Wall clock time and date at job start Tue Mar 31 2020 01:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38105 * 119.50294 * 2 1 4 4 C 1.38708 * 119.35396 * 180.02562 * 3 2 1 5 5 C 1.39032 * 118.41952 * 359.97438 * 4 3 2 6 6 N 1.39881 * 120.51282 * 179.97438 * 5 4 3 7 7 C 1.34778 * 119.99794 * 325.84736 * 6 5 4 8 8 O 1.21384 * 120.00029 * 4.23474 * 7 6 5 9 9 C 1.49339 * 119.99619 * 184.23578 * 7 6 5 10 10 O 1.21357 * 120.00175 * 0.02562 * 9 7 6 11 11 N 1.34778 * 119.99619 * 179.97438 * 9 7 6 12 12 C 1.46504 * 119.99741 * 180.02562 * 11 9 7 13 13 C 1.50696 * 109.46986 * 179.97438 * 12 11 9 14 14 H 1.08005 * 120.00165 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00009 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99744 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00135 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.46960 * 60.00413 * 17 15 13 19 19 H 1.48499 * 109.47291 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47210 * 300.00402 * 17 15 13 21 21 C 1.39567 * 118.97333 * 0.25983 * 5 4 3 22 22 O 1.35736 * 119.72890 * 179.74554 * 21 5 4 23 23 N 1.31994 * 119.50470 * 180.02562 * 2 1 3 24 24 H 1.09001 * 109.46891 * 89.99932 * 1 2 3 25 25 H 1.08998 * 109.46966 * 209.99526 * 1 2 3 26 26 H 1.08999 * 109.46901 * 329.99826 * 1 2 3 27 27 H 1.07993 * 120.31861 * 359.97438 * 3 2 1 28 28 H 1.07997 * 120.78467 * 179.97438 * 4 3 2 29 29 H 0.97001 * 119.99665 * 145.57148 * 6 5 4 30 30 H 0.96995 * 120.00365 * 359.97438 * 11 9 7 31 31 H 1.09005 * 109.46981 * 299.99550 * 12 11 9 32 32 H 1.09000 * 109.47156 * 60.00045 * 12 11 9 33 33 H 0.97000 * 119.99744 * 179.97438 * 16 15 13 34 34 H 0.96695 * 113.99915 * 89.99463 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1872 1.2020 0.0000 4 6 3.5742 1.1984 -0.0005 5 6 4.2327 -0.0261 -0.0005 6 7 5.6305 -0.0809 -0.0016 7 6 6.3411 0.8577 -0.6578 8 8 5.7724 1.7927 -1.1829 9 6 7.8282 0.7472 -0.7390 10 8 8.3967 -0.1879 -0.2144 11 7 8.5387 1.6855 -1.3957 12 6 9.9976 1.5768 -1.4758 13 6 10.5458 2.7421 -2.2583 14 1 9.8748 3.4893 -2.6558 15 6 11.9042 2.8551 -2.4658 16 7 12.7213 1.9456 -1.9813 17 14 12.5839 4.2992 -3.4364 18 1 12.2180 5.5682 -2.7572 19 1 14.0625 4.1892 -3.5175 20 1 12.0112 4.2882 -4.8065 21 6 3.4776 -1.1998 -0.0055 22 8 4.1047 -2.4037 -0.0108 23 7 2.1571 -1.1488 -0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6443 2.1355 -0.0004 28 1 4.1294 2.1247 -0.0010 29 1 6.0883 -0.7920 0.4733 30 1 8.0843 2.4322 -1.8159 31 1 10.4182 1.5838 -0.4702 32 1 10.2657 0.6458 -1.9753 33 1 13.6769 2.0249 -2.1277 34 1 4.2866 -2.7562 0.8710 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427893956.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:52 Heat of formation + Delta-G solvation = -74.446231 kcal Electronic energy + Delta-G solvation = -20604.180969 eV Core-core repulsion = 17116.649480 eV Total energy + Delta-G solvation = -3487.531489 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.33797 -39.99389 -38.14610 -37.48547 -35.57440 -34.34852 -32.43455 -32.04552 -31.70732 -28.06347 -27.26987 -24.62218 -23.74058 -22.81145 -21.69034 -20.07141 -19.14532 -18.71181 -17.53818 -16.91399 -16.33179 -16.11709 -15.75067 -15.40203 -15.07179 -14.71426 -14.31829 -14.20638 -13.80892 -13.58371 -13.18651 -12.95068 -12.51879 -12.37731 -12.09390 -11.97212 -11.93331 -11.40821 -11.07018 -11.01185 -10.93182 -10.37774 -9.97127 -9.70271 -9.53846 -9.14258 -8.87128 -8.42177 -8.16762 -6.25430 -4.33226 0.59911 0.94127 1.70839 2.47155 3.18251 3.22667 3.27391 3.29325 3.41651 3.57967 3.91451 4.28284 4.32267 4.54205 4.70836 4.88211 5.03002 5.11303 5.16432 5.31012 5.31902 5.57004 5.69879 5.87790 5.98536 6.34200 6.84331 7.02082 7.09902 7.19818 7.31378 7.49177 7.64664 7.72344 7.82621 8.30359 8.49212 8.77389 9.33189 10.84578 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.038883 B = 0.003158 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.939706 B = 8865.314970 C = 9455.630484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.129 3.871 3 C -0.160 4.160 4 C -0.063 4.063 5 C 0.080 3.920 6 N -0.639 5.639 7 C 0.511 3.489 8 O -0.506 6.506 9 C 0.493 3.507 10 O -0.533 6.533 11 N -0.669 5.669 12 C 0.247 3.753 13 C -0.549 4.549 14 H 0.066 0.934 15 C 0.066 3.934 16 N -0.885 5.885 17 Si 0.907 3.093 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.296 3.704 22 O -0.473 6.473 23 N -0.485 5.485 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.143 0.857 28 H 0.158 0.842 29 H 0.425 0.575 30 H 0.405 0.595 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.268 0.732 34 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.146 -2.775 6.535 22.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.009 4.009 3 C -0.181 4.181 4 C -0.090 4.090 5 C -0.019 4.019 6 N -0.286 5.286 7 C 0.294 3.706 8 O -0.380 6.380 9 C 0.271 3.729 10 O -0.412 6.412 11 N -0.318 5.318 12 C 0.127 3.873 13 C -0.587 4.587 14 H 0.084 0.916 15 C -0.138 4.138 16 N -0.522 5.522 17 Si 0.734 3.266 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.199 1.199 21 C 0.114 3.886 22 O -0.279 6.279 23 N -0.205 5.205 24 H 0.097 0.903 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.161 0.839 28 H 0.176 0.824 29 H 0.264 0.736 30 H 0.239 0.761 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -21.247 -3.558 5.898 22.335 hybrid contribution 1.068 1.292 -0.051 1.677 sum -20.178 -2.266 5.847 21.130 Atomic orbital electron populations 1.20713 0.88318 1.03550 1.03299 1.21020 0.96904 0.87156 0.95795 1.21922 0.94017 0.99480 1.02650 1.21784 0.94331 0.97834 0.95073 1.18852 0.83819 0.94321 1.04909 1.42996 1.03499 1.30655 1.51485 1.21007 0.89782 0.81972 0.77815 1.90715 1.71874 1.31144 1.44236 1.19570 0.86193 0.84822 0.82328 1.90745 1.71046 1.32480 1.46905 1.46432 1.10922 1.24321 1.50111 1.19367 0.71366 0.98350 0.98239 1.21157 0.92667 1.08878 1.35966 0.91581 1.24939 0.96574 0.96743 0.95582 1.69953 1.03953 1.34115 1.44177 0.86412 0.77834 0.82024 0.80322 1.19940 1.20997 1.19937 1.18963 0.86725 0.84139 0.98816 1.84905 1.76518 1.32757 1.33761 1.66983 1.08419 1.30611 1.14460 0.90266 0.90431 0.90413 0.83881 0.82432 0.73624 0.76055 0.94622 0.94633 0.92215 0.74495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.67 10.16 36.01 0.37 -0.30 16 2 C 0.13 1.31 6.78 -82.57 -0.56 0.76 16 3 C -0.16 -1.55 9.72 -39.46 -0.38 -1.94 16 4 C -0.06 -0.75 8.81 -39.11 -0.34 -1.10 16 5 C 0.08 1.03 6.35 -83.40 -0.53 0.50 16 6 N -0.64 -8.68 5.18 -10.08 -0.05 -8.74 16 7 C 0.51 8.41 7.74 -11.64 -0.09 8.32 16 8 O -0.51 -8.74 13.92 5.47 0.08 -8.67 16 9 C 0.49 9.63 7.89 -11.64 -0.09 9.54 16 10 O -0.53 -11.51 16.48 5.49 0.09 -11.42 16 11 N -0.67 -14.10 5.54 -61.94 -0.34 -14.44 16 12 C 0.25 6.29 5.43 -5.19 -0.03 6.26 16 13 C -0.55 -14.58 9.28 -34.44 -0.32 -14.90 16 14 H 0.07 1.66 7.60 -52.48 -0.40 1.26 16 15 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 16 N -0.89 -25.33 13.29 55.43 0.74 -24.60 16 17 Si 0.91 20.55 29.54 -169.99 -5.02 15.53 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 19 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 20 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 21 C 0.30 3.69 7.77 -16.92 -0.13 3.56 16 22 O -0.47 -5.21 13.14 -18.91 -0.25 -5.46 16 23 N -0.49 -6.00 10.29 -9.37 -0.10 -6.09 16 24 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.08 0.34 8.07 -51.93 -0.42 -0.08 16 27 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 28 H 0.16 1.97 6.27 -52.49 -0.33 1.64 16 29 H 0.43 5.11 8.06 -40.82 -0.33 4.78 16 30 H 0.40 7.86 7.79 -40.82 -0.32 7.54 16 31 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.40 2.27 9.06 45.56 0.41 2.68 16 LS Contribution 309.86 15.07 4.67 4.67 Total: -1.00 -32.69 309.86 -5.03 -37.72 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -2.63 Total: 9.12 kcal Atomic # 6 Polarization: 14.59 SS G_CDS: -2.21 Total: 12.38 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: 0.24 Total: -53.87 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.08 Total: -25.55 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.69 -5.03 -37.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427893956.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.724 kcal (2) G-P(sol) polarization free energy of solvation -32.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds