Wall clock time and date at job start Tue Mar 31 2020 00:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46504 * 119.99858 * 2 1 4 4 H 1.08996 * 110.43036 * 185.41438 * 3 2 1 5 5 C 1.54109 * 110.48403 * 307.95406 * 3 2 1 6 6 O 1.43737 * 107.29198 * 116.64906 * 5 3 2 7 7 C 1.44385 * 106.97792 * 26.51345 * 6 5 3 8 8 C 1.54808 * 110.48851 * 62.72086 * 3 2 1 9 9 H 1.08994 * 110.90445 * 102.24764 * 8 3 2 10 10 O 1.42896 * 110.90842 * 338.64296 * 8 3 2 11 11 S 1.65593 * 120.00070 * 179.97438 * 2 1 3 12 12 O 1.42104 * 104.27906 * 206.07367 * 11 2 1 13 13 O 1.42101 * 104.27929 * 333.92822 * 11 2 1 14 14 C 1.81394 * 104.45159 * 89.99700 * 11 2 1 15 15 C 1.53002 * 109.47536 * 180.02562 * 14 11 2 16 16 C 1.50692 * 109.47198 * 180.02562 * 15 14 11 17 17 H 1.07997 * 120.00329 * 359.97438 * 16 15 14 18 18 C 1.37885 * 120.00126 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99366 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00213 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46936 * 89.99969 * 20 18 16 22 22 H 1.48499 * 109.46931 * 209.99907 * 20 18 16 23 23 H 1.48501 * 109.47066 * 330.00035 * 20 18 16 24 24 H 1.08997 * 109.47409 * 95.60005 * 1 2 3 25 25 H 1.09000 * 109.47146 * 215.60124 * 1 2 3 26 26 H 1.09004 * 109.47439 * 335.59615 * 1 2 3 27 27 H 1.09005 * 109.87350 * 236.07284 * 5 3 2 28 28 H 1.09000 * 109.87773 * 357.07448 * 5 3 2 29 29 H 1.08996 * 110.61984 * 78.43893 * 7 6 5 30 30 H 1.08998 * 110.62251 * 201.43921 * 7 6 5 31 31 H 0.96703 * 113.99578 * 180.02562 * 10 8 3 32 32 H 1.09003 * 109.47340 * 300.00508 * 14 11 2 33 33 H 1.09004 * 109.47149 * 60.00133 * 14 11 2 34 34 H 1.09004 * 109.46619 * 300.00408 * 15 14 11 35 35 H 1.08999 * 109.47262 * 59.99611 * 15 14 11 36 36 H 0.96998 * 119.99564 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 1 3.2683 1.0899 -0.0964 5 6 1.6982 2.1798 -1.1383 6 8 1.1252 3.3490 -0.5296 7 6 1.7726 3.5186 0.7497 8 6 1.8928 2.0704 1.2889 9 1 2.7133 1.9875 2.0015 10 8 0.6633 1.6416 1.8774 11 16 2.2930 -1.4341 0.0006 12 8 3.5395 -1.1188 0.6058 13 8 1.3970 -2.3558 0.6063 14 6 2.5193 -1.8269 -1.7557 15 6 3.2808 -3.1473 -1.8891 16 6 3.4693 -3.4732 -3.3482 17 1 3.0841 -2.8058 -4.1048 18 6 4.1326 -4.6243 -3.7174 19 7 4.6012 -5.4373 -2.7960 20 14 4.3656 -5.0288 -5.5261 21 1 5.6404 -4.4368 -6.0055 22 1 4.4071 -6.5027 -5.7024 23 1 3.2346 -4.4683 -6.3084 24 1 -0.3634 -0.1003 -1.0227 25 1 -0.3633 -0.8356 0.5982 26 1 -0.3634 0.9359 0.4246 27 1 2.5336 2.4661 -1.7773 28 1 0.9435 1.6578 -1.7267 29 1 2.7592 3.9647 0.6245 30 1 1.1574 4.1255 1.4139 31 1 0.4290 2.1148 2.6875 32 1 1.5450 -1.9197 -2.2358 33 1 3.0866 -1.0298 -2.2362 34 1 4.2550 -3.0548 -1.4090 35 1 2.7132 -3.9442 -1.4087 36 1 5.0682 -6.2469 -3.0557 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352344319.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:48 Heat of formation + Delta-G solvation = -186.337664 kcal Electronic energy + Delta-G solvation = -20985.281897 eV Core-core repulsion = 17596.049632 eV Total energy + Delta-G solvation = -3389.232265 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.102 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.91570 -38.23440 -37.12709 -36.94169 -36.32171 -35.90024 -33.13446 -31.19034 -29.40512 -27.63581 -26.98557 -23.90245 -23.33562 -22.06297 -19.94623 -19.35946 -18.63976 -17.89906 -17.72905 -17.20616 -16.94134 -16.74440 -16.53154 -16.14086 -15.25610 -14.87169 -14.59445 -14.53127 -14.36419 -13.92240 -13.73933 -13.47807 -13.35485 -13.20853 -12.94970 -12.91541 -12.80177 -12.73760 -12.27957 -12.25267 -12.12408 -11.91984 -11.73210 -11.20777 -11.10516 -10.65235 -10.50499 -9.81655 -8.26604 -6.40917 -0.74379 1.40966 1.42848 1.54042 1.68091 2.37901 2.81843 2.92965 3.06732 3.08877 3.19484 3.53530 3.74283 3.89657 3.92809 4.06890 4.13145 4.21316 4.50011 4.66425 4.72871 4.73480 4.77278 4.79382 4.94480 5.11674 5.25095 5.26084 5.33899 5.59737 5.67562 5.82678 6.05285 6.72717 6.91974 7.29487 8.85764 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.030622 B = 0.004629 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.158905 B = 6047.651748 C = 6473.109204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.976 5.976 3 C 0.108 3.892 4 H 0.122 0.878 5 C 0.037 3.963 6 O -0.386 6.386 7 C 0.020 3.980 8 C 0.059 3.941 9 H 0.090 0.910 10 O -0.553 6.553 11 S 2.611 3.389 12 O -0.992 6.992 13 O -0.994 6.994 14 C -0.588 4.588 15 C 0.021 3.979 16 C -0.539 4.539 17 H 0.076 0.924 18 C -0.003 4.003 19 N -0.935 5.935 20 Si 0.975 3.025 21 H -0.269 1.269 22 H -0.283 1.283 23 H -0.258 1.258 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.113 0.887 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.117 0.883 31 H 0.391 0.609 32 H 0.139 0.861 33 H 0.143 0.857 34 H 0.007 0.993 35 H 0.004 0.996 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.131 19.927 5.758 21.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.813 5.813 3 C 0.001 3.999 4 H 0.139 0.861 5 C -0.042 4.042 6 O -0.305 6.305 7 C -0.057 4.057 8 C -0.003 4.003 9 H 0.108 0.892 10 O -0.362 6.362 11 S 2.709 3.291 12 O -0.982 6.982 13 O -0.984 6.984 14 C -0.720 4.720 15 C -0.018 4.018 16 C -0.578 4.578 17 H 0.094 0.906 18 C -0.202 4.202 19 N -0.574 5.574 20 Si 0.798 3.202 21 H -0.195 1.195 22 H -0.209 1.209 23 H -0.182 1.182 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.131 0.869 27 H 0.104 0.896 28 H 0.115 0.885 29 H 0.106 0.894 30 H 0.135 0.865 31 H 0.242 0.758 32 H 0.158 0.842 33 H 0.161 0.839 34 H 0.025 0.975 35 H 0.022 0.978 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.977 19.041 6.005 21.149 hybrid contribution 0.468 -0.409 -0.642 0.894 sum -6.509 18.632 5.363 20.451 Atomic orbital electron populations 1.21803 0.76956 1.05543 1.01652 1.57013 1.15935 1.18823 1.89556 1.22739 0.97627 0.84054 0.95470 0.86069 1.23655 1.00000 0.85729 0.94783 1.88880 1.63107 1.45471 1.33075 1.24437 0.99846 0.96070 0.85313 1.23697 0.88419 0.93385 0.94777 0.89223 1.86609 1.39167 1.65239 1.45190 1.04824 0.72818 0.73086 0.78352 1.93475 1.45698 1.83514 1.75542 1.93479 1.65429 1.63930 1.75591 1.30402 1.10742 1.07934 1.22936 1.18819 0.94151 0.89824 0.99010 1.21513 1.36876 1.07434 0.91993 0.90585 1.26124 0.94888 0.95956 1.03198 1.70106 1.38371 1.13368 1.35596 0.85299 0.79188 0.77339 0.78350 1.19466 1.20864 1.18190 0.92067 0.92063 0.86890 0.89552 0.88483 0.89403 0.86481 0.75806 0.84234 0.83859 0.97455 0.97760 0.92371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.05 8.57 127.77 1.09 3.14 16 2 N -0.98 -26.44 2.90 -511.33 -1.48 -27.93 16 3 C 0.11 2.39 3.32 45.98 0.15 2.54 16 4 H 0.12 2.65 7.06 -2.39 -0.02 2.64 16 5 C 0.04 0.69 7.13 72.36 0.52 1.21 16 6 O -0.39 -7.54 11.52 -148.98 -1.72 -9.26 16 7 C 0.02 0.27 7.45 72.67 0.54 0.81 16 8 C 0.06 1.01 4.44 31.90 0.14 1.15 16 9 H 0.09 1.39 8.14 -2.39 -0.02 1.38 16 10 O -0.55 -9.76 9.58 -148.98 -1.43 -11.19 16 11 S 2.61 96.24 5.41 -56.49 -0.31 95.93 16 12 O -0.99 -41.03 16.67 -127.65 -2.13 -43.15 16 13 O -0.99 -43.34 16.64 -127.65 -2.12 -45.47 16 14 C -0.59 -22.44 6.11 71.98 0.44 -22.00 16 15 C 0.02 1.10 4.98 29.85 0.15 1.25 16 16 C -0.54 -29.95 9.11 25.60 0.23 -29.72 16 17 H 0.08 3.89 7.74 -2.91 -0.02 3.86 16 18 C 0.00 -0.19 5.46 84.66 0.46 0.28 16 19 N -0.93 -57.07 13.29 21.45 0.28 -56.78 16 20 Si 0.97 43.22 29.54 68.60 2.03 45.24 16 21 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 23 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 24 H 0.06 1.25 8.02 -2.39 -0.02 1.23 16 25 H 0.06 1.68 7.05 -2.39 -0.02 1.67 16 26 H 0.11 2.48 5.57 -2.38 -0.01 2.47 16 27 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 28 H 0.10 1.82 7.11 -2.39 -0.02 1.81 16 29 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.39 3.25 9.12 -74.06 -0.68 2.58 16 32 H 0.14 4.73 8.14 -2.39 -0.02 4.71 16 33 H 0.14 4.67 8.14 -2.39 -0.02 4.65 16 34 H 0.01 0.40 8.14 -2.38 -0.02 0.39 16 35 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 36 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -78.42 308.55 -2.73 -81.15 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: 0.41 Total: 12.79 kcal Atomic # 6 Polarization: -45.07 SS G_CDS: 3.73 Total: -41.34 kcal Atomic # 7 Polarization: -83.51 SS G_CDS: -1.20 Total: -84.71 kcal Atomic # 8 Polarization: -101.67 SS G_CDS: -7.40 Total: -109.07 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: 96.24 SS G_CDS: -0.31 Total: 95.93 kcal Total: -78.42 -2.73 -81.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352344319.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.190 kcal (2) G-P(sol) polarization free energy of solvation -78.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds