Wall clock time and date at job start Tue Mar 31 2020 00:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46502 * 109.46678 * 162.93687 * 3 2 1 5 5 C 1.37091 * 120.00081 * 268.94001 * 4 3 2 6 6 H 1.08000 * 120.00124 * 190.00726 * 5 4 3 7 7 C 1.38951 * 119.99852 * 10.01160 * 5 4 3 8 8 N 1.31412 * 120.00075 * 24.62326 * 7 5 4 9 9 Si 1.86803 * 119.99828 * 204.61924 * 7 5 4 10 10 H 1.48498 * 109.46989 * 60.00304 * 9 7 5 11 11 H 1.48508 * 109.46874 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47309 * 299.99919 * 9 7 5 13 13 C 1.34783 * 119.99767 * 88.94678 * 4 3 2 14 14 O 1.21297 * 119.99797 * 179.97438 * 13 4 3 15 15 C 1.50696 * 120.00370 * 359.97438 * 13 4 3 16 16 F 1.39892 * 109.47092 * 85.00223 * 15 13 4 17 17 F 1.39906 * 109.46638 * 325.00404 * 15 13 4 18 18 C 1.50695 * 109.47176 * 205.00298 * 15 13 4 19 19 C 1.38233 * 120.00191 * 269.99801 * 18 15 13 20 20 C 1.38235 * 120.00337 * 180.02562 * 19 18 15 21 21 C 1.38241 * 119.99836 * 359.95994 * 20 19 18 22 22 C 1.38238 * 119.99863 * 0.27371 * 21 20 19 23 23 C 1.38238 * 120.00074 * 359.51220 * 22 21 20 24 24 H 4.40637 * 5.51386 * 179.97438 * 4 1 2 25 25 H 1.08993 * 109.47469 * 42.93941 * 3 2 1 26 26 H 1.09000 * 109.47335 * 282.93209 * 3 2 1 27 27 H 0.96999 * 119.99848 * 179.97438 * 8 7 5 28 28 H 1.07999 * 120.00137 * 359.97438 * 19 18 15 29 29 H 1.07994 * 120.00629 * 179.97438 * 20 19 18 30 30 H 1.07998 * 120.00036 * 180.02562 * 21 20 19 31 31 H 1.08003 * 119.99874 * 179.72547 * 22 21 20 32 32 H 1.07999 * 119.99752 * 180.24924 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1337 1.3213 -0.4053 5 6 3.3827 1.5840 -1.7276 6 1 3.8915 2.4935 -2.0110 7 6 2.9805 0.6800 -2.7032 8 7 1.9832 -0.1422 -2.4660 9 14 3.8574 0.6336 -4.3519 10 1 5.2929 0.3179 -4.1403 11 1 3.2419 -0.4100 -5.2107 12 1 3.7340 1.9563 -5.0157 13 6 3.3376 2.2781 0.5219 14 8 3.7418 3.3714 0.1864 15 6 3.0635 1.9896 1.9753 16 9 4.1851 1.3822 2.5498 17 9 1.9632 1.1319 2.0810 18 6 2.7662 3.2792 2.6961 19 6 3.7942 4.0018 3.2723 20 6 3.5214 5.1845 3.9340 21 6 2.2208 5.6450 4.0186 22 6 1.1922 4.9199 3.4465 23 6 1.4655 3.7395 2.7811 24 1 -1.0502 -0.0005 -0.0001 25 1 3.0098 -0.7514 -0.7000 26 1 3.0095 -0.2292 1.0016 27 1 1.7022 -0.7730 -3.1472 28 1 4.8103 3.6419 3.2064 29 1 4.3244 5.7488 4.3845 30 1 2.0077 6.5692 4.5352 31 1 0.1755 5.2775 3.5165 32 1 0.6623 3.1751 2.3307 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491023543.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:27 Heat of formation + Delta-G solvation = -33.992675 kcal Electronic energy + Delta-G solvation = -21997.676433 eV Core-core repulsion = 18368.518875 eV Total energy + Delta-G solvation = -3629.157558 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.081 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.37644 -48.31222 -40.60416 -39.89203 -37.36104 -34.10531 -33.19590 -32.98612 -31.90555 -28.90834 -28.20174 -26.28999 -23.59360 -23.27570 -21.50188 -19.92448 -19.29053 -18.90652 -18.48166 -18.21757 -17.35638 -16.81120 -16.19533 -15.89093 -15.66593 -15.62574 -15.49711 -15.12812 -14.73937 -14.43914 -14.25803 -14.12586 -14.10401 -13.71050 -13.54418 -13.21281 -12.78372 -12.56548 -12.20117 -12.14912 -12.08029 -11.32371 -11.13924 -10.75604 -10.54738 -10.09652 -9.94649 -9.91882 -8.49199 -6.07503 0.15766 0.40562 1.17749 1.39898 1.50160 1.58224 1.87417 2.23557 2.29400 2.44722 2.63006 2.84346 2.92015 3.18842 3.54431 3.65437 3.87658 4.04488 4.05868 4.21233 4.43345 4.51423 4.60167 4.79307 4.82929 5.04720 5.33234 5.35002 5.41775 5.43935 5.48645 5.74252 5.98007 6.18450 6.86634 7.08431 7.14103 7.60061 8.47130 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.024231 B = 0.006222 C = 0.005717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.266009 B = 4498.970491 C = 4896.414636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.145 4.145 3 C 0.226 3.774 4 N -0.415 5.415 5 C -0.364 4.364 6 H 0.088 0.912 7 C 0.011 3.989 8 N -0.852 5.852 9 Si 0.994 3.006 10 H -0.266 1.266 11 H -0.266 1.266 12 H -0.273 1.273 13 C 0.384 3.616 14 O -0.589 6.589 15 C 0.338 3.662 16 F -0.189 7.189 17 F -0.181 7.181 18 C -0.152 4.152 19 C -0.094 4.094 20 C -0.121 4.121 21 C -0.098 4.098 22 C -0.122 4.122 23 C -0.105 4.105 24 H 0.237 0.763 25 H 0.101 0.899 26 H 0.081 0.919 27 H 0.281 0.719 28 H 0.123 0.877 29 H 0.161 0.839 30 H 0.168 0.832 31 H 0.158 0.842 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.717 3.764 10.402 11.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.147 4.147 3 C 0.104 3.896 4 N -0.130 5.130 5 C -0.490 4.490 6 H 0.106 0.894 7 C -0.195 4.195 8 N -0.486 5.486 9 Si 0.816 3.184 10 H -0.190 1.190 11 H -0.191 1.191 12 H -0.199 1.199 13 C 0.170 3.830 14 O -0.476 6.476 15 C 0.298 3.702 16 F -0.170 7.170 17 F -0.162 7.162 18 C -0.153 4.153 19 C -0.112 4.112 20 C -0.138 4.138 21 C -0.115 4.115 22 C -0.139 4.139 23 C -0.123 4.123 24 H 0.254 0.746 25 H 0.119 0.881 26 H 0.099 0.901 27 H 0.092 0.908 28 H 0.141 0.859 29 H 0.178 0.822 30 H 0.185 0.815 31 H 0.176 0.824 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.620 4.040 10.131 11.026 hybrid contribution 0.156 -0.665 -1.041 1.245 sum -1.465 3.375 9.090 9.806 Atomic orbital electron populations 1.25087 0.96204 0.99640 1.04755 1.22918 0.94400 1.00628 0.96731 1.18552 0.85909 0.85803 0.99356 1.44068 1.52371 1.09800 1.06771 1.19760 1.38884 1.09184 0.81175 0.89404 1.26173 0.94851 0.95326 1.03196 1.70227 1.20574 1.20875 1.36967 0.84999 0.78778 0.78446 0.76137 1.19041 1.19077 1.19853 1.20411 0.89652 0.85849 0.87087 1.90522 1.52813 1.23778 1.80480 1.19688 0.73322 0.85419 0.91800 1.92983 1.52943 1.84987 1.86097 1.93043 1.54127 1.72173 1.96845 1.19880 0.97032 0.95853 1.02534 1.21057 0.98120 0.95779 0.96237 1.21500 0.98696 0.94825 0.98818 1.21741 0.91976 1.00238 0.97593 1.21471 1.01584 0.93497 0.97368 1.21068 0.94627 0.97926 0.98716 0.74649 0.88075 0.90070 0.90830 0.85899 0.82183 0.81462 0.82419 0.86334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.93 19.25 74.32 1.43 -8.50 16 2 C -0.15 -6.82 9.37 31.12 0.29 -6.53 16 3 C 0.23 10.87 4.75 84.57 0.40 11.27 16 4 N -0.41 -22.40 2.59 -645.42 -1.67 -24.07 16 5 C -0.36 -20.57 9.41 84.04 0.79 -19.77 16 6 H 0.09 5.27 7.32 -2.91 -0.02 5.25 16 7 C 0.01 0.57 4.88 84.93 0.41 0.99 16 8 N -0.85 -43.38 9.22 21.66 0.20 -43.19 16 9 Si 0.99 40.63 29.62 68.60 2.03 42.67 16 10 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 11 H -0.27 -10.15 7.11 99.48 0.71 -9.45 16 12 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 13 C 0.38 20.31 7.08 87.65 0.62 20.93 16 14 O -0.59 -34.33 15.83 -3.08 -0.05 -34.38 16 15 C 0.34 14.93 1.57 29.10 0.05 14.98 16 16 F -0.19 -7.96 15.95 44.97 0.72 -7.24 16 17 F -0.18 -7.79 11.49 44.97 0.52 -7.28 16 18 C -0.15 -5.93 4.38 -19.87 -0.09 -6.02 16 19 C -0.09 -3.18 9.36 22.27 0.21 -2.97 16 20 C -0.12 -3.04 10.05 22.27 0.22 -2.82 16 21 C -0.10 -2.15 10.05 22.27 0.22 -1.93 16 22 C -0.12 -3.12 10.05 22.27 0.22 -2.90 16 23 C -0.11 -3.63 9.40 22.27 0.21 -3.42 16 24 H 0.24 7.53 7.80 -4.41 -0.03 7.50 16 25 H 0.10 4.98 6.32 -2.39 -0.02 4.96 16 26 H 0.08 3.58 5.95 -2.39 -0.01 3.57 16 27 H 0.28 13.32 8.31 -92.71 -0.77 12.55 16 28 H 0.12 4.12 7.60 -2.91 -0.02 4.10 16 29 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 30 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 31 H 0.16 2.94 8.06 -2.91 -0.02 2.91 16 32 H 0.12 4.18 7.60 -2.91 -0.02 4.16 16 Total: -1.00 -68.03 290.71 7.90 -60.13 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 1.15 Total: 20.05 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: 5.00 Total: -6.70 kcal Atomic # 7 Polarization: -65.78 SS G_CDS: -1.47 Total: -67.25 kcal Atomic # 8 Polarization: -34.33 SS G_CDS: -0.05 Total: -34.38 kcal Atomic # 9 Polarization: -15.75 SS G_CDS: 1.23 Total: -14.52 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.67 kcal Total: -68.03 7.90 -60.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491023543.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.136 kcal (2) G-P(sol) polarization free energy of solvation -68.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds