Wall clock time and date at job start Tue Mar 31 2020 01:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99808 * 2 1 4 4 H 1.48495 * 109.47032 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47225 * 299.99229 * 3 2 1 6 6 H 1.48501 * 109.47349 * 59.99392 * 3 2 1 7 7 C 1.37872 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00304 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00035 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47003 * 179.97438 * 9 7 2 11 11 N 1.46906 * 109.46934 * 179.97438 * 10 9 7 12 12 C 1.38881 * 110.99768 * 185.22377 * 11 10 9 13 13 C 1.40386 * 120.17598 * 264.04998 * 12 11 10 14 14 C 1.47431 * 120.20772 * 0.03103 * 13 12 11 15 15 N 1.34775 * 120.00121 * 180.21967 * 14 13 12 16 16 O 1.21605 * 120.00069 * 0.22215 * 14 13 12 17 17 C 1.39689 * 119.58167 * 180.25185 * 13 12 11 18 18 C 1.37794 * 119.92965 * 359.75432 * 17 13 12 19 19 C 1.38573 * 120.35081 * 0.02562 * 18 17 13 20 20 C 1.38000 * 120.41808 * 359.97438 * 19 18 17 21 21 N 1.48025 * 119.96361 * 180.02562 * 20 19 18 22 22 O 1.21799 * 119.99741 * 354.53883 * 21 20 19 23 23 O 1.21792 * 119.99846 * 174.26631 * 21 20 19 24 24 H 0.96999 * 119.99571 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47326 * 59.99122 * 9 7 2 26 26 H 1.09006 * 109.46584 * 299.99351 * 9 7 2 27 27 H 1.08996 * 109.47652 * 59.99498 * 10 9 7 28 28 H 1.09006 * 109.47064 * 299.99233 * 10 9 7 29 29 H 1.00891 * 110.99964 * 309.17796 * 11 10 9 30 30 H 0.97005 * 119.99576 * 0.02562 * 15 14 13 31 31 H 0.96998 * 120.00237 * 179.97438 * 15 14 13 32 32 H 1.08004 * 120.03397 * 179.78137 * 17 13 12 33 33 H 1.07998 * 119.82361 * 179.97438 * 18 17 13 34 34 H 1.07990 * 119.78405 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5108 -4.9343 0.0012 12 6 2.3802 -6.0108 0.1192 13 6 2.8192 -6.6924 -1.0269 14 6 2.3606 -6.2693 -2.3627 15 7 2.7811 -6.9294 -3.4599 16 8 1.6030 -5.3247 -2.4745 17 6 3.6895 -7.7768 -0.8934 18 6 4.1148 -8.1670 0.3578 19 6 3.6834 -7.4893 1.4869 20 6 2.8236 -6.4160 1.3717 21 7 2.3696 -5.6990 2.5845 22 8 2.6737 -6.1156 3.6879 23 8 1.6961 -4.6898 2.4789 24 1 -0.4849 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8904 27 1 2.8721 -3.6043 0.8904 28 1 2.8719 -3.6043 -0.8896 29 1 0.8150 -4.9497 0.7315 30 1 3.3852 -7.6831 -3.3707 31 1 2.4791 -6.6513 -4.3387 32 1 4.0289 -8.3086 -1.7700 33 1 4.7874 -9.0059 0.4591 34 1 4.0228 -7.8026 2.4630 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420612116.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:25 Heat of formation + Delta-G solvation = -26.100178 kcal Electronic energy + Delta-G solvation = -21799.177258 eV Core-core repulsion = 18313.742211 eV Total energy + Delta-G solvation = -3485.435047 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.46267 -41.42000 -39.41399 -38.22214 -37.09098 -35.22489 -34.71708 -32.84671 -32.38925 -30.00590 -27.56888 -26.42160 -25.03735 -23.36744 -22.79094 -21.82476 -20.19647 -19.74964 -18.83380 -18.69389 -18.45866 -17.87816 -17.46921 -16.72453 -16.51693 -16.00944 -15.60844 -15.47067 -15.27398 -15.06923 -14.29565 -13.80566 -13.48311 -13.44852 -13.28105 -12.95698 -12.76374 -12.54812 -12.42882 -12.33112 -12.04288 -11.56956 -11.36459 -11.10776 -10.76305 -10.60633 -10.57835 -10.34227 -9.55032 -8.21901 -6.34669 -1.33666 -0.49942 0.15184 0.29878 1.35997 1.39089 1.51785 1.69468 2.37473 2.41568 2.48342 2.85823 3.10751 3.32184 3.53218 3.72610 3.83783 3.95755 4.28200 4.34599 4.41864 4.65104 4.79055 4.89545 4.91688 5.08050 5.28859 5.42702 5.56444 5.72194 5.91096 5.94718 6.12350 6.20865 6.37679 6.53911 6.79867 7.33490 7.43920 8.91384 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016690 B = 0.005699 C = 0.004598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.265354 B = 4911.970988 C = 6088.348344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.000 4.000 3 Si 0.974 3.026 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.544 4.544 8 H 0.057 0.943 9 C 0.042 3.958 10 C 0.126 3.874 11 N -0.642 5.642 12 C 0.201 3.799 13 C -0.153 4.153 14 C 0.548 3.452 15 N -0.828 5.828 16 O -0.547 6.547 17 C 0.001 3.999 18 C -0.112 4.112 19 C -0.015 4.015 20 C -0.123 4.123 21 N 0.032 4.968 22 O -0.126 6.126 23 O -0.241 6.241 24 H 0.265 0.735 25 H -0.010 1.010 26 H -0.007 1.007 27 H 0.015 0.985 28 H 0.050 0.950 29 H 0.353 0.647 30 H 0.418 0.582 31 H 0.412 0.588 32 H 0.202 0.798 33 H 0.212 0.788 34 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.708 -25.211 -3.778 28.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.797 3.203 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.583 4.583 8 H 0.075 0.925 9 C 0.005 3.995 10 C 0.001 3.999 11 N -0.273 5.273 12 C 0.100 3.900 13 C -0.158 4.158 14 C 0.332 3.668 15 N -0.396 5.396 16 O -0.423 6.423 17 C -0.018 4.018 18 C -0.130 4.130 19 C -0.035 4.035 20 C -0.210 4.210 21 N 0.544 4.456 22 O -0.355 6.355 23 O -0.433 6.433 24 H 0.074 0.926 25 H 0.009 0.991 26 H 0.012 0.988 27 H 0.033 0.967 28 H 0.069 0.931 29 H 0.179 0.821 30 H 0.251 0.749 31 H 0.245 0.755 32 H 0.219 0.781 33 H 0.229 0.771 34 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 13.105 -24.649 -4.998 28.360 hybrid contribution -0.287 1.385 1.179 1.841 sum 12.818 -23.264 -3.819 26.835 Atomic orbital electron populations 1.70146 1.07963 1.27844 1.51129 1.26042 0.95862 1.03564 0.94332 0.85280 0.78820 0.78102 0.78072 1.18609 1.19849 1.19947 1.21504 0.93226 0.92077 1.51453 0.92509 1.18799 0.94041 0.91893 0.94800 1.21482 0.95337 0.85862 0.97209 1.57718 1.14427 1.01620 1.53573 1.19128 0.88982 0.91611 0.90325 1.20073 1.04188 0.99852 0.91737 1.18105 0.80794 0.82600 0.85298 1.43454 1.51926 1.36211 1.08009 1.91043 1.35689 1.28782 1.86801 1.22334 0.88235 0.89899 1.01336 1.21755 1.01008 1.01500 0.88784 1.21707 0.89097 0.88342 1.04347 1.22219 1.10599 1.04026 0.84172 1.43957 0.98551 1.00033 1.03078 1.94400 1.57949 1.69229 1.13923 1.94675 1.39565 1.15521 1.93536 0.92612 0.99125 0.98841 0.96685 0.93149 0.82094 0.74922 0.75529 0.78068 0.77146 0.80357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -61.49 13.29 21.45 0.28 -61.21 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 3 Si 0.97 47.68 29.54 68.60 2.03 49.71 16 4 H -0.26 -12.21 7.11 99.48 0.71 -11.51 16 5 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.27 -12.93 7.11 99.48 0.71 -12.23 16 7 C -0.54 -34.62 9.11 25.60 0.23 -34.39 16 8 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 9 C 0.04 2.61 5.18 29.85 0.15 2.76 16 10 C 0.13 6.43 4.39 86.30 0.38 6.81 16 11 N -0.64 -28.43 4.28 -337.94 -1.45 -29.87 16 12 C 0.20 6.68 5.26 38.71 0.20 6.89 16 13 C -0.15 -3.60 5.89 -19.98 -0.12 -3.72 16 14 C 0.55 14.98 8.03 86.67 0.70 15.68 16 15 N -0.83 -11.22 8.82 -175.88 -1.55 -12.77 16 16 O -0.55 -23.03 15.43 -4.05 -0.06 -23.10 16 17 C 0.00 0.01 9.53 22.52 0.21 0.22 16 18 C -0.11 -0.73 10.02 22.24 0.22 -0.50 16 19 C -0.02 -0.24 9.54 22.29 0.21 -0.03 16 20 C -0.12 -3.55 6.75 36.48 0.25 -3.31 16 21 N 0.03 1.18 4.45 -46.21 -0.21 0.98 16 22 O -0.13 -4.20 18.45 18.89 0.35 -3.85 16 23 O -0.24 -10.99 14.02 18.90 0.26 -10.73 16 24 H 0.27 16.21 8.31 -92.71 -0.77 15.44 16 25 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 26 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 27 H 0.01 0.77 6.78 -2.39 -0.02 0.76 16 28 H 0.05 2.59 7.97 -2.38 -0.02 2.58 16 29 H 0.35 16.54 6.35 -89.70 -0.57 15.97 16 30 H 0.42 1.24 6.86 -92.70 -0.64 0.60 16 31 H 0.41 5.28 8.93 -92.71 -0.83 4.45 16 32 H 0.20 -0.56 6.40 -2.91 -0.02 -0.58 16 33 H 0.21 -0.92 8.06 -2.91 -0.02 -0.95 16 34 H 0.18 1.96 7.60 -2.92 -0.02 1.94 16 Total: -1.00 -95.05 300.06 1.72 -93.33 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -0.84 Total: 6.65 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: 2.91 Total: -9.14 kcal Atomic # 7 Polarization: -99.95 SS G_CDS: -2.92 Total: -102.87 kcal Atomic # 8 Polarization: -38.22 SS G_CDS: 0.55 Total: -37.67 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 2.03 Total: 49.71 kcal Total: -95.05 1.72 -93.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420612116.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.226 kcal (2) G-P(sol) polarization free energy of solvation -95.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds