Wall clock time and date at job start Tue Mar 31 2020 00:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46950 * 2 1 4 4 C 1.50706 * 109.47023 * 119.99273 * 2 1 3 5 5 H 1.07995 * 119.99761 * 120.00317 * 4 2 1 6 6 C 1.37879 * 119.99904 * 300.00499 * 4 2 1 7 7 N 1.31507 * 119.99748 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 119.99997 * 359.97438 * 6 4 2 9 9 H 1.48495 * 109.47254 * 90.00465 * 8 6 4 10 10 H 1.48498 * 109.47085 * 210.00250 * 8 6 4 11 11 H 1.48498 * 109.47143 * 329.99958 * 8 6 4 12 12 N 1.46496 * 109.47575 * 239.99149 * 2 1 3 13 13 C 1.34777 * 119.99614 * 84.99689 * 12 2 1 14 14 O 1.21624 * 120.00096 * 0.02562 * 13 12 2 15 15 C 1.47296 * 119.99969 * 180.02562 * 13 12 2 16 16 C 1.39926 * 120.13011 * 0.02562 * 15 13 12 17 17 C 1.37900 * 119.97757 * 179.97438 * 16 15 13 18 18 C 1.39729 * 120.11133 * 359.97438 * 17 16 15 19 19 C 1.38597 * 120.14555 * 359.97438 * 18 17 16 20 20 C 1.38460 * 120.18336 * 359.75261 * 19 18 17 21 21 O 1.35726 * 120.08000 * 180.24771 * 20 19 18 22 22 O 1.36374 * 108.56550 * 180.02562 * 18 17 16 23 23 C 1.43955 * 105.55071 * 342.63247 * 22 18 17 24 24 O 1.36640 * 131.34989 * 179.97438 * 17 16 15 25 25 H 1.09001 * 109.47056 * 60.01036 * 1 2 3 26 26 H 1.08997 * 109.47198 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47400 * 300.00490 * 1 2 3 28 28 H 0.97003 * 120.00179 * 179.97438 * 7 6 4 29 29 H 0.96996 * 120.00499 * 265.00266 * 12 2 1 30 30 H 1.08005 * 120.01670 * 359.97438 * 16 15 13 31 31 H 1.07999 * 119.90900 * 179.97438 * 19 18 17 32 32 H 0.96697 * 114.00240 * 270.24725 * 21 20 19 33 33 H 1.08997 * 110.56177 * 268.71228 * 23 22 18 34 34 H 1.09004 * 110.55705 * 145.87464 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5883 1.1316 6 6 1.6991 -0.2391 2.4828 7 7 2.1370 -0.8592 3.5566 8 14 0.6257 1.2800 2.6540 9 1 -0.8022 0.8747 2.6992 10 1 0.9769 1.9957 3.9068 11 1 0.8490 2.1774 1.4921 12 7 2.0184 -0.6907 -1.1960 13 6 2.1471 -0.0185 -2.3570 14 8 1.8582 1.1617 -2.4117 15 6 2.6376 -0.7131 -3.5598 16 6 2.9703 -2.0709 -3.5001 17 6 3.4288 -2.7182 -4.6281 18 6 3.5614 -2.0205 -5.8315 19 6 3.2322 -0.6758 -5.8964 20 6 2.7657 -0.0182 -4.7707 21 8 2.4392 1.2975 -4.8378 22 8 4.0277 -2.8797 -6.7824 23 6 4.5682 -4.0003 -6.0583 24 8 3.8142 -4.0132 -4.8320 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.9030 -0.5276 4.4376 29 1 2.2491 -1.6319 -1.1524 30 1 2.8681 -2.6119 -2.5709 31 1 3.3366 -0.1402 -6.8284 32 1 3.1740 1.8954 -4.6441 33 1 5.6281 -3.8489 -5.8541 34 1 4.4126 -4.9256 -6.6131 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000436617036.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:32 Heat of formation + Delta-G solvation = -126.718068 kcal Electronic energy + Delta-G solvation = -21450.586811 eV Core-core repulsion = 17928.495894 eV Total energy + Delta-G solvation = -3522.090917 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.27752 -41.15850 -39.36651 -37.43119 -37.00607 -36.73010 -34.41533 -32.64064 -30.99596 -30.29331 -27.23116 -26.89852 -25.16517 -24.08611 -22.98804 -21.45637 -20.06570 -19.80975 -18.62086 -18.56743 -18.19066 -17.29091 -17.25859 -16.68878 -16.14910 -15.92184 -15.66830 -15.47937 -15.33680 -14.92962 -14.89697 -14.37114 -14.11634 -14.05643 -13.68302 -13.52252 -13.18668 -12.89183 -12.77172 -12.14135 -11.96304 -11.69744 -11.58995 -11.27424 -10.87067 -10.79409 -10.10960 -9.89792 -9.14340 -8.36946 -6.43181 -0.50299 -0.04822 1.29914 1.37732 1.47208 1.47424 1.80044 2.27006 2.28285 2.41217 2.54170 2.99534 3.18534 3.24058 3.72271 3.77149 3.86413 4.06038 4.15407 4.33589 4.45479 4.56045 4.69229 4.70480 4.80877 4.81655 4.93224 5.01289 5.10141 5.32630 5.42408 5.60857 5.90813 6.13555 6.57606 6.74872 6.81240 7.18687 7.37137 8.78227 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.027407 B = 0.004466 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.382952 B = 6267.763626 C = 7080.724194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.243 3.757 3 H 0.029 0.971 4 C -0.534 4.534 5 H 0.057 0.943 6 C 0.031 3.969 7 N -0.933 5.933 8 Si 0.939 3.061 9 H -0.261 1.261 10 H -0.292 1.292 11 H -0.260 1.260 12 N -0.697 5.697 13 C 0.552 3.448 14 O -0.567 6.567 15 C -0.167 4.167 16 C -0.052 4.052 17 C 0.007 3.993 18 C 0.079 3.921 19 C -0.134 4.134 20 C 0.183 3.817 21 O -0.481 6.481 22 O -0.310 6.310 23 C 0.202 3.798 24 O -0.318 6.318 25 H 0.045 0.955 26 H 0.063 0.937 27 H 0.043 0.957 28 H 0.270 0.730 29 H 0.404 0.596 30 H 0.151 0.849 31 H 0.172 0.828 32 H 0.413 0.587 33 H 0.111 0.889 34 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.149 -4.275 -21.153 22.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.138 3.862 3 H 0.047 0.953 4 C -0.572 4.572 5 H 0.075 0.925 6 C -0.169 4.169 7 N -0.572 5.572 8 Si 0.766 3.234 9 H -0.187 1.187 10 H -0.219 1.219 11 H -0.185 1.185 12 N -0.347 5.347 13 C 0.340 3.660 14 O -0.448 6.448 15 C -0.171 4.171 16 C -0.071 4.071 17 C -0.037 4.037 18 C 0.033 3.967 19 C -0.153 4.153 20 C 0.135 3.865 21 O -0.295 6.295 22 O -0.226 6.226 23 C 0.092 3.908 24 O -0.235 6.235 25 H 0.065 0.935 26 H 0.083 0.917 27 H 0.061 0.939 28 H 0.080 0.920 29 H 0.241 0.759 30 H 0.169 0.831 31 H 0.190 0.810 32 H 0.274 0.726 33 H 0.128 0.872 34 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 4.378 -3.858 -21.225 22.013 hybrid contribution 0.229 0.097 0.821 0.858 sum 4.606 -3.760 -20.405 21.253 Atomic orbital electron populations 1.22359 0.97845 1.01698 0.99546 1.18811 0.91195 0.93404 0.82797 0.95312 1.21233 1.32455 1.13653 0.89867 0.92490 1.25538 0.96768 0.99348 0.95271 1.69971 1.46653 1.41915 0.98669 0.86004 0.79714 0.80368 0.77311 1.18661 1.21936 1.18454 1.45989 1.65279 1.14308 1.09093 1.18192 0.78100 0.86450 0.83265 1.90747 1.52155 1.16521 1.85359 1.20041 1.08513 0.94313 0.94262 1.20097 0.97960 0.91903 0.97162 1.19554 1.05017 0.84182 0.94942 1.19831 0.98570 0.91949 0.86363 1.20278 1.03942 0.90367 1.00720 1.17951 0.93047 0.85793 0.89680 1.84737 1.40596 1.12282 1.91876 1.87337 1.75041 1.30140 1.30059 1.26268 0.95774 0.91126 0.77595 1.87423 1.69955 1.22485 1.43600 0.93548 0.91750 0.93869 0.92026 0.75948 0.83099 0.81020 0.72626 0.87187 0.81497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.88 8.96 71.98 0.65 -6.24 16 2 C 0.24 11.55 2.15 44.25 0.10 11.64 16 3 H 0.03 1.51 6.63 -2.39 -0.02 1.49 16 4 C -0.53 -29.02 9.31 25.60 0.24 -28.78 16 5 H 0.06 3.29 7.98 -2.91 -0.02 3.26 16 6 C 0.03 1.72 5.45 84.66 0.46 2.18 16 7 N -0.93 -55.69 13.96 21.45 0.30 -55.39 16 8 Si 0.94 44.48 24.37 68.60 1.67 46.15 16 9 H -0.26 -11.66 6.87 99.48 0.68 -10.98 16 10 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 11 H -0.26 -12.19 6.53 99.48 0.65 -11.54 16 12 N -0.70 -27.92 5.02 -449.49 -2.26 -30.18 16 13 C 0.55 21.20 7.72 86.63 0.67 21.87 16 14 O -0.57 -25.14 14.81 16.89 0.25 -24.89 16 15 C -0.17 -5.04 5.89 -20.01 -0.12 -5.15 16 16 C -0.05 -1.36 9.54 22.60 0.22 -1.14 16 17 C 0.01 0.18 7.13 22.55 0.16 0.34 16 18 C 0.08 1.71 7.15 22.72 0.16 1.87 16 19 C -0.13 -2.81 9.98 22.41 0.22 -2.58 16 20 C 0.18 4.79 6.71 22.80 0.15 4.94 16 21 O -0.48 -12.83 11.56 -69.49 -0.80 -13.63 16 22 O -0.31 -5.68 11.39 -74.58 -0.85 -6.53 16 23 C 0.20 2.55 8.88 113.37 1.01 3.56 16 24 O -0.32 -6.68 11.41 -77.71 -0.89 -7.56 16 25 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.06 2.65 8.14 -2.39 -0.02 2.64 16 27 H 0.04 1.93 3.27 -2.39 -0.01 1.92 16 28 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 29 H 0.40 14.31 6.56 -92.71 -0.61 13.70 16 30 H 0.15 3.69 6.39 -2.91 -0.02 3.67 16 31 H 0.17 2.67 8.06 -2.91 -0.02 2.64 16 32 H 0.41 7.73 9.06 -74.06 -0.67 7.06 16 33 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.17 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -71.72 290.72 1.16 -70.56 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -0.18 Total: 18.98 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: 3.91 Total: 2.50 kcal Atomic # 7 Polarization: -83.62 SS G_CDS: -1.96 Total: -85.57 kcal Atomic # 8 Polarization: -50.32 SS G_CDS: -2.29 Total: -52.61 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.67 Total: 46.15 kcal Total: -71.72 1.16 -70.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436617036.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.160 kcal (2) G-P(sol) polarization free energy of solvation -71.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds