Wall clock time and date at job start Tue Mar 31 2020 00:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.38349 * 127.15068 * 2 1 4 4 C 1.39776 * 126.56574 * 0.02562 * 3 2 1 5 5 H 1.07999 * 119.99778 * 5.78312 * 4 3 2 6 6 C 1.40085 * 120.00068 * 185.77562 * 4 3 2 7 7 N 1.30808 * 119.99942 * 184.12744 * 6 4 3 8 8 Si 1.86799 * 119.99669 * 4.13543 * 6 4 3 9 9 H 1.48509 * 109.46950 * 179.97438 * 8 6 4 10 10 H 1.48495 * 109.47355 * 299.99259 * 8 6 4 11 11 H 1.48501 * 109.47215 * 59.99928 * 8 6 4 12 12 N 1.33098 * 106.87112 * 179.74281 * 3 2 1 13 13 N 1.28516 * 109.74302 * 0.24028 * 12 3 2 14 14 C 1.32388 * 110.20609 * 0.02562 * 13 12 3 15 15 S 1.76202 * 126.26021 * 180.02562 * 14 13 12 16 16 C 1.81001 * 99.99784 * 359.97438 * 15 14 13 17 17 C 1.53001 * 109.47218 * 179.97438 * 16 15 14 18 18 N 1.46497 * 109.47342 * 179.97438 * 17 16 15 19 19 C 1.34954 * 126.03720 * 125.00113 * 18 17 16 20 20 C 1.35314 * 107.74533 * 179.97438 * 19 18 17 21 21 C 1.39874 * 107.92073 * 359.97438 * 20 19 18 22 22 N 1.30834 * 108.20281 * 359.74118 * 21 20 19 23 23 H 1.08991 * 109.47295 * 89.99934 * 1 2 3 24 24 H 1.08996 * 109.46934 * 210.00007 * 1 2 3 25 25 H 1.09000 * 109.46691 * 329.99366 * 1 2 3 26 26 H 0.97000 * 120.00392 * 354.84969 * 7 6 4 27 27 H 1.09003 * 109.47327 * 299.99328 * 16 15 14 28 28 H 1.08993 * 109.47535 * 59.99722 * 16 15 14 29 29 H 1.09007 * 109.46999 * 300.00013 * 17 16 15 30 30 H 1.09006 * 109.47297 * 59.99693 * 17 16 15 31 31 H 1.07992 * 126.12307 * 359.97438 * 19 18 17 32 32 H 1.08001 * 126.03747 * 179.97438 * 20 19 18 33 33 H 1.07993 * 125.89610 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3006 1.1027 0.0000 4 6 1.9086 2.4444 0.0005 5 1 0.8640 2.7018 0.0952 6 6 2.8708 3.4552 -0.1217 7 7 2.5140 4.7111 -0.0402 8 14 4.6632 3.0096 -0.4011 9 1 5.4729 4.2509 -0.4958 10 1 5.1511 2.1853 0.7337 11 1 4.7906 2.2385 -1.6638 12 7 3.5490 0.6414 0.0057 13 7 3.5370 -0.6437 0.0041 14 6 2.2904 -1.0893 -0.0033 15 16 1.7873 -2.7780 -0.0075 16 6 3.4059 -3.5881 0.0002 17 6 3.2164 -5.1063 -0.0015 18 7 4.5264 -5.7620 0.0040 19 6 4.9521 -6.6777 0.8994 20 6 6.2114 -7.0351 0.5567 21 6 6.5673 -6.3137 -0.5876 22 7 5.5558 -5.5546 -0.9231 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 1.5753 4.9451 0.0298 27 1 3.9654 -3.2905 -0.8867 28 1 3.9562 -3.2921 0.8932 29 1 2.6570 -5.4037 0.8856 30 1 2.6659 -5.4028 -0.8945 31 1 4.3887 -7.0571 1.7389 32 1 6.8320 -7.7510 1.0751 33 1 7.5122 -6.3756 -1.1067 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357083639.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:54 Heat of formation + Delta-G solvation = 114.868712 kcal Electronic energy + Delta-G solvation = -18401.124531 eV Core-core repulsion = 15396.847976 eV Total energy + Delta-G solvation = -3004.276555 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.085 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.89616 -41.99025 -35.99020 -35.63832 -35.32899 -32.07519 -31.35298 -30.27347 -28.46667 -27.32900 -25.02297 -23.39024 -22.21288 -21.96098 -21.42593 -20.23821 -18.37146 -18.30536 -17.08226 -16.98602 -16.48168 -15.95299 -15.70215 -15.50426 -15.22254 -14.83651 -14.60246 -14.23546 -14.12792 -13.66999 -13.56513 -13.38193 -13.14996 -12.93918 -12.67726 -12.04282 -11.84472 -11.58699 -11.52658 -11.44119 -10.95968 -10.61470 -10.41942 -10.41504 -9.53010 -9.50921 -8.76090 -6.90755 0.10516 0.91128 0.93605 1.06039 1.50215 1.55266 1.75949 1.89796 1.99661 2.08077 2.17927 2.38147 3.00533 3.41393 3.66694 3.91382 3.99886 4.11239 4.20455 4.32901 4.43014 4.44490 4.54575 4.64371 4.68613 4.84890 4.92650 5.18091 5.18227 5.33921 5.64898 5.75743 5.97142 6.15433 6.35059 6.52996 6.79741 7.89180 8.10646 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.025687 B = 0.004193 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.794364 B = 6676.762160 C = 7628.167909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.514 5.514 3 C 0.326 3.674 4 C -0.507 4.507 5 H 0.087 0.913 6 C 0.045 3.955 7 N -0.821 5.821 8 Si 1.143 2.857 9 H -0.295 1.295 10 H -0.280 1.280 11 H -0.298 1.298 12 N -0.450 5.450 13 N -0.314 5.314 14 C 0.075 3.925 15 S 0.046 5.954 16 C -0.109 4.109 17 C 0.157 3.843 18 N -0.382 5.382 19 C 0.058 3.942 20 C -0.286 4.286 21 C 0.033 3.967 22 N -0.346 5.346 23 H 0.079 0.921 24 H 0.103 0.897 25 H 0.083 0.917 26 H 0.288 0.712 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.143 0.857 30 H 0.105 0.895 31 H 0.214 0.786 32 H 0.171 0.829 33 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.002 -22.007 2.587 22.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.214 5.214 3 C 0.079 3.921 4 C -0.549 4.549 5 H 0.105 0.895 6 C -0.176 4.176 7 N -0.446 5.446 8 Si 0.973 3.027 9 H -0.224 1.224 10 H -0.207 1.207 11 H -0.226 1.226 12 N -0.299 5.299 13 N -0.156 5.156 14 C -0.300 4.300 15 S 0.271 5.729 16 C -0.260 4.260 17 C 0.034 3.966 18 N -0.165 5.165 19 C -0.088 4.088 20 C -0.315 4.315 21 C -0.152 4.152 22 N -0.168 5.168 23 H 0.098 0.902 24 H 0.122 0.878 25 H 0.102 0.898 26 H 0.099 0.901 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.161 0.839 30 H 0.123 0.877 31 H 0.230 0.770 32 H 0.189 0.811 33 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -1.756 -20.876 1.640 21.014 hybrid contribution -1.444 0.093 0.600 1.566 sum -3.199 -20.783 2.241 21.147 Atomic orbital electron populations 1.21955 0.74363 1.04869 1.03892 1.46199 1.08487 1.03943 1.62784 1.21820 0.85655 0.90021 0.94627 1.19422 0.97576 0.87475 1.50391 0.89477 1.27661 1.09470 0.91562 0.88917 1.70658 1.21996 1.18367 1.33547 0.82224 0.69992 0.71817 0.78695 1.22356 1.20699 1.22552 1.73876 1.17295 1.02192 1.36559 1.74231 1.17436 1.04986 1.18936 1.26556 0.90286 0.96210 1.16972 1.83956 1.08599 0.85803 1.94551 1.23598 0.97868 0.98184 1.06322 1.21484 0.80357 0.87521 1.07237 1.48804 1.13079 1.33060 1.21562 1.23324 0.96951 0.92393 0.96105 1.21914 0.97732 1.09765 1.02088 1.24429 0.98540 0.94723 0.97539 1.77388 0.98247 1.25462 1.15686 0.90239 0.87845 0.89813 0.90086 0.90532 0.90208 0.83880 0.87704 0.76954 0.81125 0.78337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.92 10.89 127.77 1.39 4.31 16 2 N -0.51 -23.10 3.26 -543.63 -1.77 -24.88 16 3 C 0.33 17.61 7.27 133.23 0.97 18.58 16 4 C -0.51 -27.62 9.50 23.09 0.22 -27.40 16 5 H 0.09 4.54 7.46 -2.91 -0.02 4.52 16 6 C 0.04 2.45 5.52 85.29 0.47 2.93 16 7 N -0.82 -44.43 13.65 21.86 0.30 -44.14 16 8 Si 1.14 59.53 25.90 68.60 1.78 61.31 16 9 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 10 H -0.28 -15.33 6.76 99.48 0.67 -14.66 16 11 H -0.30 -16.16 7.11 99.48 0.71 -15.46 16 12 N -0.45 -25.95 7.52 -55.02 -0.41 -26.36 16 13 N -0.31 -16.55 11.62 -56.17 -0.65 -17.21 16 14 C 0.07 3.30 8.09 179.18 1.45 4.75 16 15 S 0.05 1.32 21.79 -56.49 -1.23 0.09 16 16 C -0.11 -3.08 5.41 71.98 0.39 -2.69 16 17 C 0.16 2.91 6.51 86.38 0.56 3.47 16 18 N -0.38 -8.55 3.68 -348.05 -1.28 -9.83 16 19 C 0.06 0.95 11.45 83.54 0.96 1.90 16 20 C -0.29 -4.98 10.80 21.99 0.24 -4.75 16 21 C 0.03 0.74 12.03 85.24 1.03 1.77 16 22 N -0.35 -9.81 12.42 -57.03 -0.71 -10.52 16 23 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 24 H 0.10 2.61 7.85 -2.39 -0.02 2.59 16 25 H 0.08 2.64 7.48 -2.39 -0.02 2.62 16 26 H 0.29 14.74 8.72 -92.71 -0.81 13.93 16 27 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 28 H 0.08 2.54 8.14 -2.40 -0.02 2.52 16 29 H 0.14 1.52 8.07 -2.38 -0.02 1.50 16 30 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 31 H 0.21 1.51 8.06 -2.91 -0.02 1.49 16 32 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 33 H 0.20 3.26 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -76.11 304.60 4.74 -71.37 By element: Atomic # 1 Polarization: -3.76 SS G_CDS: 1.05 Total: -2.71 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: 7.67 Total: 2.87 kcal Atomic # 7 Polarization: -128.40 SS G_CDS: -4.53 Total: -132.93 kcal Atomic # 14 Polarization: 59.53 SS G_CDS: 1.78 Total: 61.31 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -1.23 Total: 0.09 kcal Total: -76.11 4.74 -71.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357083639.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.242 kcal (2) G-P(sol) polarization free energy of solvation -76.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds