Wall clock time and date at job start Tue Mar 31 2020 00:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46505 * 119.99714 * 2 1 4 4 H 1.09000 * 110.45482 * 177.39829 * 3 2 1 5 5 C 1.54479 * 110.50869 * 54.64662 * 3 2 1 6 6 O 1.44427 * 104.79893 * 217.37487 * 5 3 2 7 7 C 1.44423 * 105.27687 * 40.51136 * 6 5 3 8 8 C 1.54473 * 104.80295 * 319.48687 * 7 6 5 9 9 H 1.08997 * 110.63040 * 142.68212 * 8 7 6 10 10 O 1.42903 * 110.51552 * 265.33384 * 8 7 6 11 11 S 1.65601 * 120.00248 * 180.02562 * 2 1 3 12 12 O 1.42096 * 104.27550 * 333.93134 * 11 2 1 13 13 O 1.42097 * 104.27967 * 206.06977 * 11 2 1 14 14 C 1.81399 * 104.44938 * 90.00020 * 11 2 1 15 15 C 1.53002 * 109.47162 * 180.02562 * 14 11 2 16 16 C 1.50706 * 109.46925 * 179.97438 * 15 14 11 17 17 H 1.07999 * 120.00196 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99394 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99350 * 179.97438 * 18 16 15 20 20 Si 1.86794 * 120.00190 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47495 * 90.00133 * 20 18 16 22 22 H 1.48501 * 109.46931 * 209.99806 * 20 18 16 23 23 H 1.48494 * 109.47332 * 329.99323 * 20 18 16 24 24 H 1.09000 * 109.46987 * 269.99813 * 1 2 3 25 25 H 1.08996 * 109.47303 * 29.99868 * 1 2 3 26 26 H 1.08998 * 109.46744 * 149.99839 * 1 2 3 27 27 H 1.09000 * 110.37371 * 336.20090 * 5 3 2 28 28 H 1.08997 * 110.37154 * 98.54564 * 5 3 2 29 29 H 1.09004 * 110.37158 * 200.65600 * 7 6 5 30 30 H 1.08999 * 110.37222 * 78.31872 * 7 6 5 31 31 H 0.96700 * 113.99870 * 294.64484 * 10 8 7 32 32 H 1.09004 * 109.47089 * 300.00001 * 14 11 2 33 33 H 1.09004 * 109.47568 * 60.00012 * 14 11 2 34 34 H 1.09000 * 109.46497 * 299.99702 * 15 14 11 35 35 H 1.08996 * 109.46876 * 60.00092 * 15 14 11 36 36 H 0.97005 * 119.99656 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 1 3.2715 1.0886 0.0464 5 6 1.7430 2.1561 1.1801 6 8 1.7502 3.5013 0.6544 7 6 1.2140 3.3904 -0.6821 8 6 1.8415 2.0995 -1.2532 9 1 1.1224 1.5651 -1.8740 10 8 3.0192 2.4043 -2.0030 11 16 2.2931 -1.4341 -0.0006 12 8 1.3970 -2.3564 0.6041 13 8 3.5395 -1.1194 0.6047 14 6 2.5194 -1.8253 -1.7574 15 6 3.2810 -3.1455 -1.8920 16 6 3.4684 -3.4708 -3.3515 17 1 3.0826 -2.8029 -4.1075 18 6 4.1326 -4.6210 -3.7216 19 7 4.2957 -4.9051 -4.9953 20 14 4.7992 -5.7764 -2.4140 21 1 3.7634 -6.7826 -2.0677 22 1 6.0067 -6.4676 -2.9332 23 1 5.1578 -4.9976 -1.2015 24 1 -0.3633 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5139 27 1 0.7382 1.8786 1.4985 28 1 2.4428 2.0698 2.0112 29 1 1.5076 4.2523 -1.2814 30 1 0.1281 3.3021 -0.6492 31 1 2.8537 2.9248 -2.8009 32 1 1.5451 -1.9177 -2.2375 33 1 3.0867 -1.0277 -2.2372 34 1 4.2552 -3.0534 -1.4118 35 1 2.7133 -3.9428 -1.4124 36 1 4.7626 -5.7145 -5.2557 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352344321.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:53 Heat of formation + Delta-G solvation = -157.381424 kcal Electronic energy + Delta-G solvation = -20975.899068 eV Core-core repulsion = 17587.922440 eV Total energy + Delta-G solvation = -3387.976629 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.102 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.18957 -36.85965 -36.27041 -35.96836 -35.56573 -33.96915 -31.50272 -30.01885 -28.89333 -26.48786 -25.89727 -23.16163 -21.54303 -20.84327 -18.99417 -18.11540 -17.26885 -17.01497 -16.95697 -16.27749 -15.72280 -15.54541 -15.21779 -14.42174 -14.31869 -13.90997 -13.60562 -13.38471 -13.16448 -12.84872 -12.69647 -12.56438 -12.29231 -11.92821 -11.80486 -11.69905 -11.39295 -11.27218 -11.23224 -11.12080 -10.49700 -10.46719 -10.19485 -10.01042 -9.75068 -9.45623 -9.00450 -8.67691 -6.18065 -4.19368 0.52366 2.68548 3.25464 3.33016 3.37269 3.62900 3.82888 4.08850 4.24188 4.34660 4.41718 4.45380 4.59056 4.73450 4.87970 5.08726 5.13650 5.21704 5.28489 5.35492 5.39588 5.48286 5.51038 5.55692 5.63055 5.88159 6.24271 6.25644 6.51296 6.79080 6.91569 7.38400 7.52861 8.34923 8.82813 9.41581 10.94351 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.027181 B = 0.005169 C = 0.004736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.881756 B = 5415.746041 C = 5911.063390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.999 5.999 3 C 0.121 3.879 4 H 0.131 0.869 5 C 0.041 3.959 6 O -0.366 6.366 7 C 0.016 3.984 8 C 0.054 3.946 9 H 0.083 0.917 10 O -0.551 6.551 11 S 2.586 3.414 12 O -0.959 6.959 13 O -0.959 6.959 14 C -0.580 4.580 15 C -0.007 4.007 16 C -0.519 4.519 17 H 0.078 0.922 18 C 0.072 3.928 19 N -0.896 5.896 20 Si 0.869 3.131 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.262 1.262 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.382 0.618 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.033 0.967 35 H 0.028 0.972 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.099 15.725 8.202 19.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.835 5.835 3 C 0.013 3.987 4 H 0.149 0.851 5 C -0.037 4.037 6 O -0.284 6.284 7 C -0.061 4.061 8 C -0.008 4.008 9 H 0.101 0.899 10 O -0.356 6.356 11 S 2.684 3.316 12 O -0.949 6.949 13 O -0.950 6.950 14 C -0.713 4.713 15 C -0.046 4.046 16 C -0.558 4.558 17 H 0.096 0.904 18 C -0.131 4.131 19 N -0.533 5.533 20 Si 0.695 3.305 21 H -0.197 1.197 22 H -0.207 1.207 23 H -0.186 1.186 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.097 0.903 27 H 0.090 0.910 28 H 0.123 0.877 29 H 0.116 0.884 30 H 0.086 0.914 31 H 0.230 0.770 32 H 0.142 0.858 33 H 0.146 0.854 34 H 0.051 0.949 35 H 0.046 0.954 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.433 15.004 9.488 19.653 hybrid contribution -0.197 -0.335 -0.805 0.894 sum -8.629 14.669 8.683 19.106 Atomic orbital electron populations 1.21482 0.78633 1.03101 1.02465 1.57766 1.14993 1.20637 1.90096 1.22134 0.99412 0.84015 0.93123 0.85128 1.23765 1.02226 0.81293 0.96460 1.89180 1.84717 1.26414 1.28040 1.24161 0.98055 0.98800 0.85114 1.23611 0.88186 0.95158 0.93809 0.89886 1.86593 1.31476 1.76472 1.41075 1.05926 0.73696 0.72525 0.79404 1.93554 1.64762 1.61532 1.75099 1.93549 1.43682 1.82607 1.75113 1.30314 1.10456 1.09810 1.20749 1.19417 0.95086 0.89022 1.01082 1.20832 1.37604 1.08126 0.89233 0.90426 1.24979 0.95206 0.97506 0.95367 1.69881 1.42065 1.26089 1.15308 0.86927 0.79317 0.81614 0.82620 1.19658 1.20698 1.18620 0.92104 0.91375 0.90286 0.91035 0.87735 0.88370 0.91409 0.76961 0.85756 0.85352 0.94900 0.95420 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.83 8.75 59.85 0.52 1.35 16 2 N -1.00 -12.47 3.05 -112.93 -0.34 -12.81 16 3 C 0.12 1.46 3.29 -66.36 -0.22 1.24 16 4 H 0.13 1.85 6.77 -51.93 -0.35 1.50 16 5 C 0.04 0.44 7.24 37.93 0.27 0.71 16 6 O -0.37 -4.15 11.65 -35.23 -0.41 -4.56 16 7 C 0.02 0.14 7.38 37.93 0.28 0.42 16 8 C 0.05 0.53 3.67 -25.17 -0.09 0.44 16 9 H 0.08 0.70 7.12 -51.93 -0.37 0.33 16 10 O -0.55 -6.00 13.30 -35.23 -0.47 -6.46 16 11 S 2.59 43.73 5.37 -107.50 -0.58 43.15 16 12 O -0.96 -18.22 17.09 -57.54 -0.98 -19.20 16 13 O -0.96 -18.81 16.58 -57.54 -0.95 -19.76 16 14 C -0.58 -10.60 6.12 37.16 0.23 -10.37 16 15 C -0.01 -0.16 4.05 -27.88 -0.11 -0.27 16 16 C -0.52 -14.47 9.66 -34.44 -0.33 -14.80 16 17 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 18 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 19 N -0.90 -27.01 13.96 55.43 0.77 -26.23 16 20 Si 0.87 21.47 27.47 -169.99 -4.67 16.80 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 24 H 0.06 0.53 7.89 -51.93 -0.41 0.12 16 25 H 0.07 0.45 6.96 -51.93 -0.36 0.09 16 26 H 0.08 0.73 7.79 -51.93 -0.40 0.32 16 27 H 0.07 0.65 6.79 -51.93 -0.35 0.29 16 28 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.10 0.67 8.09 -51.93 -0.42 0.25 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.38 2.33 9.12 45.56 0.42 2.75 16 32 H 0.12 2.02 8.14 -51.92 -0.42 1.59 16 33 H 0.13 2.22 8.14 -51.92 -0.42 1.80 16 34 H 0.03 0.78 7.20 -51.93 -0.37 0.41 16 35 H 0.03 0.64 7.57 -51.93 -0.39 0.25 16 36 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 309.00 15.07 4.66 4.66 Total: -1.00 -35.95 309.00 -6.82 -42.77 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -4.30 Total: 0.95 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: 0.45 Total: -19.30 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.43 Total: -39.04 kcal Atomic # 8 Polarization: -47.17 SS G_CDS: -2.82 Total: -49.99 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Atomic # 16 Polarization: 43.73 SS G_CDS: -0.58 Total: 43.15 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -35.95 -6.82 -42.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352344321.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.610 kcal (2) G-P(sol) polarization free energy of solvation -35.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds