6 O -0.287 6.287 7 C -0.061 4.061 8 C -0.002 4.002 9 H 0.100 0.900 10 O -0.340 6.340 11 S 2.688 3.312 12 O -0.958 6.958 13 O -0.950 6.950 14 C -0.724 4.724 15 C -0.011 4.011 16 C -0.560 4.560 17 H 0.080 0.920 18 C -0.145 4.145 19 N -0.529 5.529 20 Si 0.728 3.272 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.198 1.198 24 H 0.061 0.939 25 H 0.095 0.905 26 H 0.117 0.883 27 H 0.089 0.911 28 H 0.116 0.884 29 H 0.089 0.911 30 H 0.114 0.886 31 H 0.219 0.781 32 H 0.138 0.862 33 H 0.136 0.864 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.372 16.871 7.129 19.393 hybrid contribution 0.318 0.172 -1.091 1.149 sum -6.054 17.043 6.038 19.068 Atomic orbital electron populations 1.21657 0.78093 1.05467 1.00553 1.57424 1.15513 1.19447 1.89852 1.22367 0.97775 0.84931 0.93139 0.86012 1.23670 0.99511 0.86016 0.95282 1.88900 1.62384 1.45582 1.31862 1.24285 0.98593 0.96960 0.86299 1.23696 0.88107 0.92911 0.95524 0.89990 1.86700 1.39162 1.64297 1.43823 1.05774 0.73526 0.72688 0.79244 1.93516 1.44179 1.82917 1.75226 1.93529 1.64644 1.61818 1.75024 1.30509 1.10278 1.10609 1.20978 1.18962 0.94918 0.87196 1.00012 1.21003 1.37138 1.07041 0.90793 0.92041 1.25072 0.95304 0.96060 0.98031 1.69958 1.37281 1.12690 1.32943 0.86463 0.78614 0.77638 0.84534 1.20464 1.20989 1.19750 0.93943 0.90530 0.88255 0.91146 0.88372 0.91096 0.88555 0.78130 0.86168 0.86391 0.94905 0.94850 0.92521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.12 8.57 59.85 0.51 1.63 16 2 N -0.99 -14.01 2.90 -112.97 -0.33 -14.34 16 3 C 0.13 1.51 3.32 -66.40 -0.22 1.29 16 4 H 0.12 1.42 7.06 -51.93 -0.37 1.05 16 5 C 0.03 0.36 7.13 37.74 0.27 0.63 16 6 O -0.37 -4.13 11.52 -35.23 -0.41 -4.53 16 7 C 0.02 0.13 7.45 38.21 0.28 0.42 16 8 C 0.06 0.58 4.44 -24.72 -0.11 0.47 16 9 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 10 O -0.53 -5.30 9.58 -35.23 -0.34 -5.63 16 11 S 2.59 47.58 5.41 -107.50 -0.58 47.00 16 12 O -0.97 -19.83 16.67 -57.54 -0.96 -20.79 16 13 O -0.96 -20.51 16.64 -57.54 -0.96 -21.47 16 14 C -0.59 -11.38 6.11 37.16 0.23 -11.15 16 15 C 0.03 0.72 4.98 -27.89 -0.14 0.58 16 16 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 17 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 20 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 24 H 0.04 0.48 8.02 -51.93 -0.42 0.06 16 25 H 0.08 1.08 7.05 -51.93 -0.37 0.71 16 26 H 0.10 1.19 5.57 -51.93 -0.29 0.91 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.10 1.05 7.11 -51.93 -0.37 0.68 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.37 1.99 9.12 45.56 0.42 2.41 16 32 H 0.12 2.11 8.14 -51.92 -0.42 1.68 16 33 H 0.12 2.00 8.14 -51.92 -0.42 1.58 16 34 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 308.55 15.07 4.65 4.65 Total: -1.00 -36.02 308.55 -7.11 -43.13 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -4.32 Total: 0.92 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: 0.41 Total: -19.31 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.41 Total: -40.14 kcal Atomic # 8 Polarization: -49.76 SS G_CDS: -2.66 Total: -52.42 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 47.58 SS G_CDS: -0.58 Total: 47.00 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -36.02 -7.11 -43.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352344319.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.522 kcal (2) G-P(sol) polarization free energy of solvation -36.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds