Wall clock time and date at job start Tue Mar 31 2020 01:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38105 * 119.50294 * 2 1 4 4 C 1.38708 * 119.35396 * 180.02562 * 3 2 1 5 5 C 1.39032 * 118.41952 * 359.97438 * 4 3 2 6 6 N 1.39881 * 120.51282 * 179.97438 * 5 4 3 7 7 C 1.34778 * 119.99794 * 325.84736 * 6 5 4 8 8 O 1.21384 * 120.00029 * 4.23474 * 7 6 5 9 9 C 1.49339 * 119.99619 * 184.23578 * 7 6 5 10 10 O 1.21357 * 120.00175 * 0.02562 * 9 7 6 11 11 N 1.34778 * 119.99619 * 179.97438 * 9 7 6 12 12 C 1.46504 * 119.99741 * 180.02562 * 11 9 7 13 13 C 1.50696 * 109.46986 * 179.97438 * 12 11 9 14 14 H 1.08005 * 120.00165 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00009 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99744 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00135 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.46960 * 60.00413 * 17 15 13 19 19 H 1.48499 * 109.47291 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47210 * 300.00402 * 17 15 13 21 21 C 1.39567 * 118.97333 * 0.25983 * 5 4 3 22 22 O 1.35736 * 119.72890 * 179.74554 * 21 5 4 23 23 N 1.31994 * 119.50470 * 180.02562 * 2 1 3 24 24 H 1.09001 * 109.46891 * 89.99932 * 1 2 3 25 25 H 1.08998 * 109.46966 * 209.99526 * 1 2 3 26 26 H 1.08999 * 109.46901 * 329.99826 * 1 2 3 27 27 H 1.07993 * 120.31861 * 359.97438 * 3 2 1 28 28 H 1.07997 * 120.78467 * 179.97438 * 4 3 2 29 29 H 0.97001 * 119.99665 * 145.57148 * 6 5 4 30 30 H 0.96995 * 120.00365 * 359.97438 * 11 9 7 31 31 H 1.09005 * 109.46981 * 299.99550 * 12 11 9 32 32 H 1.09000 * 109.47156 * 60.00045 * 12 11 9 33 33 H 0.97000 * 119.99744 * 179.97438 * 16 15 13 34 34 H 0.96695 * 113.99915 * 89.99463 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1872 1.2020 0.0000 4 6 3.5742 1.1984 -0.0005 5 6 4.2327 -0.0261 -0.0005 6 7 5.6305 -0.0809 -0.0016 7 6 6.3411 0.8577 -0.6578 8 8 5.7724 1.7927 -1.1829 9 6 7.8282 0.7472 -0.7390 10 8 8.3967 -0.1879 -0.2144 11 7 8.5387 1.6855 -1.3957 12 6 9.9976 1.5768 -1.4758 13 6 10.5458 2.7421 -2.2583 14 1 9.8748 3.4893 -2.6558 15 6 11.9042 2.8551 -2.4658 16 7 12.7213 1.9456 -1.9813 17 14 12.5839 4.2992 -3.4364 18 1 12.2180 5.5682 -2.7572 19 1 14.0625 4.1892 -3.5175 20 1 12.0112 4.2882 -4.8065 21 6 3.4776 -1.1998 -0.0055 22 8 4.1047 -2.4037 -0.0108 23 7 2.1571 -1.1488 -0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6443 2.1355 -0.0004 28 1 4.1294 2.1247 -0.0010 29 1 6.0883 -0.7920 0.4733 30 1 8.0843 2.4322 -1.8159 31 1 10.4182 1.5838 -0.4702 32 1 10.2657 0.6458 -1.9753 33 1 13.6769 2.0249 -2.1277 34 1 4.2866 -2.7562 0.8710 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427893956.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:51 Heat of formation + Delta-G solvation = -103.498152 kcal Electronic energy + Delta-G solvation = -20605.440755 eV Core-core repulsion = 17116.649480 eV Total energy + Delta-G solvation = -3488.791275 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.42893 -41.23168 -39.65097 -38.31842 -36.88374 -36.04729 -34.39744 -32.96982 -32.47566 -29.83692 -28.36208 -26.12882 -24.61444 -24.30713 -22.96267 -21.51045 -20.49046 -19.65578 -18.77585 -18.38181 -17.67888 -17.34380 -17.17062 -16.81347 -16.65248 -16.02284 -15.51772 -15.36837 -15.02330 -14.83474 -14.34242 -14.08108 -13.97602 -13.66649 -13.19646 -13.13033 -13.01577 -12.75611 -12.70896 -12.69168 -12.23732 -12.00813 -11.56905 -11.04469 -10.84909 -10.74560 -10.35206 -10.09060 -9.35407 -8.32332 -6.48736 -0.35892 0.05246 0.37331 1.14890 1.44303 1.47036 1.55586 2.00316 2.34313 2.42848 2.56784 2.62352 3.03148 3.35684 3.54483 3.76817 3.90487 4.08980 4.44288 4.63773 4.82420 4.84772 4.95673 4.97352 5.08507 5.15560 5.20209 5.22688 5.47225 5.55858 5.74907 5.80112 6.33099 6.50371 6.56031 6.66590 6.82825 6.95415 7.24255 8.79112 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.038883 B = 0.003158 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.939706 B = 8865.314970 C = 9455.630484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.130 3.870 3 C -0.153 4.153 4 C -0.070 4.070 5 C 0.053 3.947 6 N -0.623 5.623 7 C 0.522 3.478 8 O -0.514 6.514 9 C 0.495 3.505 10 O -0.555 6.555 11 N -0.670 5.670 12 C 0.263 3.737 13 C -0.563 4.563 14 H 0.081 0.919 15 C 0.011 3.989 16 N -0.925 5.925 17 Si 0.982 3.018 18 H -0.263 1.263 19 H -0.283 1.283 20 H -0.265 1.265 21 C 0.295 3.705 22 O -0.485 6.485 23 N -0.506 5.506 24 H 0.088 0.912 25 H 0.077 0.923 26 H 0.105 0.895 27 H 0.178 0.822 28 H 0.152 0.848 29 H 0.431 0.569 30 H 0.414 0.586 31 H 0.007 0.993 32 H 0.004 0.996 33 H 0.271 0.729 34 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.352 -1.482 6.212 24.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.008 4.008 3 C -0.173 4.173 4 C -0.098 4.098 5 C -0.044 4.044 6 N -0.270 5.270 7 C 0.304 3.696 8 O -0.389 6.389 9 C 0.275 3.725 10 O -0.435 6.435 11 N -0.321 5.321 12 C 0.141 3.859 13 C -0.601 4.601 14 H 0.099 0.901 15 C -0.190 4.190 16 N -0.563 5.563 17 Si 0.805 3.195 18 H -0.187 1.187 19 H -0.208 1.208 20 H -0.189 1.189 21 C 0.113 3.887 22 O -0.295 6.295 23 N -0.227 5.227 24 H 0.107 0.893 25 H 0.096 0.904 26 H 0.124 0.876 27 H 0.195 0.805 28 H 0.169 0.831 29 H 0.271 0.729 30 H 0.251 0.749 31 H 0.025 0.975 32 H 0.022 0.978 33 H 0.080 0.920 34 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -23.509 -2.291 5.607 24.277 hybrid contribution 1.603 0.788 0.126 1.791 sum -21.907 -1.503 5.733 22.694 Atomic orbital electron populations 1.20851 0.85613 1.04980 1.04280 1.21718 0.98661 0.86714 0.93718 1.22266 0.93059 1.00855 1.01142 1.21895 0.95526 0.97186 0.95160 1.18974 0.82887 0.95186 1.07375 1.42771 1.04118 1.29740 1.50375 1.20142 0.87952 0.82794 0.78690 1.90716 1.71404 1.31682 1.45124 1.20083 0.87834 0.83699 0.80917 1.90726 1.72171 1.33194 1.47428 1.46145 1.09374 1.25385 1.51152 1.18847 0.73882 0.96981 0.96147 1.21541 0.93353 1.09259 1.35960 0.90128 1.25965 0.96913 0.99637 0.96474 1.70093 1.04373 1.36273 1.45604 0.85241 0.76928 0.78381 0.78917 1.18739 1.20804 1.18940 1.19024 0.86953 0.84275 0.98413 1.84841 1.76474 1.32397 1.35799 1.67107 1.08212 1.31836 1.15501 0.89303 0.90428 0.87628 0.80486 0.83082 0.72938 0.74948 0.97474 0.97761 0.92017 0.72064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.99 10.16 71.24 0.72 -0.27 16 2 C 0.13 2.31 6.78 42.50 0.29 2.60 16 3 C -0.15 -2.55 9.72 22.35 0.22 -2.34 16 4 C -0.07 -1.59 8.81 22.57 0.20 -1.39 16 5 C 0.05 1.33 6.35 38.37 0.24 1.58 16 6 N -0.62 -16.74 5.18 -304.16 -1.58 -18.31 16 7 C 0.52 17.12 7.74 87.23 0.68 17.80 16 8 O -0.51 -17.47 13.92 -3.35 -0.05 -17.52 16 9 C 0.49 19.72 7.89 87.23 0.69 20.41 16 10 O -0.56 -24.69 16.48 -3.27 -0.05 -24.74 16 11 N -0.67 -28.88 5.54 -468.25 -2.59 -31.47 16 12 C 0.26 13.92 5.43 85.63 0.46 14.39 16 13 C -0.56 -30.23 9.28 25.60 0.24 -29.99 16 14 H 0.08 3.99 7.60 -2.91 -0.02 3.97 16 15 C 0.01 0.58 5.46 84.65 0.46 1.04 16 16 N -0.93 -54.06 13.29 21.45 0.28 -53.77 16 17 Si 0.98 41.79 29.54 68.60 2.03 43.82 16 18 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 19 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 20 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 21 C 0.30 7.07 7.77 84.97 0.66 7.73 16 22 O -0.49 -10.33 13.14 -90.60 -1.19 -11.52 16 23 N -0.51 -11.71 10.29 -296.45 -3.05 -14.76 16 24 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.11 0.48 8.07 -2.39 -0.02 0.46 16 27 H 0.18 1.65 8.06 -2.91 -0.02 1.63 16 28 H 0.15 3.60 6.27 -2.91 -0.02 3.58 16 29 H 0.43 10.33 8.06 -92.71 -0.75 9.58 16 30 H 0.41 16.16 7.79 -92.71 -0.72 15.43 16 31 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 32 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 33 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 34 H 0.42 4.43 9.06 -74.06 -0.67 3.76 16 Total: -1.00 -70.99 309.86 -2.29 -73.28 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: -0.95 Total: 23.44 kcal Atomic # 6 Polarization: 26.69 SS G_CDS: 4.86 Total: 31.55 kcal Atomic # 7 Polarization: -111.38 SS G_CDS: -6.94 Total: -118.32 kcal Atomic # 8 Polarization: -52.49 SS G_CDS: -1.29 Total: -53.78 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -70.99 -2.29 -73.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427893956.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.215 kcal (2) G-P(sol) polarization free energy of solvation -70.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds